Protein–RNA interactions for Protein: Q3ULJ3

Upf3a, MCG3697, isoform CRA_c, mousemouse

Predictions only

Length 422 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3aQ3ULJ3 Foxp1-230ENSMUST00000177437 2468 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
Upf3aQ3ULJ3 Isl2-201ENSMUST00000034869 1854 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Upf3aQ3ULJ3 4930503L19Rik-201ENSMUST00000067556 2291 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
Upf3aQ3ULJ3 Bend6-202ENSMUST00000115161 2231 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Upf3aQ3ULJ3 Arhgef9-216ENSMUST00000197206 2227 ntTSL 5 BASIC17.56■□□□□ 0.4
Upf3aQ3ULJ3 Rassf1-204ENSMUST00000122225 1783 ntTSL 5 BASIC17.56■□□□□ 0.4
Upf3aQ3ULJ3 Rassf1-202ENSMUST00000093786 1787 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Upf3aQ3ULJ3 Eif6-202ENSMUST00000109638 1382 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Upf3aQ3ULJ3 Farp1-201ENSMUST00000026635 4885 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
Upf3aQ3ULJ3 Lysmd4-209ENSMUST00000208998 2110 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
Upf3aQ3ULJ3 Pdgfa-202ENSMUST00000076095 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Upf3aQ3ULJ3 Hirip3-201ENSMUST00000037248 2766 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Upf3aQ3ULJ3 Cpd-201ENSMUST00000021201 7946 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Upf3aQ3ULJ3 Smim22-208ENSMUST00000185147 399 ntAPPRIS ALT2 TSL 2 BASIC17.56■□□□□ 0.4
Upf3aQ3ULJ3 Pard6a-204ENSMUST00000212352 1234 ntTSL 2 BASIC17.56■□□□□ 0.4
Upf3aQ3ULJ3 Fcnb-201ENSMUST00000028179 1170 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Upf3aQ3ULJ3 Psmg3-201ENSMUST00000031531 883 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Upf3aQ3ULJ3 Maneal-201ENSMUST00000064444 2727 ntAPPRIS P1 TSL 3 BASIC17.56■□□□□ 0.4
Upf3aQ3ULJ3 Trpc4ap-202ENSMUST00000103140 3091 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
Upf3aQ3ULJ3 Arih1-207ENSMUST00000171975 6971 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Upf3aQ3ULJ3 Jdp2-202ENSMUST00000171754 1559 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Upf3aQ3ULJ3 Pip5k1c-202ENSMUST00000105327 2551 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
Upf3aQ3ULJ3 Sult2b1-204ENSMUST00000209739 1858 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
Upf3aQ3ULJ3 Tgfb1-201ENSMUST00000002678 2175 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Upf3aQ3ULJ3 Cds2-202ENSMUST00000103181 8396 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Upf3aQ3ULJ3 Atoh1-201ENSMUST00000101351 2121 ntAPPRIS P1 BASIC17.56■□□□□ 0.4
Upf3aQ3ULJ3 Ssx2ip-204ENSMUST00000106153 3446 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
Upf3aQ3ULJ3 Rragd-201ENSMUST00000029946 5055 ntTSL 5 BASIC17.55■□□□□ 0.4
Upf3aQ3ULJ3 Naif1-201ENSMUST00000048431 4650 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Upf3aQ3ULJ3 Negr1-202ENSMUST00000074015 4983 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Upf3aQ3ULJ3 Man1c1-201ENSMUST00000038628 4285 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Upf3aQ3ULJ3 Gal3st1-201ENSMUST00000063004 1879 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Upf3aQ3ULJ3 Hpca-203ENSMUST00000116442 1568 ntAPPRIS P1 TSL 3 BASIC17.55■□□□□ 0.4
Upf3aQ3ULJ3 Kctd14-202ENSMUST00000121987 1210 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Upf3aQ3ULJ3 Uba52-203ENSMUST00000125184 711 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Upf3aQ3ULJ3 Gm15677-201ENSMUST00000152302 766 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Upf3aQ3ULJ3 Krtcap3-208ENSMUST00000201937 889 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
Upf3aQ3ULJ3 Nudt14-203ENSMUST00000221497 355 ntTSL 2 BASIC17.55■□□□□ 0.4
Upf3aQ3ULJ3 Tmem62-201ENSMUST00000067582 2921 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Upf3aQ3ULJ3 Hyls1-201ENSMUST00000115110 1973 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Upf3aQ3ULJ3 Hmbs-201ENSMUST00000077353 1605 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Upf3aQ3ULJ3 Smarca4-202ENSMUST00000098948 6376 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Upf3aQ3ULJ3 Gnb1-202ENSMUST00000105616 3088 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Upf3aQ3ULJ3 Cdk9-202ENSMUST00000120105 1565 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Upf3aQ3ULJ3 Dok3-201ENSMUST00000047877 1546 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Upf3aQ3ULJ3 Nt5dc3-201ENSMUST00000099396 5952 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Upf3aQ3ULJ3 Gm11729-201ENSMUST00000124901 713 ntTSL 3 BASIC17.54■□□□□ 0.4
