Protein–RNA interactions for Protein: P18828

Sdc1, Syndecan-1, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc1P18828 Pmpca-201ENSMUST00000076431 3135 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Sdc1P18828 Stx6-201ENSMUST00000027743 4589 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Sdc1P18828 Trappc10-201ENSMUST00000000384 5047 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Sdc1P18828 Agap1-202ENSMUST00000074945 10069 ntTSL 5 BASIC13.8□□□□□ -0.2
Sdc1P18828 Gm13063-201ENSMUST00000132247 669 ntTSL 3 BASIC13.8□□□□□ -0.2
Sdc1P18828 Zfp428-203ENSMUST00000177205 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
Sdc1P18828 Gon7-202ENSMUST00000179263 525 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Sdc1P18828 0610039K10Rik-202ENSMUST00000184724 952 ntBASIC13.8□□□□□ -0.2
Sdc1P18828 AC142113.1-201ENSMUST00000214931 801 ntTSL 5 BASIC13.8□□□□□ -0.2
Sdc1P18828 Fars2-201ENSMUST00000021857 2125 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Sdc1P18828 Zfp428-201ENSMUST00000071361 1182 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
Sdc1P18828 Gm44616-201ENSMUST00000206417 1732 ntBASIC13.8□□□□□ -0.2
Sdc1P18828 Acsl3-201ENSMUST00000035779 3950 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Sdc1P18828 Podn-203ENSMUST00000106709 3170 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Sdc1P18828 Myb-203ENSMUST00000188495 3693 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
Sdc1P18828 Vangl2-203ENSMUST00000111264 2349 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Sdc1P18828 Spdya-204ENSMUST00000167641 1891 ntAPPRIS P1 TSL 5 BASIC13.8□□□□□ -0.2
Sdc1P18828 Gk5-201ENSMUST00000085217 2815 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
Sdc1P18828 H2-Q7-201ENSMUST00000071951 1406 ntAPPRIS P2 TSL 1 (best) BASIC13.8□□□□□ -0.2
Sdc1P18828 H2-Q7-203ENSMUST00000078205 1419 ntTSL 5 BASIC13.8□□□□□ -0.2
Sdc1P18828 Mphosph8-201ENSMUST00000116468 2939 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Sdc1P18828 Pcdha2-201ENSMUST00000115662 5361 ntAPPRIS P2 TSL 1 (best) BASIC13.8□□□□□ -0.2
Sdc1P18828 AC108858.1-201ENSMUST00000228461 1498 ntBASIC13.8□□□□□ -0.2
Sdc1P18828 Ttpal-202ENSMUST00000109408 1999 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Sdc1P18828 Cry1-201ENSMUST00000020227 3026 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Sdc1P18828 Prob1-201ENSMUST00000097619 3021 ntBASIC13.8□□□□□ -0.2
Sdc1P18828 Pde4a-201ENSMUST00000003395 2524 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Sdc1P18828 Gm37820-201ENSMUST00000194021 2147 ntBASIC13.79□□□□□ -0.2
Sdc1P18828 Rbm15-201ENSMUST00000061772 4343 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Sdc1P18828 Klc3-202ENSMUST00000108457 1632 ntAPPRIS P1 TSL 5 BASIC13.79□□□□□ -0.2
Sdc1P18828 Sbk2-202ENSMUST00000182214 2236 ntAPPRIS P1 TSL 5 BASIC13.79□□□□□ -0.2
Sdc1P18828 Hectd3-201ENSMUST00000050067 4583 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Sdc1P18828 Rmdn1-201ENSMUST00000029888 1734 ntAPPRIS P2 TSL 1 (best) BASIC13.79□□□□□ -0.2
Sdc1P18828 Gm45723-201ENSMUST00000212135 1783 ntTSL 5 BASIC13.79□□□□□ -0.2
Sdc1P18828 Errfi1-201ENSMUST00000030811 3043 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Sdc1P18828 Rps2-ps10-202ENSMUST00000170335 965 ntBASIC13.79□□□□□ -0.2
Sdc1P18828 Lmo1-201ENSMUST00000036992 1282 ntAPPRIS P3 TSL 1 (best) BASIC13.79□□□□□ -0.2
Sdc1P18828 Mesp2-201ENSMUST00000107394 1944 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Sdc1P18828 Rcn2-201ENSMUST00000114276 2024 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Sdc1P18828 Klhdc4-201ENSMUST00000045884 2078 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Sdc1P18828 Dleu2-203ENSMUST00000182259 1437 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
Sdc1P18828 Skor1-202ENSMUST00000116613 3591 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
Sdc1P18828 B3gnt5-202ENSMUST00000119468 2229 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Sdc1P18828 Runx2-213ENSMUST00000162878 2987 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
Sdc1P18828 Rnf138-202ENSMUST00000072847 3002 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
Sdc1P18828 Zscan2-201ENSMUST00000044115 2310 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Sdc1P18828 Fhl1-201ENSMUST00000023854 2356 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
Sdc1P18828 Cdc42ep1-201ENSMUST00000059619 2542 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Sdc1P18828 Phactr2-203ENSMUST00000105545 8556 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
Sdc1P18828 Rnf170-209ENSMUST00000209300 1881 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
