Protein–RNA interactions for Protein: Q5R1C3

Trav3-3, T cell receptor alpha variable 3-3 (Fragment), mousemouse

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav3-3Q5R1C3 Cacnb4-201ENSMUST00000078324 8225 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Trav3-3Q5R1C3 Sorbs1-208ENSMUST00000224247 2688 ntAPPRIS ALT2 BASIC12.62□□□□□ -0.39
Trav3-3Q5R1C3 Brap-201ENSMUST00000031414 3744 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Trav3-3Q5R1C3 Podxl2-201ENSMUST00000038409 1994 ntAPPRIS P3 TSL 1 (best) BASIC12.61□□□□□ -0.39
Trav3-3Q5R1C3 Parg-202ENSMUST00000163350 3374 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
Trav3-3Q5R1C3 Anapc16-204ENSMUST00000182898 1852 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Trav3-3Q5R1C3 Casp2-201ENSMUST00000031895 3529 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Trav3-3Q5R1C3 Mindy4-203ENSMUST00000204842 2211 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Trav3-3Q5R1C3 Dhx33-202ENSMUST00000108527 5184 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Trav3-3Q5R1C3 Ush1g-201ENSMUST00000103037 3306 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Trav3-3Q5R1C3 Stxbp1-201ENSMUST00000050000 3892 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Trav3-3Q5R1C3 Nyap1-204ENSMUST00000212152 2499 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
Trav3-3Q5R1C3 Pip4k2a-201ENSMUST00000006912 3477 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Trav3-3Q5R1C3 Cgn-202ENSMUST00000107273 5016 ntAPPRIS P3 TSL 1 (best) BASIC12.61□□□□□ -0.39
Trav3-3Q5R1C3 Ppm1m-203ENSMUST00000140761 1846 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Trav3-3Q5R1C3 Dnajb2-208ENSMUST00000188346 1823 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Trav3-3Q5R1C3 Nsmce3-201ENSMUST00000094331 5946 ntAPPRIS P1 BASIC12.61□□□□□ -0.39
Trav3-3Q5R1C3 Thap8-201ENSMUST00000014072 1182 ntAPPRIS ALT2 TSL 5 BASIC12.61□□□□□ -0.39
Trav3-3Q5R1C3 Snhg20-202ENSMUST00000149822 593 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Trav3-3Q5R1C3 Cdc34b-202ENSMUST00000188741 1252 ntBASIC12.61□□□□□ -0.39
Trav3-3Q5R1C3 Gm43060-201ENSMUST00000200621 289 ntBASIC12.61□□□□□ -0.39
Trav3-3Q5R1C3 Cdc34-201ENSMUST00000020550 1266 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Trav3-3Q5R1C3 Prmt1-210ENSMUST00000208829 621 ntTSL 5 BASIC12.61□□□□□ -0.39
Trav3-3Q5R1C3 Cdc34b-201ENSMUST00000021240 1233 ntAPPRIS P1 BASIC12.61□□□□□ -0.39
Trav3-3Q5R1C3 Sdf2l1-201ENSMUST00000023453 1108 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Trav3-3Q5R1C3 Zcchc13-201ENSMUST00000033692 1085 ntAPPRIS P1 BASIC12.61□□□□□ -0.39
Trav3-3Q5R1C3 Ptrh1-201ENSMUST00000066352 952 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Trav3-3Q5R1C3 Kctd17-201ENSMUST00000089414 1180 ntAPPRIS ALT2 TSL 5 BASIC12.61□□□□□ -0.39
Trav3-3Q5R1C3 Rpl21-203ENSMUST00000099272 1067 ntAPPRIS P1 TSL 3 BASIC12.61□□□□□ -0.39
Trav3-3Q5R1C3 Ntrk2-205ENSMUST00000224402 2284 ntBASIC12.61□□□□□ -0.39
Trav3-3Q5R1C3 Mydgf-201ENSMUST00000019723 1710 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Trav3-3Q5R1C3 B3galt6-201ENSMUST00000052185 3184 ntAPPRIS P1 BASIC12.61□□□□□ -0.39