Upf3aQ3ULJ3 Gm28626-201ENSMUST00000187004 520 ntTSL 2 BASIC17.54■□□□□ 0.4
Upf3aQ3ULJ3 Ogfod2-207ENSMUST00000196627 532 ntTSL 3 BASIC17.54■□□□□ 0.4
Upf3aQ3ULJ3 Gm13830-205ENSMUST00000201195 1155 ntBASIC17.54■□□□□ 0.4
Upf3aQ3ULJ3 AC133183.1-201ENSMUST00000221229 429 ntAPPRIS P1 TSL 3 BASIC17.54■□□□□ 0.4
Upf3aQ3ULJ3 Rpl27-201ENSMUST00000077856 614 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Upf3aQ3ULJ3 Trim44-201ENSMUST00000102573 5612 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Upf3aQ3ULJ3 Rarb-207ENSMUST00000225921 2756 ntBASIC17.54■□□□□ 0.4
Upf3aQ3ULJ3 Men1-205ENSMUST00000113501 2508 ntTSL 5 BASIC17.54■□□□□ 0.4
Upf3aQ3ULJ3 Gm14261-201ENSMUST00000145105 1429 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Upf3aQ3ULJ3 Mcfd2-201ENSMUST00000024963 1823 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Upf3aQ3ULJ3 Zbtb5-204ENSMUST00000180217 4708 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
Upf3aQ3ULJ3 Mfsd10-203ENSMUST00000114331 1754 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Upf3aQ3ULJ3 B4galt3-205ENSMUST00000126699 1758 ntTSL 5 BASIC17.53■□□□□ 0.4
Upf3aQ3ULJ3 Irx5-201ENSMUST00000034184 2450 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Upf3aQ3ULJ3 Erich2-203ENSMUST00000134607 1659 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
Upf3aQ3ULJ3 Selenoh-201ENSMUST00000102646 783 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
Upf3aQ3ULJ3 Gm7862-201ENSMUST00000121461 292 ntBASIC17.53■□□□□ 0.4
Upf3aQ3ULJ3 Selenoh-206ENSMUST00000189988 390 ntTSL 3 BASIC17.53■□□□□ 0.4
Upf3aQ3ULJ3 Gm42456-201ENSMUST00000196840 387 ntTSL 3 BASIC17.53■□□□□ 0.4
Upf3aQ3ULJ3 Rnf13-209ENSMUST00000199041 1062 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Upf3aQ3ULJ3 Gm2651-201ENSMUST00000203560 838 ntBASIC17.53■□□□□ 0.4
Upf3aQ3ULJ3 Gm6376-201ENSMUST00000209407 580 ntBASIC17.53■□□□□ 0.4
Upf3aQ3ULJ3 Gm45669-201ENSMUST00000209808 459 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Upf3aQ3ULJ3 Spata33-204ENSMUST00000212346 715 ntTSL 2 BASIC17.53■□□□□ 0.4
Upf3aQ3ULJ3 Cenpp-201ENSMUST00000021818 1144 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Upf3aQ3ULJ3 Inip-202ENSMUST00000107526 1438 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Upf3aQ3ULJ3 Haghl-201ENSMUST00000077938 1405 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Upf3aQ3ULJ3 Pcdh7-201ENSMUST00000068110 5611 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
Upf3aQ3ULJ3 Adpgk-205ENSMUST00000217570 2484 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
Upf3aQ3ULJ3 Tmem176a-201ENSMUST00000101426 1540 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Upf3aQ3ULJ3 Fam3a-206ENSMUST00000114143 1899 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Upf3aQ3ULJ3 Stk33-201ENSMUST00000090414 2221 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.4
Upf3aQ3ULJ3 Atp11a-201ENSMUST00000033818 7549 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
Upf3aQ3ULJ3 Pitpnm2-210ENSMUST00000162812 6952 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.4
Upf3aQ3ULJ3 Gm44357-201ENSMUST00000195897 142 ntBASIC17.52■□□□□ 0.4
Upf3aQ3ULJ3 Gm19658-201ENSMUST00000196231 138 ntBASIC17.52■□□□□ 0.4
Upf3aQ3ULJ3 Gm44367-201ENSMUST00000196836 138 ntBASIC17.52■□□□□ 0.4
Upf3aQ3ULJ3 Gm44350-201ENSMUST00000197197 138 ntBASIC17.52■□□□□ 0.4
Upf3aQ3ULJ3 Gm44390-201ENSMUST00000197533 144 ntBASIC17.52■□□□□ 0.4
Upf3aQ3ULJ3 Gm44313-201ENSMUST00000198018 138 ntBASIC17.52■□□□□ 0.4
Upf3aQ3ULJ3 Gm44486-201ENSMUST00000198508 138 ntBASIC17.52■□□□□ 0.4
Upf3aQ3ULJ3 Gm44314-201ENSMUST00000199263 138 ntBASIC17.52■□□□□ 0.4
Upf3aQ3ULJ3 Gm44394-201ENSMUST00000199558 138 ntBASIC17.52■□□□□ 0.4
Upf3aQ3ULJ3 Gm44484-201ENSMUST00000199873 138 ntBASIC17.52■□□□□ 0.4
Upf3aQ3ULJ3 Gm44466-201ENSMUST00000200264 138 ntBASIC17.52■□□□□ 0.4
Upf3aQ3ULJ3 Gm44359-201ENSMUST00000200671 138 ntBASIC17.52■□□□□ 0.4
Upf3aQ3ULJ3 Lat-206ENSMUST00000206793 1215 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.4
Upf3aQ3ULJ3 Zfyve21-204ENSMUST00000221375 1265 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
Upf3aQ3ULJ3 Rgp1-201ENSMUST00000030190 1292 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Upf3aQ3ULJ3 Gm5867-201ENSMUST00000063197 592 ntBASIC17.52■□□□□ 0.4
Upf3aQ3ULJ3 Gm10300-201ENSMUST00000094662 2296 ntAPPRIS P1 BASIC17.52■□□□□ 0.4
Upf3aQ3ULJ3 Hoxaas2-202ENSMUST00000155922 1567 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
Upf3aQ3ULJ3 Car9-201ENSMUST00000030183 2023 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Retrieved 100 of 76,532 protein–RNA pairs in 22.2 ms