Protein–RNA interactions for Protein: P08121

Col3a1, Collagen alpha-1(III) chain, mousemouse

Predictions only

Length 1,464 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col3a1P08121 Gm42456-201ENSMUST00000196840 387 ntTSL 3 BASIC19.92■□□□□ 0.78
Col3a1P08121 4930458A03Rik-201ENSMUST00000198197 961 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
Col3a1P08121 Thoc7-201ENSMUST00000065865 937 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Col3a1P08121 Dupd1-201ENSMUST00000073870 1138 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Col3a1P08121 Neurl4-213ENSMUST00000177476 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
Col3a1P08121 Ncoa5-201ENSMUST00000040381 3179 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Col3a1P08121 2810459M11Rik-202ENSMUST00000165824 3331 ntAPPRIS P3 TSL 1 (best) BASIC19.91■□□□□ 0.78
Col3a1P08121 Atxn7l2-204ENSMUST00000119650 2274 ntTSL 5 BASIC19.91■□□□□ 0.78
Col3a1P08121 4930447C04Rik-202ENSMUST00000110489 1988 ntAPPRIS ALT2 TSL 5 BASIC19.91■□□□□ 0.78
Col3a1P08121 Cacng6-202ENSMUST00000183200 1977 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Col3a1P08121 Tgfb1i1-205ENSMUST00000165667 1812 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
Col3a1P08121 Acvr1b-201ENSMUST00000000544 4413 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Col3a1P08121 Vsig10l-204ENSMUST00000203769 2473 ntAPPRIS P2 TSL 1 (best) BASIC19.91■□□□□ 0.78
Col3a1P08121 Nmt2-203ENSMUST00000102989 2162 ntAPPRIS P1 TSL 5 BASIC19.91■□□□□ 0.78
Col3a1P08121 Gjb3-201ENSMUST00000046532 1880 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Col3a1P08121 Slc9a5-201ENSMUST00000073149 3499 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Col3a1P08121 Mrm2-201ENSMUST00000031536 1443 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Col3a1P08121 Gm13830-205ENSMUST00000201195 1155 ntBASIC19.91■□□□□ 0.78
Col3a1P08121 Gm33054-201ENSMUST00000216588 313 ntTSL 5 BASIC19.91■□□□□ 0.78
Col3a1P08121 Fcnb-201ENSMUST00000028179 1170 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Col3a1P08121 Ptprcap-201ENSMUST00000061086 927 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Col3a1P08121 E330011M16Rik-201ENSMUST00000193614 1794 ntBASIC19.91■□□□□ 0.78
Col3a1P08121 Jak2-202ENSMUST00000065796 5030 ntAPPRIS P1 TSL 5 BASIC19.91■□□□□ 0.78
Col3a1P08121 Sar1a-201ENSMUST00000020285 2613 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Col3a1P08121 Zfp648-201ENSMUST00000086195 1892 ntAPPRIS P1 TSL 3 BASIC19.9■□□□□ 0.78
Col3a1P08121 Amacr-201ENSMUST00000070877 2577 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Col3a1P08121 Ahsa1-201ENSMUST00000021425 1377 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Col3a1P08121 Zfp92-202ENSMUST00000086470 2050 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
Col3a1P08121 Dtnb-222ENSMUST00000174479 3689 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
Col3a1P08121 Hexb-201ENSMUST00000022169 1905 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Col3a1P08121 Adck1-204ENSMUST00000222695 2253 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Col3a1P08121 Alyref-201ENSMUST00000026125 3527 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Col3a1P08121 Kctd9-205ENSMUST00000152243 2528 ntTSL 2 BASIC19.9■□□□□ 0.78
Col3a1P08121 Cmtm5-203ENSMUST00000227441 610 ntBASIC19.9■□□□□ 0.78
Col3a1P08121 Lce3c-201ENSMUST00000055375 567 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Col3a1P08121 Gm2694-204ENSMUST00000181898 1303 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
Col3a1P08121 Gm15635-204ENSMUST00000208024 2539 ntBASIC19.89■□□□□ 0.78
Col3a1P08121 Gm11841-201ENSMUST00000117060 1963 ntBASIC19.89■□□□□ 0.78
Col3a1P08121 Cxcl12-202ENSMUST00000112866 1878 ntAPPRIS ALT1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Col3a1P08121 Mvk-201ENSMUST00000043760 1660 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.77
