Protein–RNA interactions for Protein: P50431

Shmt1, Serine hydroxymethyltransferase, cytosolic, mousemouse

Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shmt1P50431 Nkpd1-201ENSMUST00000078908 2753 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
Shmt1P50431 Mfhas1-201ENSMUST00000037666 6408 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Shmt1P50431 Irak1-205ENSMUST00000114353 1896 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
Shmt1P50431 F830208F22Rik-202ENSMUST00000143732 2891 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Shmt1P50431 Tmtc4-209ENSMUST00000148661 2719 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Shmt1P50431 Erlin1-201ENSMUST00000071698 3228 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
Shmt1P50431 4930474H06Rik-201ENSMUST00000132822 1590 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Shmt1P50431 Epn1-202ENSMUST00000098845 2565 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Shmt1P50431 Notch4-201ENSMUST00000015612 6591 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Shmt1P50431 Efnb2-201ENSMUST00000001319 4793 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Shmt1P50431 Klc1-202ENSMUST00000118471 2272 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Shmt1P50431 Nsmf-203ENSMUST00000100334 2957 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Shmt1P50431 Gm13524-201ENSMUST00000125869 662 ntTSL 3 BASIC17.67■□□□□ 0.42
Shmt1P50431 Gm12781-201ENSMUST00000146269 395 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Shmt1P50431 Fbxo6-208ENSMUST00000168503 1240 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
Shmt1P50431 Gm6623-201ENSMUST00000173570 544 ntBASIC17.67■□□□□ 0.42
Shmt1P50431 Pyy-201ENSMUST00000017455 555 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
Shmt1P50431 Bvht-202ENSMUST00000183087 588 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Shmt1P50431 4933412L11Rik-201ENSMUST00000203702 1044 ntBASIC17.67■□□□□ 0.42
Shmt1P50431 Gm44973-201ENSMUST00000207050 1003 ntAPPRIS P1 TSL 3 BASIC17.67■□□□□ 0.42
Shmt1P50431 Mrpl36-203ENSMUST00000222030 680 ntAPPRIS P1 TSL 3 BASIC17.67■□□□□ 0.42
Shmt1P50431 Imp3-201ENSMUST00000034827 924 ntAPPRIS P1 BASIC17.67■□□□□ 0.42
Shmt1P50431 Exosc5-201ENSMUST00000079634 1020 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Shmt1P50431 Atp6v1b2-201ENSMUST00000006435 2825 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Shmt1P50431 Uhmk1-202ENSMUST00000123399 7775 ntTSL 5 BASIC17.67■□□□□ 0.42
Shmt1P50431 Pcnx-204ENSMUST00000221721 8318 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
Shmt1P50431 Il17re-203ENSMUST00000101065 1973 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Shmt1P50431 Madcam1-201ENSMUST00000020554 1436 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Shmt1P50431 Tmem254b-201ENSMUST00000022418 1447 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Shmt1P50431 Ptpre-201ENSMUST00000073961 5410 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
Shmt1P50431 Gm26892-201ENSMUST00000181695 1636 ntTSL 5 BASIC17.66■□□□□ 0.42
Shmt1P50431 Eif2b5-201ENSMUST00000003320 3186 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Shmt1P50431 Ttc13-201ENSMUST00000041614 3038 ntTSL 2 BASIC17.66■□□□□ 0.42
Shmt1P50431 Gm11950-201ENSMUST00000121615 838 ntBASIC17.66■□□□□ 0.42
Shmt1P50431 Snx15-207ENSMUST00000154601 767 ntTSL 5 BASIC17.66■□□□□ 0.42
Shmt1P50431 Snhg4-201ENSMUST00000181664 1190 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Shmt1P50431 Ank2-226ENSMUST00000189368 339 ntBASIC17.66■□□□□ 0.42
Shmt1P50431 Gm18421-201ENSMUST00000204122 625 ntBASIC17.66■□□□□ 0.42
Shmt1P50431 1700022H01Rik-201ENSMUST00000219142 387 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Shmt1P50431 Rad51d-203ENSMUST00000092844 1228 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Shmt1P50431 Prss8-201ENSMUST00000032988 1852 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Shmt1P50431 Gm16401-202ENSMUST00000197463 2074 ntBASIC17.66■□□□□ 0.42
Shmt1P50431 Myo16-204ENSMUST00000208309 2462 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Shmt1P50431 Tmem163-203ENSMUST00000160616 2657 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
Shmt1P50431 Klhdc8a-201ENSMUST00000046071 4269 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Shmt1P50431 Matn4-201ENSMUST00000103103 2304 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Shmt1P50431 Prkcg-202ENSMUST00000172109 2119 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Shmt1P50431 Secisbp2-202ENSMUST00000110044 1915 ntTSL 2 BASIC17.66■□□□□ 0.42
Shmt1P50431 Zkscan4-202ENSMUST00000225845 1506 ntBASIC17.66■□□□□ 0.42
