Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Tbc1d9-202ENSMUST00000093393 5334 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Sh3rf1Q69ZI1 Mtcp1-201ENSMUST00000033542 1592 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Sh3rf1Q69ZI1 Fbrsl1-202ENSMUST00000069483 4720 ntAPPRIS P2 TSL 5 BASIC16.98■□□□□ 0.31
Sh3rf1Q69ZI1 Mon2-202ENSMUST00000073792 9301 ntAPPRIS ALT2 TSL 5 BASIC16.97■□□□□ 0.31
Sh3rf1Q69ZI1 Zfp219-212ENSMUST00000228580 2812 ntAPPRIS ALT2 BASIC16.97■□□□□ 0.31
Sh3rf1Q69ZI1 Tmem150b-202ENSMUST00000086364 2822 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
Sh3rf1Q69ZI1 Actr3-201ENSMUST00000027579 2554 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
Sh3rf1Q69ZI1 Ddx50-201ENSMUST00000020270 2535 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Sh3rf1Q69ZI1 Htr3a-201ENSMUST00000003826 2082 ntAPPRIS P2 TSL 1 (best) BASIC16.97■□□□□ 0.31
Sh3rf1Q69ZI1 Fscn1-207ENSMUST00000198017 2157 ntTSL 5 BASIC16.97■□□□□ 0.31
Sh3rf1Q69ZI1 Slc2a8-204ENSMUST00000153484 1168 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
Sh3rf1Q69ZI1 Gm11973-203ENSMUST00000155498 867 ntTSL 3 BASIC16.97■□□□□ 0.31
Sh3rf1Q69ZI1 Tfap2a-209ENSMUST00000225180 1828 ntBASIC16.97■□□□□ 0.31
Sh3rf1Q69ZI1 Gm17509-201ENSMUST00000165680 2375 ntAPPRIS P1 BASIC16.97■□□□□ 0.31
Sh3rf1Q69ZI1 Aurka-202ENSMUST00000109139 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
Sh3rf1Q69ZI1 Aurka-201ENSMUST00000028997 1905 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
Sh3rf1Q69ZI1 Sart1-201ENSMUST00000044207 5091 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Sh3rf1Q69ZI1 Diaph2-201ENSMUST00000037854 3742 ntAPPRIS P2 TSL 1 (best) BASIC16.97■□□□□ 0.31
Sh3rf1Q69ZI1 Stxbp3-205ENSMUST00000138552 1789 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
Sh3rf1Q69ZI1 Whrn-207ENSMUST00000107393 4028 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
Sh3rf1Q69ZI1 Whrn-203ENSMUST00000084510 4049 ntAPPRIS P4 TSL 1 (best) BASIC16.97■□□□□ 0.31
Sh3rf1Q69ZI1 Pkp2-202ENSMUST00000161342 2931 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
Sh3rf1Q69ZI1 Kcnk4-201ENSMUST00000025908 1715 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Sh3rf1Q69ZI1 Anapc7-203ENSMUST00000122010 2950 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.31
Sh3rf1Q69ZI1 Gpaa1-201ENSMUST00000023221 2107 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Sh3rf1Q69ZI1 Apoa5-202ENSMUST00000121598 2515 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Sh3rf1Q69ZI1 Napa-201ENSMUST00000006181 2517 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Sh3rf1Q69ZI1 Kcnq2-205ENSMUST00000103048 2827 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
Sh3rf1Q69ZI1 Tmem183a-201ENSMUST00000049470 3149 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Sh3rf1Q69ZI1 Rpl18-ps2-201ENSMUST00000118863 567 ntBASIC16.96■□□□□ 0.31
Sh3rf1Q69ZI1 Gm11539-201ENSMUST00000119837 557 ntBASIC16.96■□□□□ 0.31
Sh3rf1Q69ZI1 Gm13436-201ENSMUST00000120418 567 ntBASIC16.96■□□□□ 0.31
Sh3rf1Q69ZI1 E030044B06Rik-201ENSMUST00000181195 1266 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
