Protein–RNA interactions for Protein: Q5SPW0

Vps54, Vacuolar protein sorting-associated protein 54, mousemouse

Predictions only

Length 977 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps54Q5SPW0 Sft2d2-201ENSMUST00000043338 5535 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Vps54Q5SPW0 Gpr161-202ENSMUST00000178700 1827 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
Vps54Q5SPW0 Psen2-205ENSMUST00000111108 1997 ntAPPRIS P2 TSL 1 (best) BASIC20.08■□□□□ 0.81
Vps54Q5SPW0 Ewsr1-203ENSMUST00000079949 2588 ntAPPRIS P3 TSL 1 (best) BASIC20.08■□□□□ 0.81
Vps54Q5SPW0 Bean1-204ENSMUST00000171018 3386 ntAPPRIS P4 TSL 1 (best) BASIC20.08■□□□□ 0.81
Vps54Q5SPW0 Gm19439-201ENSMUST00000198195 2273 ntBASIC20.08■□□□□ 0.81
Vps54Q5SPW0 Rcc1-201ENSMUST00000030726 2278 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
Vps54Q5SPW0 Cxcl12-202ENSMUST00000112866 1878 ntAPPRIS ALT1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Vps54Q5SPW0 Gm11950-201ENSMUST00000121615 838 ntBASIC20.08■□□□□ 0.81
Vps54Q5SPW0 Atrn-201ENSMUST00000028781 8745 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Vps54Q5SPW0 Trpc4ap-201ENSMUST00000041059 3204 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.8
Vps54Q5SPW0 Gm10461-201ENSMUST00000202073 4786 ntBASIC20.08■□□□□ 0.8
Vps54Q5SPW0 Nr1h2-204ENSMUST00000107912 1839 ntAPPRIS P3 TSL 1 (best) BASIC20.08■□□□□ 0.8
Vps54Q5SPW0 Lrrfip1-212ENSMUST00000189617 2155 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.8
Vps54Q5SPW0 Slc35e1-202ENSMUST00000152080 4383 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
Vps54Q5SPW0 Nf2-205ENSMUST00000109910 4720 ntAPPRIS P3 TSL 1 (best) BASIC20.08■□□□□ 0.8
Vps54Q5SPW0 Gm26568-201ENSMUST00000180496 1594 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
Vps54Q5SPW0 Zfp264-201ENSMUST00000208656 1563 ntBASIC20.08■□□□□ 0.8
Vps54Q5SPW0 Zkscan4-202ENSMUST00000225845 1506 ntBASIC20.07■□□□□ 0.8
Vps54Q5SPW0 Zfp746-201ENSMUST00000073124 3651 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
Vps54Q5SPW0 Zfp644-205ENSMUST00000112698 5689 ntAPPRIS P2 TSL 5 BASIC20.07■□□□□ 0.8
Vps54Q5SPW0 Parg-208ENSMUST00000170840 2894 ntAPPRIS ALT2 TSL 5 BASIC20.07■□□□□ 0.8
Vps54Q5SPW0 Wdr55-201ENSMUST00000049323 1498 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Vps54Q5SPW0 Large2-215ENSMUST00000176810 2477 ntAPPRIS ALT2 TSL 5 BASIC20.07■□□□□ 0.8
Vps54Q5SPW0 Gm12359-202ENSMUST00000141696 713 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
Vps54Q5SPW0 Gm12359-203ENSMUST00000153181 680 ntTSL 3 BASIC20.07■□□□□ 0.8
Vps54Q5SPW0 Gm44973-201ENSMUST00000207050 1003 ntAPPRIS P1 TSL 3 BASIC20.07■□□□□ 0.8
Vps54Q5SPW0 Mrpl36-203ENSMUST00000222030 680 ntAPPRIS P1 TSL 3 BASIC20.07■□□□□ 0.8
Vps54Q5SPW0 Stradb-201ENSMUST00000027185 2960 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Vps54Q5SPW0 Rad51d-203ENSMUST00000092844 1228 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
Vps54Q5SPW0 Trim54-202ENSMUST00000202769 1408 ntAPPRIS ALT1 TSL 5 BASIC20.07■□□□□ 0.8
Vps54Q5SPW0 Ddn-201ENSMUST00000075444 3740 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Vps54Q5SPW0 Ppp1r9b-201ENSMUST00000038696 4508 ntAPPRIS P2 TSL 1 (best) BASIC20.07■□□□□ 0.8
Vps54Q5SPW0 Gm26548-201ENSMUST00000181165 2029 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
Vps54Q5SPW0 Rev1-201ENSMUST00000027251 4262 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Vps54Q5SPW0 4933427J07Rik-201ENSMUST00000156275 1533 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
Vps54Q5SPW0 Itgb4-210ENSMUST00000169928 6160 ntAPPRIS P2 TSL 5 BASIC20.07■□□□□ 0.8
Vps54Q5SPW0 Zmynd19-201ENSMUST00000028350 3903 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Vps54Q5SPW0 Atrnl1-201ENSMUST00000077282 6581 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Vps54Q5SPW0 Syt9-201ENSMUST00000073459 3817 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Vps54Q5SPW0 Sort1-201ENSMUST00000102632 6796 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
Vps54Q5SPW0 Bnip2-203ENSMUST00000117450 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
Vps54Q5SPW0 Slc35e3-201ENSMUST00000079041 3489 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Vps54Q5SPW0 Sf1-202ENSMUST00000113487 2649 ntAPPRIS ALT1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Vps54Q5SPW0 Znhit2-201ENSMUST00000162726 1281 ntAPPRIS P1 BASIC20.06■□□□□ 0.8
Vps54Q5SPW0 Flg-207ENSMUST00000180293 768 ntAPPRIS ALT2 BASIC20.06■□□□□ 0.8
