Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 Pomp-201ENSMUST00000031654 1579 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Nkx3-1P97436 Naa10-204ENSMUST00000114389 1031 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
Nkx3-1P97436 Gm12963-201ENSMUST00000131846 783 ntTSL 5 BASIC14.44□□□□□ -0.1
Nkx3-1P97436 Gm26871-202ENSMUST00000180774 695 ntTSL 2 BASIC14.44□□□□□ -0.1
Nkx3-1P97436 Gm26644-201ENSMUST00000181365 958 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Nkx3-1P97436 Gm27459-201ENSMUST00000184860 107 ntBASIC14.44□□□□□ -0.1
Nkx3-1P97436 Rpl19-ps10-201ENSMUST00000205555 330 ntBASIC14.44□□□□□ -0.1
Nkx3-1P97436 Ankrd40-201ENSMUST00000021227 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
Nkx3-1P97436 Prm2-201ENSMUST00000037996 621 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Nkx3-1P97436 Rad51d-203ENSMUST00000092844 1228 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Nkx3-1P97436 Serf2-201ENSMUST00000099475 525 ntTSL 2 BASIC14.44□□□□□ -0.1
Nkx3-1P97436 Htr5b-201ENSMUST00000055884 1935 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Nkx3-1P97436 Fst-201ENSMUST00000022287 2556 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Nkx3-1P97436 Tsnax-202ENSMUST00000212603 2169 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Nkx3-1P97436 Arhgef17-204ENSMUST00000209041 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
Nkx3-1P97436 Tmed4-201ENSMUST00000004508 2003 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Nkx3-1P97436 Gm26892-201ENSMUST00000181695 1636 ntTSL 5 BASIC14.44□□□□□ -0.1
Nkx3-1P97436 Rbm11-202ENSMUST00000114249 2750 ntAPPRIS ALT2 TSL 5 BASIC14.44□□□□□ -0.1
Nkx3-1P97436 Baz1a-205ENSMUST00000173433 5788 ntAPPRIS P2 TSL 5 BASIC14.43□□□□□ -0.1
Nkx3-1P97436 Ccdc91-201ENSMUST00000032441 2459 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Nkx3-1P97436 Rnaseh2a-202ENSMUST00000109736 2981 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
Nkx3-1P97436 Pcolce-202ENSMUST00000054564 1585 ntAPPRIS ALT2 TSL 5 BASIC14.43□□□□□ -0.1
Nkx3-1P97436 Nr1h2-204ENSMUST00000107912 1839 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
Nkx3-1P97436 Ppp1r3f-205ENSMUST00000150787 4760 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
Nkx3-1P97436 Kdm1a-202ENSMUST00000105847 3028 ntAPPRIS ALT2 TSL 5 BASIC14.43□□□□□ -0.1
Nkx3-1P97436 Tmem151b-201ENSMUST00000180252 4851 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Nkx3-1P97436 Usp13-202ENSMUST00000108228 2767 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
Nkx3-1P97436 Arfip2-202ENSMUST00000084782 2254 ntAPPRIS P2 TSL 5 BASIC14.43□□□□□ -0.1
Nkx3-1P97436 Por-201ENSMUST00000005651 2636 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Nkx3-1P97436 Tsacc-202ENSMUST00000107556 584 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Nkx3-1P97436 Kxd1-202ENSMUST00000117580 696 ntTSL 5 BASIC14.43□□□□□ -0.1
Nkx3-1P97436 Gm28402-201ENSMUST00000188574 373 ntTSL 3 BASIC14.43□□□□□ -0.1
Nkx3-1P97436 Gm43347-201ENSMUST00000200226 580 ntBASIC14.43□□□□□ -0.1
Nkx3-1P97436 Gm5864-201ENSMUST00000202263 970 ntBASIC14.43□□□□□ -0.1
Nkx3-1P97436 AC164629.2-201ENSMUST00000217916 270 ntBASIC14.43□□□□□ -0.1
Nkx3-1P97436 AC125350.1-201ENSMUST00000225115 903 ntBASIC14.43□□□□□ -0.1
Nkx3-1P97436 Znfx1-201ENSMUST00000048988 7218 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Nkx3-1P97436 Idnk-201ENSMUST00000051490 764 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Nkx3-1P97436 Gm6190-201ENSMUST00000220683 1374 ntBASIC14.43□□□□□ -0.1
Nkx3-1P97436 Kcnk10-203ENSMUST00000221305 1357 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Nkx3-1P97436 Wnt10b-204ENSMUST00000226655 1807 ntBASIC14.43□□□□□ -0.1
Nkx3-1P97436 Dexi-203ENSMUST00000184863 2537 ntAPPRIS P1 TSL 2 BASIC14.43□□□□□ -0.1
Nkx3-1P97436 Deaf1-209ENSMUST00000211537 2882 ntTSL 2 BASIC14.43□□□□□ -0.1
Nkx3-1P97436 Rprd1b-207ENSMUST00000152452 1910 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Nkx3-1P97436 Prss12-201ENSMUST00000029603 2602 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Nkx3-1P97436 Sfrp2-201ENSMUST00000029625 2003 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Nkx3-1P97436 Bfsp2-201ENSMUST00000124310 1662 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Nkx3-1P97436 Lysmd4-209ENSMUST00000208998 2110 ntAPPRIS P2 TSL 1 (best) BASIC14.42□□□□□ -0.1
Nkx3-1P97436 Sh3glb1-205ENSMUST00000199854 1416 ntTSL 5 BASIC14.42□□□□□ -0.1
Nkx3-1P97436 Apaf1-208ENSMUST00000162618 5151 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
