Protein–RNA interactions for Protein: Q62158

Trim27, Zinc finger protein RFP, mousemouse

Predictions only

Length 513 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim27Q62158 Ppdpf-201ENSMUST00000016488 1160 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Trim27Q62158 4930579K19Rik-202ENSMUST00000190541 632 ntTSL 2 BASIC20.55■□□□□ 0.88
Trim27Q62158 Pcyox1-206ENSMUST00000204116 546 ntTSL 5 BASIC20.55■□□□□ 0.88
Trim27Q62158 Mcoln2-202ENSMUST00000098524 2492 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
Trim27Q62158 Kcnq2-201ENSMUST00000016491 3067 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Trim27Q62158 Wnk2-202ENSMUST00000049265 6738 ntAPPRIS ALT2 TSL 5 BASIC20.55■□□□□ 0.88
Trim27Q62158 Gm10461-201ENSMUST00000202073 4786 ntBASIC20.55■□□□□ 0.88
Trim27Q62158 Gnb3-201ENSMUST00000024206 1846 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Trim27Q62158 Ppp1r9b-201ENSMUST00000038696 4508 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
Trim27Q62158 Gm20628-201ENSMUST00000177363 3215 ntBASIC20.55■□□□□ 0.88
Trim27Q62158 Fbxo17-203ENSMUST00000108279 1563 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Trim27Q62158 Abhd13-201ENSMUST00000048216 5074 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Trim27Q62158 Esrrb-201ENSMUST00000021680 2136 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
Trim27Q62158 Dcdc2c-206ENSMUST00000221349 2209 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
Trim27Q62158 Smad5-203ENSMUST00000109876 4570 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Trim27Q62158 Wnk2-201ENSMUST00000035538 6630 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
Trim27Q62158 Gm44965-201ENSMUST00000204121 360 ntAPPRIS P1 TSL 3 BASIC20.54■□□□□ 0.88
Trim27Q62158 Iscu-201ENSMUST00000026937 957 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Trim27Q62158 Sox6os-201ENSMUST00000032900 420 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Trim27Q62158 Chmp2b-201ENSMUST00000004965 1838 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Trim27Q62158 Cgn-204ENSMUST00000155485 2361 ntTSL 2 BASIC20.54■□□□□ 0.88
Trim27Q62158 Secisbp2-202ENSMUST00000110044 1915 ntTSL 2 BASIC20.54■□□□□ 0.88
Trim27Q62158 9530018F02Rik-201ENSMUST00000219513 2599 ntBASIC20.54■□□□□ 0.88
Trim27Q62158 Vmn1r17-201ENSMUST00000227186 2234 ntAPPRIS P2 BASIC20.54■□□□□ 0.88
Trim27Q62158 Acsl3-205ENSMUST00000142704 2976 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Trim27Q62158 Sox14-201ENSMUST00000054819 2065 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
Trim27Q62158 Tbx3os2-201ENSMUST00000135385 1345 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Trim27Q62158 Gm19569-202ENSMUST00000184658 1305 ntTSL 2 BASIC20.53■□□□□ 0.88
Trim27Q62158 Il9r-204ENSMUST00000142396 1542 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
Trim27Q62158 Pdzd8-201ENSMUST00000099274 7076 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Trim27Q62158 Zfp367-202ENSMUST00000117241 2753 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
Trim27Q62158 Ebf1-203ENSMUST00000109268 2864 ntAPPRIS ALT1 TSL 5 BASIC20.53■□□□□ 0.88
Trim27Q62158 Tmtc1-201ENSMUST00000060095 8383 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Trim27Q62158 Zfp622-201ENSMUST00000061875 2802 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Trim27Q62158 Mxi1-201ENSMUST00000003870 5156 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Trim27Q62158 Taco1os-201ENSMUST00000140736 644 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Trim27Q62158 Spata25-201ENSMUST00000017911 786 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Trim27Q62158 Gm19426-201ENSMUST00000181711 726 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
Trim27Q62158 3110070M22Rik-201ENSMUST00000099148 1123 ntAPPRIS P1 BASIC20.53■□□□□ 0.88
Trim27Q62158 Ubxn11-202ENSMUST00000074690 1573 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
Trim27Q62158 Sdf4-203ENSMUST00000105578 1654 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Trim27Q62158 Nox4-202ENSMUST00000068829 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
Trim27Q62158 Dbnl-202ENSMUST00000102928 2295 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
Trim27Q62158 Fancg-201ENSMUST00000030165 2771 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Trim27Q62158 Mink1-201ENSMUST00000072237 4994 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
Trim27Q62158 Aatk-203ENSMUST00000103020 5687 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
Trim27Q62158 Igdcc3-201ENSMUST00000034961 3146 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
Trim27Q62158 Il3ra-203ENSMUST00000224163 2315 ntAPPRIS P2 BASIC20.53■□□□□ 0.88
Trim27Q62158 4930448E22Rik-202ENSMUST00000215242 2102 ntTSL 5 BASIC20.53■□□□□ 0.88