Sh3rf1Q69ZI1 Mir6349-201ENSMUST00000184059 97 ntBASIC16.96■□□□□ 0.31
Sh3rf1Q69ZI1 Cct6b-201ENSMUST00000021040 1787 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Sh3rf1Q69ZI1 Sphk1-206ENSMUST00000106388 1891 ntAPPRIS ALT2 TSL 5 BASIC16.96■□□□□ 0.31
Sh3rf1Q69ZI1 Cacna1a-202ENSMUST00000122053 7589 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
Sh3rf1Q69ZI1 Flvcr1-201ENSMUST00000085635 4040 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Sh3rf1Q69ZI1 Rccd1-202ENSMUST00000121882 2324 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.3
Sh3rf1Q69ZI1 Tmem132e-201ENSMUST00000054245 4386 ntAPPRIS P2 TSL 1 (best) BASIC16.96■□□□□ 0.3
Sh3rf1Q69ZI1 Nin-203ENSMUST00000095666 7183 ntAPPRIS ALT2 TSL 5 BASIC16.95■□□□□ 0.3
Sh3rf1Q69ZI1 Txnrd2-215ENSMUST00000206151 2874 ntAPPRIS P2 TSL 5 BASIC16.95■□□□□ 0.3
Sh3rf1Q69ZI1 Galnt18-201ENSMUST00000049430 2575 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
Sh3rf1Q69ZI1 Cacna1c-216ENSMUST00000188522 7338 ntAPPRIS ALT2 TSL 5 BASIC16.95■□□□□ 0.3
Sh3rf1Q69ZI1 Atp6v1c1-201ENSMUST00000022904 2071 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Sh3rf1Q69ZI1 Usp27x-201ENSMUST00000115744 3240 ntAPPRIS P1 BASIC16.95■□□□□ 0.3
Sh3rf1Q69ZI1 Grwd1-201ENSMUST00000107723 1898 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Sh3rf1Q69ZI1 Sars2-201ENSMUST00000094632 1868 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Sh3rf1Q69ZI1 Bicc1-203ENSMUST00000143791 5431 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Sh3rf1Q69ZI1 Casp6-201ENSMUST00000029626 1456 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Sh3rf1Q69ZI1 Bloc1s3-201ENSMUST00000077408 3188 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Sh3rf1Q69ZI1 Bad-202ENSMUST00000113423 990 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
Sh3rf1Q69ZI1 Gm16731-201ENSMUST00000132432 922 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
Sh3rf1Q69ZI1 AC153845.2-202ENSMUST00000213372 807 ntTSL 3 BASIC16.95■□□□□ 0.3
Sh3rf1Q69ZI1 Gzmd-201ENSMUST00000082093 964 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Sh3rf1Q69ZI1 Akt2-214ENSMUST00000167435 2865 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Sh3rf1Q69ZI1 Capn10-201ENSMUST00000027488 2902 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Sh3rf1Q69ZI1 Fubp3-202ENSMUST00000113482 3268 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Sh3rf1Q69ZI1 Rbbp7-202ENSMUST00000112326 1430 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
Sh3rf1Q69ZI1 Tlcd1-204ENSMUST00000127587 1412 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
Sh3rf1Q69ZI1 Snapc3-201ENSMUST00000030206 1405 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Sh3rf1Q69ZI1 Dyx1c1-201ENSMUST00000034734 1975 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
Sh3rf1Q69ZI1 Rbm12b2-202ENSMUST00000095143 3147 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Sh3rf1Q69ZI1 Cadps2-212ENSMUST00000163871 4969 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
Sh3rf1Q69ZI1 Dmgdh-201ENSMUST00000048001 2992 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Sh3rf1Q69ZI1 Zfp691-204ENSMUST00000179290 1721 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Sh3rf1Q69ZI1 Lat2-202ENSMUST00000077636 1717 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
