Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Lzts2-203ENSMUST00000179108 2781 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Limch1Q3UH68 Ggnbp2-201ENSMUST00000018547 2478 ntTSL 5 BASIC19.67■□□□□ 0.74
Limch1Q3UH68 Slc7a5-201ENSMUST00000045557 3517 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Limch1Q3UH68 Ankrd63-201ENSMUST00000104937 4861 ntAPPRIS P1 BASIC19.67■□□□□ 0.74
Limch1Q3UH68 Mrpl39-201ENSMUST00000116584 2294 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Limch1Q3UH68 Matn4-201ENSMUST00000103103 2304 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Limch1Q3UH68 Fbxo42-201ENSMUST00000030757 5934 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Limch1Q3UH68 Nudt16-201ENSMUST00000035179 1631 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Limch1Q3UH68 AA467197-202ENSMUST00000110512 751 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Limch1Q3UH68 Gm27000-201ENSMUST00000182943 842 ntBASIC19.67■□□□□ 0.74
Limch1Q3UH68 Cnih3-204ENSMUST00000209607 564 ntTSL 5 BASIC19.67■□□□□ 0.74
Limch1Q3UH68 Spata33-206ENSMUST00000212637 569 ntAPPRIS ALT2 TSL 2 BASIC19.67■□□□□ 0.74
Limch1Q3UH68 Gm18101-201ENSMUST00000215769 548 ntBASIC19.67■□□□□ 0.74
Limch1Q3UH68 AC130711.1-201ENSMUST00000224277 906 ntAPPRIS P1 BASIC19.67■□□□□ 0.74
Limch1Q3UH68 Lce1i-201ENSMUST00000090866 731 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Limch1Q3UH68 Lzts2-201ENSMUST00000039016 2825 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Limch1Q3UH68 Fam135a-201ENSMUST00000027337 5536 ntAPPRIS P2 TSL 5 BASIC19.67■□□□□ 0.74
Limch1Q3UH68 C230012O17Rik-201ENSMUST00000130085 2999 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Limch1Q3UH68 Hand1-201ENSMUST00000036917 1904 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Limch1Q3UH68 Hyls1-201ENSMUST00000115110 1973 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Limch1Q3UH68 Homez-202ENSMUST00000142283 4713 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Limch1Q3UH68 Gm26526-201ENSMUST00000181075 2927 ntTSL 5 BASIC19.66■□□□□ 0.74
Limch1Q3UH68 Ube2d3-202ENSMUST00000166033 2504 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
Limch1Q3UH68 Gnb1-202ENSMUST00000105616 3088 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Limch1Q3UH68 Lrch3-203ENSMUST00000135193 2794 ntAPPRIS ALT2 TSL 5 BASIC19.66■□□□□ 0.74
Limch1Q3UH68 Gm22697-201ENSMUST00000175194 63 ntBASIC19.66■□□□□ 0.74
Limch1Q3UH68 Stk11-210ENSMUST00000213772 1239 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
Limch1Q3UH68 D230030E09Rik-201ENSMUST00000222459 884 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Limch1Q3UH68 AC107711.5-202ENSMUST00000226429 702 ntBASIC19.66■□□□□ 0.74
Limch1Q3UH68 Gng11-201ENSMUST00000031670 919 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Limch1Q3UH68 Rpl39l-201ENSMUST00000044103 805 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Limch1Q3UH68 Grwd1-201ENSMUST00000107723 1898 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Limch1Q3UH68 Lrrtm1-202ENSMUST00000159616 2541 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Limch1Q3UH68 Dag1-201ENSMUST00000080435 4364 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Limch1Q3UH68 Tm9sf2-203ENSMUST00000171318 1494 ntTSL 5 BASIC19.66■□□□□ 0.74
Limch1Q3UH68 Gpaa1-201ENSMUST00000023221 2107 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Limch1Q3UH68 Cmtm4-201ENSMUST00000179802 7734 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Limch1Q3UH68 Sema6c-214ENSMUST00000202315 2843 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
Limch1Q3UH68 Pdlim5-211ENSMUST00000198381 1555 ntAPPRIS ALT2 TSL 5 BASIC19.66■□□□□ 0.74
Limch1Q3UH68 Kcnk4-201ENSMUST00000025908 1715 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Limch1Q3UH68 Zbtb9-201ENSMUST00000120016 2798 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Limch1Q3UH68 Fez2-202ENSMUST00000112487 2020 ntAPPRIS ALT1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Limch1Q3UH68 Mdm1-204ENSMUST00000169817 2022 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
Limch1Q3UH68 Gapdh-202ENSMUST00000117757 1273 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Limch1Q3UH68 Gm14114-201ENSMUST00000139345 287 ntTSL 3 BASIC19.65■□□□□ 0.74
Limch1Q3UH68 Gm2431-201ENSMUST00000171531 519 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
Limch1Q3UH68 Stx3-208ENSMUST00000211641 1018 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Limch1Q3UH68 Grcc10-201ENSMUST00000004389 863 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Limch1Q3UH68 Tbpl1-201ENSMUST00000095794 1195 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Limch1Q3UH68 Bdkrb1-202ENSMUST00000182899 1313 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