Sdc1P18828 Rusc1-203ENSMUST00000166687 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
Sdc1P18828 Clk4-201ENSMUST00000093132 1949 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Sdc1P18828 Bin2-207ENSMUST00000183211 2036 ntAPPRIS P1 TSL 5 BASIC13.78□□□□□ -0.2
Sdc1P18828 Usp53-201ENSMUST00000090379 6185 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Sdc1P18828 Nodal-201ENSMUST00000049339 2095 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Sdc1P18828 Otud4-202ENSMUST00000173078 7354 ntAPPRIS P4 TSL 1 (best) BASIC13.78□□□□□ -0.2
Sdc1P18828 Hip1r-201ENSMUST00000000939 6735 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Sdc1P18828 Jagn1-201ENSMUST00000101070 1201 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Sdc1P18828 Ppp1r12b-203ENSMUST00000112163 828 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
Sdc1P18828 Srp19-202ENSMUST00000119329 613 ntTSL 2 BASIC13.78□□□□□ -0.2
Sdc1P18828 Gm13534-201ENSMUST00000121169 513 ntBASIC13.78□□□□□ -0.2
Sdc1P18828 Igfbp7-201ENSMUST00000046746 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
Sdc1P18828 Dtx2-202ENSMUST00000111142 2650 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
Sdc1P18828 Asic1-201ENSMUST00000023758 4114 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Sdc1P18828 Cep44-201ENSMUST00000040330 1690 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Sdc1P18828 Cnot11-203ENSMUST00000161515 3482 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Sdc1P18828 Hpn-209ENSMUST00000168884 1762 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Sdc1P18828 Tpm4-201ENSMUST00000003575 2128 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Sdc1P18828 I0C0044D17Rik-201ENSMUST00000097964 2264 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Sdc1P18828 Elavl3-201ENSMUST00000003501 5014 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Sdc1P18828 Myef2-201ENSMUST00000067780 2999 ntAPPRIS ALT2 TSL 5 BASIC13.77□□□□□ -0.2
Sdc1P18828 C2cd2-201ENSMUST00000170757 6555 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
Sdc1P18828 Pdzd4-201ENSMUST00000002080 3970 ntAPPRIS P3 TSL 1 (best) BASIC13.77□□□□□ -0.2
Sdc1P18828 Sp8-201ENSMUST00000063918 4478 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
Sdc1P18828 Sec14l1-203ENSMUST00000103026 2589 ntAPPRIS ALT2 TSL 5 BASIC13.77□□□□□ -0.21
Sdc1P18828 Cdc27-202ENSMUST00000106961 1863 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
Sdc1P18828 Mmd-202ENSMUST00000107887 1654 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
Sdc1P18828 Nr3c2-204ENSMUST00000109913 5916 ntAPPRIS P2 TSL 5 BASIC13.77□□□□□ -0.21
Sdc1P18828 Hacd1-203ENSMUST00000114753 993 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
Sdc1P18828 Mpc1-208ENSMUST00000155364 958 ntAPPRIS P1 TSL 2 BASIC13.77□□□□□ -0.21
Sdc1P18828 Gm15867-201ENSMUST00000159407 388 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
Sdc1P18828 Gm19721-201ENSMUST00000195284 1764 ntBASIC13.77□□□□□ -0.21
Sdc1P18828 Vegfa-213ENSMUST00000217017 1179 ntAPPRIS P4 TSL 1 (best) BASIC13.77□□□□□ -0.21
Sdc1P18828 Smarcd1-201ENSMUST00000023759 3153 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
Sdc1P18828 Wnt16-201ENSMUST00000031681 1663 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
Sdc1P18828 Ric8b-201ENSMUST00000038523 3069 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
Sdc1P18828 Gpr3-201ENSMUST00000052090 1116 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
Sdc1P18828 Vrk2-201ENSMUST00000078362 1889 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
Sdc1P18828 Srsf11-204ENSMUST00000121326 3106 ntAPPRIS P4 TSL 5 BASIC13.77□□□□□ -0.21
Sdc1P18828 Megf11-210ENSMUST00000164113 6018 ntTSL 5 BASIC13.77□□□□□ -0.21
Sdc1P18828 Flt1-202ENSMUST00000031653 6895 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Sdc1P18828 Rfx5-207ENSMUST00000137088 4333 ntAPPRIS P1 TSL 5 BASIC13.76□□□□□ -0.21
Sdc1P18828 Dffb-201ENSMUST00000030893 2093 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Sdc1P18828 Gm9821-201ENSMUST00000178895 1953 ntAPPRIS P1 BASIC13.76□□□□□ -0.21
Sdc1P18828 Ppp1r37-201ENSMUST00000058444 3816 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Sdc1P18828 Tnfaip2-201ENSMUST00000102745 3762 ntAPPRIS P2 TSL 1 (best) BASIC13.76□□□□□ -0.21
Sdc1P18828 St6galnac2-201ENSMUST00000079545 3643 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Sdc1P18828 Snrnp48-201ENSMUST00000091641 1785 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Sdc1P18828 Camta1-202ENSMUST00000097774 8533 ntAPPRIS ALT2 TSL 5 BASIC13.76□□□□□ -0.21
Sdc1P18828 Rflna-201ENSMUST00000036109 1681 ntAPPRIS P1 TSL 5 BASIC13.76□□□□□ -0.21
Retrieved 100 of 76,532 protein–RNA pairs in 29.4 ms