Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Rab6b-201ENSMUST00000035155 5007 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Ushbp1Q8R370 Kdelr2-201ENSMUST00000110731 1829 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Ushbp1Q8R370 Kcnk4-201ENSMUST00000025908 1715 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Ushbp1Q8R370 Ipo9-201ENSMUST00000041023 6247 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Ushbp1Q8R370 Plppr5-202ENSMUST00000106473 4294 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Ushbp1Q8R370 Lrch4-201ENSMUST00000031734 3078 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
Ushbp1Q8R370 Prss53-202ENSMUST00000205300 1662 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Ushbp1Q8R370 Gm5414-201ENSMUST00000062879 1659 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
Ushbp1Q8R370 Matn4-201ENSMUST00000103103 2304 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Ushbp1Q8R370 Ctcf-201ENSMUST00000005841 3782 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Ushbp1Q8R370 Rogdi-207ENSMUST00000202281 1355 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Ushbp1Q8R370 Mipep-201ENSMUST00000063562 3015 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Ushbp1Q8R370 Otud5-202ENSMUST00000115665 3821 ntTSL 5 BASIC18.73■□□□□ 0.59
Ushbp1Q8R370 Steap1-201ENSMUST00000015796 1230 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Ushbp1Q8R370 Psme2-208ENSMUST00000161807 962 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Ushbp1Q8R370 Gm7791-201ENSMUST00000219066 539 ntBASIC18.73■□□□□ 0.59
Ushbp1Q8R370 Lsm10-201ENSMUST00000055575 943 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Ushbp1Q8R370 Nelfb-201ENSMUST00000059849 2637 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Ushbp1Q8R370 Dclk2-208ENSMUST00000194452 2066 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Ushbp1Q8R370 Tm9sf1-205ENSMUST00000122358 2517 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Ushbp1Q8R370 Psen2-205ENSMUST00000111108 1997 ntAPPRIS P2 TSL 1 (best) BASIC18.73■□□□□ 0.59
Ushbp1Q8R370 Dtx2-201ENSMUST00000005072 2562 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
Ushbp1Q8R370 Gpaa1-201ENSMUST00000023221 2107 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Ushbp1Q8R370 Atg4c-201ENSMUST00000030279 3178 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Ushbp1Q8R370 Tmem94-202ENSMUST00000103033 5238 ntAPPRIS P2 TSL 2 BASIC18.72■□□□□ 0.59
Ushbp1Q8R370 Arhgef9-216ENSMUST00000197206 2227 ntTSL 5 BASIC18.72■□□□□ 0.59
Ushbp1Q8R370 Vmn1r17-201ENSMUST00000227186 2234 ntAPPRIS P2 BASIC18.72■□□□□ 0.59
Ushbp1Q8R370 Gm16861-201ENSMUST00000181498 1647 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Ushbp1Q8R370 Ggnbp2-201ENSMUST00000018547 2478 ntTSL 5 BASIC18.72■□□□□ 0.59
Ushbp1Q8R370 Yif1b-203ENSMUST00000108238 1126 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
Ushbp1Q8R370 Gm16295-201ENSMUST00000139512 643 ntTSL 3 BASIC18.72■□□□□ 0.59
Ushbp1Q8R370 Prr3-209ENSMUST00000174849 581 ntTSL 2 BASIC18.72■□□□□ 0.59
Ushbp1Q8R370 Muc2-203ENSMUST00000179227 399 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Ushbp1Q8R370 Mrps6-201ENSMUST00000047429 846 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Ushbp1Q8R370 Gm43548-201ENSMUST00000197139 2353 ntBASIC18.72■□□□□ 0.59
Ushbp1Q8R370 Cdv3-207ENSMUST00000190226 3107 ntTSL 5 BASIC18.72■□□□□ 0.59
Ushbp1Q8R370 Tead3-205ENSMUST00000154873 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
Ushbp1Q8R370 Nfib-205ENSMUST00000107247 3267 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
Ushbp1Q8R370 Stk39-201ENSMUST00000102715 3536 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Ushbp1Q8R370 Coro1a-201ENSMUST00000032949 1660 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Ushbp1Q8R370 Hand1-201ENSMUST00000036917 1904 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Ushbp1Q8R370 Pld2-203ENSMUST00000108557 3655 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
Ushbp1Q8R370 Zrsr2-202ENSMUST00000112289 2735 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
Ushbp1Q8R370 Grwd1-201ENSMUST00000107723 1898 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Ushbp1Q8R370 Cxcl12-202ENSMUST00000112866 1878 ntAPPRIS ALT1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Ushbp1Q8R370 Gm16638-201ENSMUST00000148687 1865 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Ushbp1Q8R370 Zfp648-201ENSMUST00000086195 1892 ntAPPRIS P1 TSL 3 BASIC18.71■□□□□ 0.59
Ushbp1Q8R370 Mdm1-204ENSMUST00000169817 2022 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
Ushbp1Q8R370 Pard3-209ENSMUST00000160272 5815 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
Ushbp1Q8R370 Pgam1-ps2-201ENSMUST00000117129 765 ntBASIC18.71■□□□□ 0.59