Trav3-3Q5R1C3 Klhdc10-201ENSMUST00000068240 3951 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Trav3-3Q5R1C3 Smad1-203ENSMUST00000109885 3775 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Trav3-3Q5R1C3 Cdo1-201ENSMUST00000035804 1530 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Trav3-3Q5R1C3 Map4k5-202ENSMUST00000110567 4250 ntTSL 5 BASIC12.61□□□□□ -0.39
Trav3-3Q5R1C3 Gm30003-201ENSMUST00000200700 1433 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Trav3-3Q5R1C3 6530402F18Rik-203ENSMUST00000155949 4301 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Trav3-3Q5R1C3 Sh2d4a-201ENSMUST00000066594 2718 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Trav3-3Q5R1C3 Malt1-201ENSMUST00000049248 5073 ntAPPRIS P2 TSL 1 (best) BASIC12.6□□□□□ -0.39
Trav3-3Q5R1C3 Samd14-201ENSMUST00000055947 3318 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Trav3-3Q5R1C3 Apeh-206ENSMUST00000193254 2518 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Trav3-3Q5R1C3 Rnf220-203ENSMUST00000102690 1842 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Trav3-3Q5R1C3 Fev-201ENSMUST00000068631 1490 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Trav3-3Q5R1C3 BC024978-204ENSMUST00000179391 1748 ntAPPRIS P3 TSL 5 BASIC12.6□□□□□ -0.39
Trav3-3Q5R1C3 Slc12a5-201ENSMUST00000099092 6028 ntAPPRIS P2 TSL 1 (best) BASIC12.6□□□□□ -0.39
Trav3-3Q5R1C3 D17Wsu92e-202ENSMUST00000114859 3522 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.39
Trav3-3Q5R1C3 Fut7-203ENSMUST00000114278 1990 ntAPPRIS P3 TSL 1 (best) BASIC12.6□□□□□ -0.39
Trav3-3Q5R1C3 Fut7-201ENSMUST00000041654 1970 ntAPPRIS P3 TSL 5 BASIC12.6□□□□□ -0.39
Trav3-3Q5R1C3 Gm5934-201ENSMUST00000120734 2588 ntAPPRIS P1 TSL 5 BASIC12.6□□□□□ -0.39
Trav3-3Q5R1C3 Tbc1d1-203ENSMUST00000119756 4760 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.39
Trav3-3Q5R1C3 Arf3-201ENSMUST00000053183 3579 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Trav3-3Q5R1C3 1810041L15Rik-203ENSMUST00000189248 5296 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Trav3-3Q5R1C3 Lhpp-202ENSMUST00000106170 999 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Trav3-3Q5R1C3 Plcb1-205ENSMUST00000131552 7202 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Trav3-3Q5R1C3 Ccna2-201ENSMUST00000029270 2965 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Trav3-3Q5R1C3 Scn1b-203ENSMUST00000211945 1501 ntAPPRIS P1 TSL 5 BASIC12.6□□□□□ -0.39
Trav3-3Q5R1C3 Slc25a23-201ENSMUST00000040280 3362 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Trav3-3Q5R1C3 Apbb1-219ENSMUST00000191601 2690 ntAPPRIS P4 TSL 5 BASIC12.6□□□□□ -0.39
Trav3-3Q5R1C3 Fam8a1-201ENSMUST00000099547 3664 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Trav3-3Q5R1C3 Btd-201ENSMUST00000090147 2324 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Trav3-3Q5R1C3 Gps1-202ENSMUST00000116305 1827 ntAPPRIS P2 TSL 1 (best) BASIC12.6□□□□□ -0.39
Trav3-3Q5R1C3 Asic1-205ENSMUST00000228185 1818 ntBASIC12.6□□□□□ -0.39
Trav3-3Q5R1C3 Cryzl1-201ENSMUST00000073466 1965 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Trav3-3Q5R1C3 Pi4kb-202ENSMUST00000107251 2895 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
Trav3-3Q5R1C3 Ambra1-205ENSMUST00000111317 4929 ntTSL 5 BASIC12.59□□□□□ -0.39