Shmt1P50431 Dscc1-201ENSMUST00000023059 1324 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Shmt1P50431 Cpox-201ENSMUST00000060077 3186 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Shmt1P50431 Dmap1-201ENSMUST00000102687 1566 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Shmt1P50431 Cdk9-202ENSMUST00000120105 1565 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Shmt1P50431 Eif4a2-201ENSMUST00000023599 2208 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
Shmt1P50431 Eefsec-201ENSMUST00000165242 2679 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Shmt1P50431 Fam171a2-201ENSMUST00000049057 3118 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Shmt1P50431 Col13a1-204ENSMUST00000105453 2935 ntTSL 2 BASIC17.65■□□□□ 0.42
Shmt1P50431 Trim54-202ENSMUST00000202769 1408 ntAPPRIS ALT1 TSL 5 BASIC17.65■□□□□ 0.42
Shmt1P50431 Hoxc4-202ENSMUST00000165375 2121 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Shmt1P50431 Ewsr1-203ENSMUST00000079949 2588 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
Shmt1P50431 Bnip2-203ENSMUST00000117450 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Shmt1P50431 Nrl-202ENSMUST00000111404 2422 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Shmt1P50431 Gm7284-201ENSMUST00000131667 944 ntBASIC17.65■□□□□ 0.42
Shmt1P50431 Znhit2-201ENSMUST00000162726 1281 ntAPPRIS P1 BASIC17.65■□□□□ 0.42
Shmt1P50431 Mrps12-204ENSMUST00000171183 883 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
Shmt1P50431 Flg-207ENSMUST00000180293 768 ntAPPRIS ALT2 BASIC17.65■□□□□ 0.42
Shmt1P50431 Gm28402-201ENSMUST00000188574 373 ntTSL 3 BASIC17.65■□□□□ 0.42
Shmt1P50431 Gm19935-201ENSMUST00000209208 979 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Shmt1P50431 Insl3-201ENSMUST00000034261 623 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Shmt1P50431 Psen2-205ENSMUST00000111108 1997 ntAPPRIS P2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Shmt1P50431 Cacng6-202ENSMUST00000183200 1977 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Shmt1P50431 Chpt1-201ENSMUST00000020253 3898 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
Shmt1P50431 Taf6l-213ENSMUST00000189739 1794 ntTSL 5 BASIC17.65■□□□□ 0.42
Shmt1P50431 Mink1-201ENSMUST00000072237 4994 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
Shmt1P50431 Klf14-201ENSMUST00000101589 3056 ntAPPRIS P1 BASIC17.65■□□□□ 0.42
Shmt1P50431 Nfib-204ENSMUST00000107246 3075 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Shmt1P50431 Tarbp1-201ENSMUST00000170518 6383 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
Shmt1P50431 Zbtb22-201ENSMUST00000053429 2611 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Shmt1P50431 Gprin1-202ENSMUST00000135343 4248 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Shmt1P50431 Grip1-201ENSMUST00000041962 5343 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
Shmt1P50431 4933427J07Rik-201ENSMUST00000156275 1533 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Shmt1P50431 Gpr161-202ENSMUST00000178700 1827 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
Shmt1P50431 Fgf8-205ENSMUST00000111927 843 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
Shmt1P50431 Gm12359-202ENSMUST00000141696 713 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Shmt1P50431 Gm12359-203ENSMUST00000153181 680 ntTSL 3 BASIC17.64■□□□□ 0.41
Shmt1P50431 Cd70-201ENSMUST00000019633 842 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Shmt1P50431 Rpl13a-204ENSMUST00000209711 495 ntTSL 3 BASIC17.64■□□□□ 0.41
Shmt1P50431 AC107711.5-202ENSMUST00000226429 702 ntBASIC17.64■□□□□ 0.41
Shmt1P50431 Stradb-201ENSMUST00000027185 2960 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Shmt1P50431 Dph1-201ENSMUST00000044949 2139 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Shmt1P50431 Gm26568-201ENSMUST00000180496 1594 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Shmt1P50431 Zfp264-201ENSMUST00000208656 1563 ntBASIC17.64■□□□□ 0.41
Shmt1P50431 Lrrfip1-212ENSMUST00000189617 2155 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
Shmt1P50431 Nek9-201ENSMUST00000040992 5386 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Shmt1P50431 Lhx6-205ENSMUST00000112967 3378 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Shmt1P50431 Bean1-204ENSMUST00000171018 3386 ntAPPRIS P4 TSL 1 (best) BASIC17.64■□□□□ 0.41
Shmt1P50431 Drd2-201ENSMUST00000075764 2547 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Shmt1P50431 Rcc1-201ENSMUST00000030726 2278 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Shmt1P50431 Pex6-201ENSMUST00000002840 3200 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Shmt1P50431 Idh1-201ENSMUST00000097709 2302 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Retrieved 100 of 76,532 protein–RNA pairs in 28.7 ms