Limch1Q3UH68 Bdkrb1-201ENSMUST00000041229 1338 ntAPPRIS P1 BASIC19.65■□□□□ 0.74
Limch1Q3UH68 Acvr1c-204ENSMUST00000112608 1497 ntAPPRIS ALT2 TSL 5 BASIC19.65■□□□□ 0.74
Limch1Q3UH68 1700066B19Rik-201ENSMUST00000097617 2504 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Limch1Q3UH68 Gtpbp3-208ENSMUST00000168847 2803 ntAPPRIS ALT2 TSL 5 BASIC19.65■□□□□ 0.74
Limch1Q3UH68 Psen2-205ENSMUST00000111108 1997 ntAPPRIS P2 TSL 1 (best) BASIC19.64■□□□□ 0.74
Limch1Q3UH68 Dclk2-208ENSMUST00000194452 2066 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
Limch1Q3UH68 Lrrc36-206ENSMUST00000216765 2301 ntAPPRIS ALT2 TSL 5 BASIC19.64■□□□□ 0.74
Limch1Q3UH68 Large2-215ENSMUST00000176810 2477 ntAPPRIS ALT2 TSL 5 BASIC19.64■□□□□ 0.74
Limch1Q3UH68 Relt-201ENSMUST00000008462 2851 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Limch1Q3UH68 Fcho1-209ENSMUST00000146100 3188 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Limch1Q3UH68 Hist1h2bf-201ENSMUST00000105106 461 ntAPPRIS P1 BASIC19.64■□□□□ 0.73
Limch1Q3UH68 Mafg-202ENSMUST00000106180 732 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
Limch1Q3UH68 Mafg-204ENSMUST00000106182 1104 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
Limch1Q3UH68 Cutc-202ENSMUST00000112047 1233 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Limch1Q3UH68 Nmnat3-203ENSMUST00000112938 848 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
Limch1Q3UH68 Gtf3a-204ENSMUST00000146511 1298 ntAPPRIS P5 TSL 1 (best) BASIC19.64■□□□□ 0.73
Limch1Q3UH68 Gm28876-201ENSMUST00000188137 703 ntTSL 3 BASIC19.64■□□□□ 0.73
Limch1Q3UH68 Gm45442-201ENSMUST00000210038 411 ntTSL 3 BASIC19.64■□□□□ 0.73
Limch1Q3UH68 Gm4316-202ENSMUST00000212490 1115 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
Limch1Q3UH68 Tmem205-201ENSMUST00000046831 785 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Limch1Q3UH68 Gm8994-201ENSMUST00000077886 1236 ntAPPRIS P1 BASIC19.64■□□□□ 0.73
Limch1Q3UH68 Esyt2-205ENSMUST00000220816 4287 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Limch1Q3UH68 Prss53-202ENSMUST00000205300 1662 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
Limch1Q3UH68 Cxcl12-202ENSMUST00000112866 1878 ntAPPRIS ALT1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Limch1Q3UH68 Zfp648-201ENSMUST00000086195 1892 ntAPPRIS P1 TSL 3 BASIC19.64■□□□□ 0.73
Limch1Q3UH68 Gm36858-201ENSMUST00000194501 2391 ntBASIC19.64■□□□□ 0.73
Limch1Q3UH68 Pid1-201ENSMUST00000168574 2664 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Limch1Q3UH68 Smim10l1-201ENSMUST00000100864 2842 ntAPPRIS P1 BASIC19.64■□□□□ 0.73
Limch1Q3UH68 Cnot9-201ENSMUST00000087215 3268 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Limch1Q3UH68 B4galnt4-201ENSMUST00000048002 3556 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Limch1Q3UH68 Arhgef9-216ENSMUST00000197206 2227 ntTSL 5 BASIC19.63■□□□□ 0.73
Limch1Q3UH68 Gpr20-201ENSMUST00000064166 2144 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Limch1Q3UH68 Plekhf1-201ENSMUST00000098513 5263 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Limch1Q3UH68 Lce1j-201ENSMUST00000107304 420 ntAPPRIS P1 BASIC19.63■□□□□ 0.73
Limch1Q3UH68 Snx15-207ENSMUST00000154601 767 ntTSL 5 BASIC19.63■□□□□ 0.73
Limch1Q3UH68 Bcl7c-205ENSMUST00000205977 891 ntTSL 2 BASIC19.63■□□□□ 0.73
Limch1Q3UH68 Gm26596-201ENSMUST00000180464 2655 ntBASIC19.63■□□□□ 0.73
Limch1Q3UH68 Kdelr2-201ENSMUST00000110731 1829 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Limch1Q3UH68 Disc1-208ENSMUST00000122389 1694 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
Limch1Q3UH68 Coro1a-201ENSMUST00000032949 1660 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Limch1Q3UH68 Adnp-202ENSMUST00000088001 4932 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Limch1Q3UH68 Plac9a-201ENSMUST00000052286 1555 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Limch1Q3UH68 Rab37-202ENSMUST00000067754 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
Limch1Q3UH68 Map4k5-201ENSMUST00000049239 4452 ntAPPRIS ALT1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Limch1Q3UH68 Gtf3a-201ENSMUST00000132102 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
Limch1Q3UH68 Ttc6-203ENSMUST00000172939 5782 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
Limch1Q3UH68 Dscc1-201ENSMUST00000023059 1324 ntAPPRIS P2 TSL 1 (best) BASIC19.62■□□□□ 0.73
Limch1Q3UH68 Hist1h2bj-201ENSMUST00000110452 463 ntAPPRIS P1 BASIC19.62■□□□□ 0.73
Limch1Q3UH68 Hist1h2bp-202ENSMUST00000110473 621 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
Limch1Q3UH68 Mdfi-203ENSMUST00000113280 1281 ntTSL 5 BASIC19.62■□□□□ 0.73
Retrieved 100 of 76,532 protein–RNA pairs in 41.8 ms