Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Polr2m-202ENSMUST00000163972 2138 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
Col1a1P11087 Mfsd13a-201ENSMUST00000086969 2278 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Col1a1P11087 Timm29-201ENSMUST00000062125 3170 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Col1a1P11087 Gatc-201ENSMUST00000139167 1797 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Col1a1P11087 Znrf1-205ENSMUST00000172856 4600 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
Col1a1P11087 Gm8097-201ENSMUST00000117903 829 ntBASIC19.54■□□□□ 0.72
Col1a1P11087 Ftl2-ps-201ENSMUST00000118517 552 ntBASIC19.54■□□□□ 0.72
Col1a1P11087 Gnb2-212ENSMUST00000150063 1569 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Col1a1P11087 Gm10505-201ENSMUST00000151398 1587 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
Col1a1P11087 Gm9727-201ENSMUST00000161387 555 ntBASIC19.54■□□□□ 0.72
Col1a1P11087 Gm3336-201ENSMUST00000179347 1149 ntAPPRIS P2 TSL 5 BASIC19.54■□□□□ 0.72
Col1a1P11087 Gm6089-201ENSMUST00000197666 938 ntBASIC19.54■□□□□ 0.72
Col1a1P11087 Gm3336-202ENSMUST00000213065 842 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
Col1a1P11087 Sod1-201ENSMUST00000023707 646 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Col1a1P11087 Pfn3-201ENSMUST00000054146 545 ntAPPRIS P1 BASIC19.54■□□□□ 0.72
Col1a1P11087 Dnajb8-201ENSMUST00000061866 990 ntAPPRIS P1 BASIC19.54■□□□□ 0.72
Col1a1P11087 Gm15590-201ENSMUST00000078419 552 ntBASIC19.54■□□□□ 0.72
Col1a1P11087 Dpep3-201ENSMUST00000034371 1698 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Col1a1P11087 Ralgapa1-204ENSMUST00000219432 6631 ntTSL 5 BASIC19.54■□□□□ 0.72
Col1a1P11087 Neurl4-213ENSMUST00000177476 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
Col1a1P11087 Pou3f3-201ENSMUST00000054883 7409 ntAPPRIS P1 BASIC19.54■□□□□ 0.72
Col1a1P11087 Best2-203ENSMUST00000209421 2212 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Col1a1P11087 Slc38a10-202ENSMUST00000053692 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
Col1a1P11087 Ocel1-202ENSMUST00000110051 2179 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
Col1a1P11087 Agfg2-201ENSMUST00000031736 2893 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.72
Col1a1P11087 Gm17018-201ENSMUST00000047057 1345 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Col1a1P11087 Mras-201ENSMUST00000035045 4701 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Col1a1P11087 Ddx19a-201ENSMUST00000040416 2547 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Col1a1P11087 Kcnip2-209ENSMUST00000162528 2395 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
Col1a1P11087 Larp1b-202ENSMUST00000048490 2354 ntAPPRIS P2 TSL 1 (best) BASIC19.54■□□□□ 0.72
Col1a1P11087 Gm24513-201ENSMUST00000174964 138 ntBASIC19.54■□□□□ 0.72
Col1a1P11087 D030044L04Rik-201ENSMUST00000204220 1291 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
Col1a1P11087 Romo1-201ENSMUST00000088610 569 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Col1a1P11087 Nr1h2-202ENSMUST00000107910 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
Col1a1P11087 Gpr137c-207ENSMUST00000227086 4997 ntAPPRIS ALT2 BASIC19.53■□□□□ 0.72
Col1a1P11087 Ilkap-201ENSMUST00000027534 1368 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Col1a1P11087 Khdrbs2-201ENSMUST00000027226 2281 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Col1a1P11087 Gm37194-201ENSMUST00000193092 3031 ntBASIC19.53■□□□□ 0.72
Col1a1P11087 Zscan12-201ENSMUST00000053293 2270 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Col1a1P11087 Gm13036-201ENSMUST00000117799 748 ntBASIC19.53■□□□□ 0.72
Col1a1P11087 Btf3-204ENSMUST00000134542 780 ntAPPRIS P1 TSL 2 BASIC19.53■□□□□ 0.72
Col1a1P11087 Tmem176a-202ENSMUST00000168406 1086 ntAPPRIS P1 TSL 3 BASIC19.53■□□□□ 0.72
Col1a1P11087 4930445N18Rik-202ENSMUST00000181345 1033 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
Col1a1P11087 Dnmt3a-ps1-201ENSMUST00000192011 1271 ntBASIC19.53■□□□□ 0.72
Col1a1P11087 Tmem270-202ENSMUST00000201316 847 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Col1a1P11087 Gm32050-201ENSMUST00000209793 638 ntTSL 3 BASIC19.53■□□□□ 0.72
Col1a1P11087 AC225888.1-201ENSMUST00000227184 728 ntBASIC19.53■□□□□ 0.72
Col1a1P11087 Tmem270-201ENSMUST00000047305 932 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
Col1a1P11087 Ptn-201ENSMUST00000101534 1614 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Col1a1P11087 AC131586.3-201ENSMUST00000228355 1367 ntBASIC19.53■□□□□ 0.72