Trav3-3Q5R1C3 Usp4-201ENSMUST00000035237 3662 ntAPPRIS P3 TSL 1 (best) BASIC12.59□□□□□ -0.39
Trav3-3Q5R1C3 Grwd1-201ENSMUST00000107723 1898 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Trav3-3Q5R1C3 Galt-202ENSMUST00000108038 1859 ntAPPRIS ALT2 TSL 2 BASIC12.59□□□□□ -0.39
Trav3-3Q5R1C3 Syt12-201ENSMUST00000059295 3581 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Trav3-3Q5R1C3 Kcnj6-202ENSMUST00000099508 3086 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Trav3-3Q5R1C3 Jmjd7-201ENSMUST00000044675 1373 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Trav3-3Q5R1C3 Plxnb1-201ENSMUST00000072093 8649 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Trav3-3Q5R1C3 Myrf-202ENSMUST00000186056 3636 ntAPPRIS ALT2 TSL 1 (best) BASIC12.59□□□□□ -0.39
Trav3-3Q5R1C3 Trmt1-201ENSMUST00000001974 2567 ntAPPRIS P3 TSL 1 (best) BASIC12.59□□□□□ -0.39
Trav3-3Q5R1C3 Stradb-201ENSMUST00000027185 2960 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Trav3-3Q5R1C3 Scaf4-201ENSMUST00000039280 4165 ntAPPRIS P3 TSL 1 (best) BASIC12.59□□□□□ -0.39
Trav3-3Q5R1C3 Lhx2-203ENSMUST00000143783 1696 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
Trav3-3Q5R1C3 Gng5-203ENSMUST00000119130 593 ntTSL 2 BASIC12.59□□□□□ -0.39
Trav3-3Q5R1C3 Gm45121-201ENSMUST00000205396 1153 ntTSL 5 BASIC12.59□□□□□ -0.39
Trav3-3Q5R1C3 Gm19094-201ENSMUST00000209791 1246 ntBASIC12.59□□□□□ -0.39
Trav3-3Q5R1C3 Fam228b-205ENSMUST00000218575 1281 ntAPPRIS ALT2 TSL 2 BASIC12.59□□□□□ -0.39
Trav3-3Q5R1C3 Tmem147-201ENSMUST00000006478 870 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Trav3-3Q5R1C3 Arhgef40-204ENSMUST00000182061 4756 ntAPPRIS ALT2 TSL 1 (best) BASIC12.59□□□□□ -0.39
Trav3-3Q5R1C3 Rbpms2-201ENSMUST00000055844 1987 ntAPPRIS P2 TSL 1 (best) BASIC12.59□□□□□ -0.39
Trav3-3Q5R1C3 Plch2-212ENSMUST00000186598 2119 ntTSL 5 BASIC12.59□□□□□ -0.39
Trav3-3Q5R1C3 Spdya-204ENSMUST00000167641 1891 ntAPPRIS P1 TSL 5 BASIC12.59□□□□□ -0.39
Trav3-3Q5R1C3 Ccno-201ENSMUST00000038404 1875 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Trav3-3Q5R1C3 Eif5a-210ENSMUST00000108613 1343 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Trav3-3Q5R1C3 Slc23a4-205ENSMUST00000201355 2003 ntAPPRIS P1 TSL 5 BASIC12.59□□□□□ -0.39
Trav3-3Q5R1C3 Itga3-201ENSMUST00000001548 4861 ntAPPRIS P3 TSL 1 (best) BASIC12.59□□□□□ -0.39
Trav3-3Q5R1C3 Mob2-205ENSMUST00000211000 1646 ntTSL 5 BASIC12.59□□□□□ -0.39
Trav3-3Q5R1C3 Stard5-201ENSMUST00000075418 2483 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Trav3-3Q5R1C3 Gm43352-201ENSMUST00000196419 3065 ntBASIC12.58□□□□□ -0.39
Trav3-3Q5R1C3 Clec16a-204ENSMUST00000115824 6244 ntAPPRIS ALT2 TSL 5 BASIC12.58□□□□□ -0.39
Trav3-3Q5R1C3 Clec16a-202ENSMUST00000066345 6244 ntAPPRIS P3 TSL 5 BASIC12.58□□□□□ -0.39
Trav3-3Q5R1C3 Dcdc2c-206ENSMUST00000221349 2209 ntAPPRIS P1 TSL 5 BASIC12.58□□□□□ -0.39
Trav3-3Q5R1C3 Cpne6-201ENSMUST00000074225 2201 ntAPPRIS P3 TSL 1 (best) BASIC12.58□□□□□ -0.39
Trav3-3Q5R1C3 Rufy3-205ENSMUST00000198965 3536 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Trav3-3Q5R1C3 Timm17b-201ENSMUST00000033498 2381 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Retrieved 100 of 76,532 protein–RNA pairs in 26.9 ms