Trim27Q62158 Arpc5-201ENSMUST00000077755 1914 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Trim27Q62158 Hand1-203ENSMUST00000160392 1806 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Trim27Q62158 Uts2r-201ENSMUST00000039044 1703 ntAPPRIS P1 BASIC20.53■□□□□ 0.88
Trim27Q62158 Evx1-201ENSMUST00000031787 2877 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Trim27Q62158 Arhgef17-204ENSMUST00000209041 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
Trim27Q62158 Gm37166-201ENSMUST00000195473 2474 ntBASIC20.52■□□□□ 0.88
Trim27Q62158 Syt9-201ENSMUST00000073459 3817 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Trim27Q62158 H2-Q10-202ENSMUST00000174525 1991 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
Trim27Q62158 Gatc-201ENSMUST00000139167 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Trim27Q62158 Man1c1-202ENSMUST00000054096 4715 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
Trim27Q62158 Dusp14-205ENSMUST00000164891 1454 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Trim27Q62158 Sap18-203ENSMUST00000111269 459 ntTSL 2 BASIC20.52■□□□□ 0.88
Trim27Q62158 Psmd13-209ENSMUST00000164681 726 ntTSL 5 BASIC20.52■□□□□ 0.88
Trim27Q62158 Was-201ENSMUST00000033505 2114 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Trim27Q62158 Ptcra-201ENSMUST00000041012 1283 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Trim27Q62158 Mettl21a-201ENSMUST00000053469 2666 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Trim27Q62158 Atp2c1-204ENSMUST00000112558 5642 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.88
Trim27Q62158 Apbb1-205ENSMUST00000187057 1630 ntTSL 5 BASIC20.52■□□□□ 0.88
Trim27Q62158 Npm1-201ENSMUST00000075641 1633 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Trim27Q62158 Gm26663-201ENSMUST00000181105 1882 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
Trim27Q62158 Commd7-202ENSMUST00000109782 1343 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
Trim27Q62158 Sprtn-201ENSMUST00000034467 4464 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Trim27Q62158 Slc35f2-201ENSMUST00000048670 2558 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Trim27Q62158 Disc1-201ENSMUST00000074562 2597 ntAPPRIS ALT2 TSL 5 BASIC20.51■□□□□ 0.87
Trim27Q62158 Disc1-203ENSMUST00000098311 2597 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
Trim27Q62158 Zfp264-201ENSMUST00000208656 1563 ntBASIC20.51■□□□□ 0.87
Trim27Q62158 Ccdc6-203ENSMUST00000147545 5511 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
Trim27Q62158 Gm11748-201ENSMUST00000153825 1498 ntTSL 2 BASIC20.51■□□□□ 0.87
Trim27Q62158 Vim-201ENSMUST00000028062 2193 ntAPPRIS P2 TSL 1 (best) BASIC20.51■□□□□ 0.87
Trim27Q62158 Sh2b3-201ENSMUST00000040308 2530 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
Trim27Q62158 Cd5-201ENSMUST00000025571 2069 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Trim27Q62158 AA467197-202ENSMUST00000110512 751 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Trim27Q62158 Gpha2-202ENSMUST00000113526 762 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
Trim27Q62158 Tmem80-202ENSMUST00000126510 959 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
Trim27Q62158 Gm26039-201ENSMUST00000158152 144 ntBASIC20.51■□□□□ 0.87
Trim27Q62158 Rpl14-201ENSMUST00000165532 1009 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Trim27Q62158 Bcl7c-205ENSMUST00000205977 891 ntTSL 2 BASIC20.51■□□□□ 0.87
Trim27Q62158 Ttc32-203ENSMUST00000219488 768 ntTSL 3 BASIC20.51■□□□□ 0.87
Trim27Q62158 Gpha2-201ENSMUST00000025698 609 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Trim27Q62158 Snapc3-202ENSMUST00000071544 942 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
Trim27Q62158 Krt28-201ENSMUST00000006963 1624 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Trim27Q62158 Cops7b-201ENSMUST00000027446 2231 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Trim27Q62158 Gm26803-201ENSMUST00000181705 2011 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
Trim27Q62158 Gm26627-201ENSMUST00000181540 1487 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Trim27Q62158 A830073O21Rik-202ENSMUST00000205693 3096 ntBASIC20.5■□□□□ 0.87
Trim27Q62158 Myo16-204ENSMUST00000208309 2462 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Trim27Q62158 Wrb-201ENSMUST00000023913 2495 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Trim27Q62158 Ahr-202ENSMUST00000116436 5548 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Trim27Q62158 Sctr-201ENSMUST00000072886 2012 ntAPPRIS P3 TSL 2 BASIC20.5■□□□□ 0.87
Trim27Q62158 Mettl27-205ENSMUST00000111221 1796 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Trim27Q62158 Rassf1-204ENSMUST00000122225 1783 ntTSL 5 BASIC20.5■□□□□ 0.87
Retrieved 100 of 76,532 protein–RNA pairs in 61.7 ms