Vps54Q5SPW0 Snhg4-201ENSMUST00000181664 1190 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Vps54Q5SPW0 Gm19935-201ENSMUST00000209208 979 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Vps54Q5SPW0 1700022H01Rik-201ENSMUST00000219142 387 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Vps54Q5SPW0 Sdhaf4-201ENSMUST00000027338 683 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Vps54Q5SPW0 Insl3-201ENSMUST00000034261 623 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Vps54Q5SPW0 Tsr3-201ENSMUST00000063574 1192 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Vps54Q5SPW0 Idh1-201ENSMUST00000097709 2302 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Vps54Q5SPW0 Ube2k-201ENSMUST00000142407 4893 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Vps54Q5SPW0 Drd2-201ENSMUST00000075764 2547 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Vps54Q5SPW0 Nrn1-201ENSMUST00000037623 1619 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Vps54Q5SPW0 Tacc3-203ENSMUST00000114426 2187 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
Vps54Q5SPW0 Pacsin3-202ENSMUST00000059566 1867 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Vps54Q5SPW0 Atf4-201ENSMUST00000109605 1724 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Vps54Q5SPW0 Sertad4-204ENSMUST00000155579 3350 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Vps54Q5SPW0 Dmap1-201ENSMUST00000102687 1566 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Vps54Q5SPW0 Tm9sf1-205ENSMUST00000122358 2517 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Vps54Q5SPW0 Gm36858-201ENSMUST00000194501 2391 ntBASIC20.05■□□□□ 0.8
Vps54Q5SPW0 Fgf8-205ENSMUST00000111927 843 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
Vps54Q5SPW0 Gm7284-201ENSMUST00000131667 944 ntBASIC20.05■□□□□ 0.8
Vps54Q5SPW0 Mrps12-204ENSMUST00000171183 883 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
Vps54Q5SPW0 Cd70-201ENSMUST00000019633 842 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Vps54Q5SPW0 Rpl13a-204ENSMUST00000209711 495 ntTSL 3 BASIC20.05■□□□□ 0.8
Vps54Q5SPW0 Gm7367-201ENSMUST00000057611 492 ntBASIC20.05■□□□□ 0.8
Vps54Q5SPW0 Nkx2-6-201ENSMUST00000062437 1134 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Vps54Q5SPW0 Hist1h2ad-201ENSMUST00000090776 572 ntAPPRIS P1 BASIC20.05■□□□□ 0.8
Vps54Q5SPW0 Coro1a-201ENSMUST00000032949 1660 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Vps54Q5SPW0 Agpat3-203ENSMUST00000105388 3681 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
Vps54Q5SPW0 Neurl1b-201ENSMUST00000053020 6195 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Vps54Q5SPW0 Fam3a-206ENSMUST00000114143 1899 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Vps54Q5SPW0 Foxp4-204ENSMUST00000113265 3999 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
Vps54Q5SPW0 Rad23a-202ENSMUST00000109761 1842 ntAPPRIS ALT1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Vps54Q5SPW0 Nmt2-203ENSMUST00000102989 2162 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
Vps54Q5SPW0 Tmprss5-201ENSMUST00000070390 2047 ntAPPRIS P2 TSL 1 (best) BASIC20.04■□□□□ 0.8
Vps54Q5SPW0 1810013L24Rik-201ENSMUST00000023150 4066 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Vps54Q5SPW0 Garem1-201ENSMUST00000049260 4923 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Vps54Q5SPW0 A730015C16Rik-201ENSMUST00000164855 1221 ntAPPRIS P1 BASIC20.04■□□□□ 0.8
Vps54Q5SPW0 Gm21362-201ENSMUST00000194272 928 ntBASIC20.04■□□□□ 0.8
Vps54Q5SPW0 AC130711.1-201ENSMUST00000224277 906 ntAPPRIS P1 BASIC20.04■□□□□ 0.8
Vps54Q5SPW0 Odf3b-201ENSMUST00000049968 1040 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Vps54Q5SPW0 Zkscan2-203ENSMUST00000128217 2218 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Vps54Q5SPW0 Ssfa2-203ENSMUST00000111788 4976 ntAPPRIS ALT2 TSL 5 BASIC20.04■□□□□ 0.8
Vps54Q5SPW0 Nisch-208ENSMUST00000165981 2415 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
Vps54Q5SPW0 Ttyh1-217ENSMUST00000206869 1491 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Vps54Q5SPW0 Nfix-204ENSMUST00000109764 5476 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Vps54Q5SPW0 Gfy-201ENSMUST00000179443 1849 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
Vps54Q5SPW0 Nosip-201ENSMUST00000003513 1814 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
Vps54Q5SPW0 St8sia5-201ENSMUST00000075290 1841 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Vps54Q5SPW0 Papola-203ENSMUST00000163473 2544 ntTSL 5 BASIC20.04■□□□□ 0.8
Vps54Q5SPW0 1700066B19Rik-201ENSMUST00000097617 2504 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Vps54Q5SPW0 Cdv3-202ENSMUST00000072249 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
Vps54Q5SPW0 Slc2a13-202ENSMUST00000109283 6536 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Vps54Q5SPW0 Ptpdc1-204ENSMUST00000222028 3164 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
Vps54Q5SPW0 Nit1-202ENSMUST00000111295 1335 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
Vps54Q5SPW0 Atoh1-201ENSMUST00000101351 2121 ntAPPRIS P1 BASIC20.03■□□□□ 0.8
Retrieved 100 of 76,532 protein–RNA pairs in 78.4 ms