Nkx3-1P97436 Vrk2-201ENSMUST00000078362 1889 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Nkx3-1P97436 Ttc14-203ENSMUST00000117915 4913 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
Nkx3-1P97436 Map1lc3b-204ENSMUST00000181826 2633 ntBASIC14.42□□□□□ -0.1
Nkx3-1P97436 Edf1-201ENSMUST00000015236 722 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Nkx3-1P97436 Hrh3-204ENSMUST00000165248 1224 ntAPPRIS ALT2 TSL 5 BASIC14.42□□□□□ -0.1
Nkx3-1P97436 Gm40457-201ENSMUST00000205319 1174 ntTSL 5 BASIC14.42□□□□□ -0.1
Nkx3-1P97436 Pgpep1-208ENSMUST00000211715 676 ntTSL 3 BASIC14.42□□□□□ -0.1
Nkx3-1P97436 AC153889.1-201ENSMUST00000219257 330 ntBASIC14.42□□□□□ -0.1
Nkx3-1P97436 Hist1h1a-201ENSMUST00000055770 741 ntAPPRIS P1 BASIC14.42□□□□□ -0.1
Nkx3-1P97436 Gnb2-203ENSMUST00000111023 1471 ntTSL 5 BASIC14.42□□□□□ -0.1
Nkx3-1P97436 Gm9917-202ENSMUST00000181099 1499 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
Nkx3-1P97436 Trim14-202ENSMUST00000102924 1582 ntTSL 2 BASIC14.42□□□□□ -0.1
Nkx3-1P97436 Rnls-201ENSMUST00000096114 1597 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Nkx3-1P97436 Prdm6-203ENSMUST00000115399 2227 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
Nkx3-1P97436 Hikeshi-206ENSMUST00000153470 2224 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Nkx3-1P97436 Nucb2-201ENSMUST00000032895 1685 ntAPPRIS P2 TSL 1 (best) BASIC14.42□□□□□ -0.1
Nkx3-1P97436 Dok5-201ENSMUST00000029075 1768 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Nkx3-1P97436 Pkn1-201ENSMUST00000005616 6662 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
Nkx3-1P97436 Fbxo42-201ENSMUST00000030757 5934 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Nkx3-1P97436 Il17rb-201ENSMUST00000016110 2061 ntAPPRIS P2 TSL 1 (best) BASIC14.42□□□□□ -0.1
Nkx3-1P97436 Tenm3-204ENSMUST00000110346 2267 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Nkx3-1P97436 Asb1-202ENSMUST00000086843 2490 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Nkx3-1P97436 Gnb1-202ENSMUST00000105616 3088 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Nkx3-1P97436 Mtif3-201ENSMUST00000016654 2131 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Nkx3-1P97436 Ing1-207ENSMUST00000211007 2241 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Nkx3-1P97436 Dnaaf5-203ENSMUST00000196441 2426 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Nkx3-1P97436 Rnf181-203ENSMUST00000114095 869 ntTSL 3 BASIC14.41□□□□□ -0.1
Nkx3-1P97436 Mrps18a-201ENSMUST00000024763 884 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Nkx3-1P97436 Angptl8-201ENSMUST00000058777 865 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Nkx3-1P97436 Gm9991-201ENSMUST00000070048 1207 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Nkx3-1P97436 Acaa1a-201ENSMUST00000039784 1762 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Nkx3-1P97436 Dut-201ENSMUST00000051605 1950 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Nkx3-1P97436 Itgb5-202ENSMUST00000115028 3090 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Nkx3-1P97436 Rab6b-201ENSMUST00000035155 5007 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Nkx3-1P97436 Gm17055-201ENSMUST00000166951 2232 ntTSL 5 BASIC14.41□□□□□ -0.1
Nkx3-1P97436 Rilpl1-201ENSMUST00000062153 2249 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Nkx3-1P97436 Evc-202ENSMUST00000114148 2119 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
Nkx3-1P97436 Hdhd2-202ENSMUST00000097521 1716 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Nkx3-1P97436 Fam46c-201ENSMUST00000061455 5640 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Nkx3-1P97436 Grk2-202ENSMUST00000088737 3376 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Nkx3-1P97436 Donson-201ENSMUST00000023682 2360 ntAPPRIS P2 TSL 1 (best) BASIC14.4□□□□□ -0.1
Nkx3-1P97436 Insm1-201ENSMUST00000089257 3100 ntAPPRIS P1 BASIC14.4□□□□□ -0.1
Nkx3-1P97436 Col15a1-201ENSMUST00000082303 5102 ntAPPRIS ALT2 TSL 2 BASIC14.4□□□□□ -0.1
Nkx3-1P97436 Ltbp4-202ENSMUST00000108369 5377 ntAPPRIS ALT2 TSL 5 BASIC14.4□□□□□ -0.1
Nkx3-1P97436 Alcam-201ENSMUST00000023312 6036 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Nkx3-1P97436 Gm8909-201ENSMUST00000040467 1357 ntAPPRIS P2 TSL 1 (best) BASIC14.4□□□□□ -0.1
Nkx3-1P97436 Pafah1b3-207ENSMUST00000155118 679 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Nkx3-1P97436 Polr2m-202ENSMUST00000163972 2138 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Nkx3-1P97436 Mir8098-201ENSMUST00000184011 137 ntBASIC14.4□□□□□ -0.1
Nkx3-1P97436 Shisa5-218ENSMUST00000200515 1005 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Retrieved 100 of 76,532 protein–RNA pairs in 23.7 ms