Sh3rf1Q69ZI1 Rab33b-201ENSMUST00000054387 3492 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Sh3rf1Q69ZI1 Pip4k2a-201ENSMUST00000006912 3477 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Sh3rf1Q69ZI1 Epo-203ENSMUST00000111039 706 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
Sh3rf1Q69ZI1 Gm13559-201ENSMUST00000120476 863 ntBASIC16.94■□□□□ 0.3
Sh3rf1Q69ZI1 Smim1-205ENSMUST00000131325 842 ntTSL 5 BASIC16.94■□□□□ 0.3
Sh3rf1Q69ZI1 Gm7889-201ENSMUST00000185591 958 ntBASIC16.94■□□□□ 0.3
Sh3rf1Q69ZI1 Gm3375-201ENSMUST00000203929 796 ntBASIC16.94■□□□□ 0.3
Sh3rf1Q69ZI1 AC166341.7-201ENSMUST00000221698 126 ntBASIC16.94■□□□□ 0.3
Sh3rf1Q69ZI1 Odf3b-204ENSMUST00000227834 930 ntBASIC16.94■□□□□ 0.3
Sh3rf1Q69ZI1 Pskh1-201ENSMUST00000049699 3255 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Sh3rf1Q69ZI1 Sec14l1-203ENSMUST00000103026 2589 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
Sh3rf1Q69ZI1 Mirt1-201ENSMUST00000180489 5292 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
Sh3rf1Q69ZI1 Fcgrt-201ENSMUST00000003512 1770 ntAPPRIS P2 TSL 1 (best) BASIC16.94■□□□□ 0.3
Sh3rf1Q69ZI1 Mgat1-201ENSMUST00000081794 2976 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Sh3rf1Q69ZI1 Dpm1-209ENSMUST00000154111 2293 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Sh3rf1Q69ZI1 Rtn3-201ENSMUST00000025667 2841 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Sh3rf1Q69ZI1 Cbx8-201ENSMUST00000026663 3580 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Sh3rf1Q69ZI1 Bmt2-202ENSMUST00000203078 4462 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
Sh3rf1Q69ZI1 Naa35-201ENSMUST00000022038 3793 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Sh3rf1Q69ZI1 Eif1a-202ENSMUST00000168382 1750 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Sh3rf1Q69ZI1 Map3k5-201ENSMUST00000095806 5450 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
Sh3rf1Q69ZI1 Plcl2-201ENSMUST00000043938 4050 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Sh3rf1Q69ZI1 Hilpda-202ENSMUST00000115289 658 ntAPPRIS P1 TSL 3 BASIC16.93■□□□□ 0.3
Sh3rf1Q69ZI1 Ccnd3-ps-201ENSMUST00000117963 881 ntBASIC16.93■□□□□ 0.3
Sh3rf1Q69ZI1 Khdc3-204ENSMUST00000173734 1228 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
Sh3rf1Q69ZI1 Mir2861-201ENSMUST00000175539 82 ntBASIC16.93■□□□□ 0.3
Sh3rf1Q69ZI1 Uqcr11-201ENSMUST00000020372 445 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Sh3rf1Q69ZI1 Fxyd1-208ENSMUST00000205807 539 ntTSL 3 BASIC16.93■□□□□ 0.3
Sh3rf1Q69ZI1 Fuz-209ENSMUST00000208179 1164 ntTSL 5 BASIC16.93■□□□□ 0.3
Sh3rf1Q69ZI1 Rpf1-201ENSMUST00000029838 1661 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Sh3rf1Q69ZI1 Dlx1-201ENSMUST00000037119 4111 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Sh3rf1Q69ZI1 Hif3a-201ENSMUST00000037762 2206 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
Sh3rf1Q69ZI1 Nipsnap3b-201ENSMUST00000015391 1552 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Retrieved 100 of 76,532 protein–RNA pairs in 37.5 ms