Ushbp1Q8R370 Gm44973-201ENSMUST00000207050 1003 ntAPPRIS P1 TSL 3 BASIC18.71■□□□□ 0.59
Ushbp1Q8R370 Gm26709-203ENSMUST00000223260 715 ntTSL 5 BASIC18.71■□□□□ 0.59
Ushbp1Q8R370 Coq7-201ENSMUST00000032887 914 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Ushbp1Q8R370 Tmem47-203ENSMUST00000171953 1801 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Ushbp1Q8R370 Bdkrb1-202ENSMUST00000182899 1313 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
Ushbp1Q8R370 Bdkrb1-201ENSMUST00000041229 1338 ntAPPRIS P1 BASIC18.71■□□□□ 0.59
Ushbp1Q8R370 Spats2l-212ENSMUST00000170139 2315 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.58
Ushbp1Q8R370 Rnf169-201ENSMUST00000080817 7147 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.58
Ushbp1Q8R370 Abi1-215ENSMUST00000178908 2239 ntAPPRIS ALT1 TSL 5 BASIC18.7■□□□□ 0.58
Ushbp1Q8R370 Dlgap4-205ENSMUST00000109567 4840 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
Ushbp1Q8R370 Gbe1-201ENSMUST00000023393 2846 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
Ushbp1Q8R370 Rab35-201ENSMUST00000031492 2820 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Ushbp1Q8R370 Prrt4-201ENSMUST00000159200 3411 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Ushbp1Q8R370 Sgta-201ENSMUST00000005067 1969 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Ushbp1Q8R370 Agpat3-203ENSMUST00000105388 3681 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
Ushbp1Q8R370 Bpifa3-202ENSMUST00000109746 1102 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Ushbp1Q8R370 Tulp1-202ENSMUST00000114794 1738 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Ushbp1Q8R370 Psmg4-201ENSMUST00000124996 474 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Ushbp1Q8R370 Flg-203ENSMUST00000178695 777 ntAPPRIS P5 BASIC18.7■□□□□ 0.58
Ushbp1Q8R370 Pcyox1-206ENSMUST00000204116 546 ntTSL 5 BASIC18.7■□□□□ 0.58
Ushbp1Q8R370 Gm45631-201ENSMUST00000210318 1244 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Ushbp1Q8R370 Lrrc36-206ENSMUST00000216765 2301 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
Ushbp1Q8R370 Slc35d2-204ENSMUST00000222168 472 ntTSL 3 BASIC18.7■□□□□ 0.58
Ushbp1Q8R370 Gm8258-201ENSMUST00000055593 1449 ntBASIC18.7■□□□□ 0.58
Ushbp1Q8R370 Crebbp-201ENSMUST00000023165 10820 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Ushbp1Q8R370 1700066B19Rik-201ENSMUST00000097617 2504 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Ushbp1Q8R370 Cct8-201ENSMUST00000026704 2394 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Ushbp1Q8R370 Map3k7cl-201ENSMUST00000026700 1652 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Ushbp1Q8R370 Large2-215ENSMUST00000176810 2477 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
Ushbp1Q8R370 Irak1-205ENSMUST00000114353 1896 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
Ushbp1Q8R370 Capn1-202ENSMUST00000164843 3048 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
Ushbp1Q8R370 Ppp2ca-201ENSMUST00000020608 7102 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Ushbp1Q8R370 Nin-203ENSMUST00000095666 7183 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
Ushbp1Q8R370 Gapdh-202ENSMUST00000117757 1273 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Ushbp1Q8R370 Gm15952-201ENSMUST00000122858 490 ntTSL 3 BASIC18.69■□□□□ 0.58
Ushbp1Q8R370 Gm13420-201ENSMUST00000129574 1091 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
Ushbp1Q8R370 Ramp2-204ENSMUST00000129680 1178 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Ushbp1Q8R370 Mocs1-202ENSMUST00000165390 729 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Ushbp1Q8R370 Syt9-201ENSMUST00000073459 3817 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Ushbp1Q8R370 Amigo1-202ENSMUST00000106656 5482 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Ushbp1Q8R370 Slc6a8-206ENSMUST00000164449 2151 ntTSL 5 BASIC18.69■□□□□ 0.58
Ushbp1Q8R370 9330151L19Rik-201ENSMUST00000181850 2545 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Ushbp1Q8R370 Gm36858-201ENSMUST00000194501 2391 ntBASIC18.69■□□□□ 0.58
Ushbp1Q8R370 Nagk-203ENSMUST00000113851 1323 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Ushbp1Q8R370 Gsg1-201ENSMUST00000087729 1307 ntAPPRIS P4 TSL 1 (best) BASIC18.69■□□□□ 0.58
Ushbp1Q8R370 Gapvd1-203ENSMUST00000113099 5758 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
Ushbp1Q8R370 Pex11a-201ENSMUST00000032761 2241 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Ushbp1Q8R370 Lhx6-203ENSMUST00000112963 3481 ntTSL 2 BASIC18.69■□□□□ 0.58
Ushbp1Q8R370 Csnk2a2-203ENSMUST00000212214 6779 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Ushbp1Q8R370 Ddn-201ENSMUST00000075444 3740 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Retrieved 100 of 76,532 protein–RNA pairs in 57.6 ms