Col1a1P11087 Ccdc102a-201ENSMUST00000077955 2304 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Col1a1P11087 Ppp2r1b-211ENSMUST00000176798 2074 ntAPPRIS ALT2 TSL 5 BASIC19.52■□□□□ 0.72
Col1a1P11087 Ankrd61-202ENSMUST00000110717 1498 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.72
Col1a1P11087 Mrpl39-201ENSMUST00000116584 2294 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Col1a1P11087 Stambpl1-201ENSMUST00000054956 2024 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Col1a1P11087 Clcn2-202ENSMUST00000120099 2812 ntAPPRIS ALT2 TSL 5 BASIC19.52■□□□□ 0.72
Col1a1P11087 Prkcg-202ENSMUST00000172109 2119 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
Col1a1P11087 A230072C01Rik-202ENSMUST00000136447 1412 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
Col1a1P11087 Ctnnbip1-201ENSMUST00000030839 2674 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Col1a1P11087 Pdgfa-202ENSMUST00000076095 2060 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Col1a1P11087 Zbtb24-202ENSMUST00000213797 2734 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
Col1a1P11087 Slc16a3-201ENSMUST00000070653 2272 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Col1a1P11087 AC084391.1-201ENSMUST00000200651 141 ntBASIC19.52■□□□□ 0.72
Col1a1P11087 Gnmt-201ENSMUST00000002846 1035 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Col1a1P11087 Epc1-202ENSMUST00000050542 565 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
Col1a1P11087 Lcmt2-201ENSMUST00000099486 2047 ntTSL 1 (best) BASIC19.52■□□□□ 0.71
Col1a1P11087 Nap1l1-201ENSMUST00000065917 1486 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
Col1a1P11087 P2ry1-203ENSMUST00000193943 2203 ntAPPRIS P1 BASIC19.52■□□□□ 0.71
Col1a1P11087 Cct6b-201ENSMUST00000021040 1787 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
Col1a1P11087 Map1lc3b-204ENSMUST00000181826 2633 ntBASIC19.51■□□□□ 0.71
Col1a1P11087 Syncrip-205ENSMUST00000173801 2944 ntAPPRIS ALT1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Col1a1P11087 Fgf22-202ENSMUST00000219228 2167 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Col1a1P11087 Ythdc1-203ENSMUST00000120498 3269 ntAPPRIS ALT2 TSL 5 BASIC19.51■□□□□ 0.71
Col1a1P11087 Ipp-202ENSMUST00000106479 2118 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Col1a1P11087 Siglecf-206ENSMUST00000206299 2149 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
Col1a1P11087 Ipp-201ENSMUST00000030461 2115 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
Col1a1P11087 Gm4459-201ENSMUST00000118750 468 ntBASIC19.51■□□□□ 0.71
Col1a1P11087 Evx1-202ENSMUST00000129243 1034 ntTSL 3 BASIC19.51■□□□□ 0.71
Col1a1P11087 Gm11536-201ENSMUST00000130733 535 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
Col1a1P11087 Ctcflos-201ENSMUST00000142165 469 ntTSL 3 BASIC19.51■□□□□ 0.71
Col1a1P11087 Rbmx-206ENSMUST00000143310 1296 ntTSL 5 BASIC19.51■□□□□ 0.71
Col1a1P11087 5430416N02Rik-202ENSMUST00000181873 626 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
Col1a1P11087 Gm27397-201ENSMUST00000184997 107 ntBASIC19.51■□□□□ 0.71
Col1a1P11087 Gm44123-201ENSMUST00000204662 577 ntTSL 5 BASIC19.51■□□□□ 0.71
Col1a1P11087 Gm45683-201ENSMUST00000210825 1247 ntBASIC19.51■□□□□ 0.71
Col1a1P11087 Gins1-201ENSMUST00000028948 1087 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Col1a1P11087 B4galt3-205ENSMUST00000126699 1758 ntTSL 5 BASIC19.51■□□□□ 0.71
Col1a1P11087 Mapk1ip1-203ENSMUST00000119664 1883 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Col1a1P11087 Hyls1-201ENSMUST00000115110 1973 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Col1a1P11087 Fzd5-202ENSMUST00000116133 2895 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Col1a1P11087 Pea15a-202ENSMUST00000111247 2435 ntTSL 3 BASIC19.51■□□□□ 0.71
Col1a1P11087 Mag-207ENSMUST00000191081 2007 ntAPPRIS ALT1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Col1a1P11087 Mfsd10-202ENSMUST00000114329 1906 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Col1a1P11087 Zcchc2-202ENSMUST00000119166 6368 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
Col1a1P11087 Gm9889-202ENSMUST00000206983 1577 ntBASIC19.5■□□□□ 0.71
Col1a1P11087 Rcor1-201ENSMUST00000084968 5684 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
Col1a1P11087 Gm13830-202ENSMUST00000144202 381 ntTSL 3 BASIC19.5■□□□□ 0.71
Col1a1P11087 Gm8349-201ENSMUST00000182720 1003 ntBASIC19.5■□□□□ 0.71
Col1a1P11087 Slc29a1-222ENSMUST00000171847 2033 ntAPPRIS P3 TSL 1 (best) BASIC19.5■□□□□ 0.71
Col1a1P11087 Camkk2-211ENSMUST00000200109 2751 ntAPPRIS P3 TSL 1 (best) BASIC19.5■□□□□ 0.71
Retrieved 100 of 76,532 protein–RNA pairs in 19.3 ms