Col3a1P08121 Bhlhe41-202ENSMUST00000111703 744 ntTSL 3 BASIC19.89■□□□□ 0.77
Col3a1P08121 Bex1-203ENSMUST00000113120 718 ntAPPRIS P1 TSL 3 BASIC19.89■□□□□ 0.77
Col3a1P08121 Ppil3-202ENSMUST00000114345 1175 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
Col3a1P08121 Tnnt2-205ENSMUST00000178204 1172 ntAPPRIS ALT2 TSL 5 BASIC19.89■□□□□ 0.77
Col3a1P08121 Tnnt2-207ENSMUST00000179863 1097 ntAPPRIS P4 TSL 5 BASIC19.89■□□□□ 0.77
Col3a1P08121 Tnnt2-209ENSMUST00000188028 1200 ntAPPRIS P4 TSL 5 BASIC19.89■□□□□ 0.77
Col3a1P08121 Rpl18-204ENSMUST00000209693 535 ntTSL 5 BASIC19.89■□□□□ 0.77
Col3a1P08121 Gm5867-201ENSMUST00000063197 592 ntBASIC19.89■□□□□ 0.77
Col3a1P08121 Rbpms-201ENSMUST00000033994 2375 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
Col3a1P08121 Ext2-212ENSMUST00000184931 2629 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
Col3a1P08121 Perp-201ENSMUST00000019998 1952 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Col3a1P08121 Cyp26b1-203ENSMUST00000204109 1340 ntTSL 5 BASIC19.89■□□□□ 0.77
Col3a1P08121 Fgf4-201ENSMUST00000060336 3030 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Col3a1P08121 Slc26a10-205ENSMUST00000222911 3067 ntAPPRIS ALT2 TSL 5 BASIC19.88■□□□□ 0.77
Col3a1P08121 Sos2-206ENSMUST00000183277 4512 ntAPPRIS ALT2 TSL 5 BASIC19.88■□□□□ 0.77
Col3a1P08121 Bnc2-214ENSMUST00000176612 3963 ntTSL 5 BASIC19.88■□□□□ 0.77
Col3a1P08121 Fam193a-202ENSMUST00000180376 5536 ntAPPRIS P5 TSL 5 BASIC19.88■□□□□ 0.77
Col3a1P08121 Il4i1-202ENSMUST00000118125 2275 ntAPPRIS ALT2 TSL 2 BASIC19.88■□□□□ 0.77
Col3a1P08121 Gm8349-201ENSMUST00000182720 1003 ntBASIC19.88■□□□□ 0.77
Col3a1P08121 Smim22-208ENSMUST00000185147 399 ntAPPRIS ALT2 TSL 2 BASIC19.88■□□□□ 0.77
Col3a1P08121 AW822252-206ENSMUST00000208904 237 ntBASIC19.88■□□□□ 0.77
Col3a1P08121 Icam4-202ENSMUST00000215077 1028 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
Col3a1P08121 Methig1-201ENSMUST00000075675 1029 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Col3a1P08121 Sdf4-203ENSMUST00000105578 1654 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Col3a1P08121 B3gat2-203ENSMUST00000144602 1488 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Col3a1P08121 Osgin2-201ENSMUST00000037198 2658 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Col3a1P08121 Whrn-205ENSMUST00000095038 2665 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Col3a1P08121 Hist1h1c-201ENSMUST00000040914 1560 ntAPPRIS P1 BASIC19.87■□□□□ 0.77
Col3a1P08121 Ccl27a-202ENSMUST00000108032 350 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
Col3a1P08121 Lhx1os-201ENSMUST00000126072 589 ntTSL 3 BASIC19.87■□□□□ 0.77
Col3a1P08121 Dgcr6-208ENSMUST00000153123 920 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
Col3a1P08121 Gm26549-201ENSMUST00000181112 1209 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
Col3a1P08121 Ogfod2-207ENSMUST00000196627 532 ntTSL 3 BASIC19.87■□□□□ 0.77
Col3a1P08121 Coq6-201ENSMUST00000021661 1602 ntAPPRIS P2 TSL 1 (best) BASIC19.87■□□□□ 0.77
Col3a1P08121 Klhdc8b-210ENSMUST00000193895 2718 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
Col3a1P08121 Gm20604-201ENSMUST00000174651 2795 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.77
Col3a1P08121 Tmem233-201ENSMUST00000111997 2477 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.77
Col3a1P08121 Shox2-202ENSMUST00000162060 1537 ntTSL 3 BASIC19.87■□□□□ 0.77
Col3a1P08121 Mmd-201ENSMUST00000004050 2677 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Col3a1P08121 Pitx1-201ENSMUST00000021968 2451 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Col3a1P08121 Cntln-204ENSMUST00000169371 5365 ntAPPRIS ALT2 TSL 5 BASIC19.86■□□□□ 0.77
Col3a1P08121 Gm21887-202ENSMUST00000179760 483 ntAPPRIS ALT2 TSL 5 BASIC19.86■□□□□ 0.77
Col3a1P08121 Msh3-205ENSMUST00000187424 666 ntTSL 2 BASIC19.86■□□□□ 0.77
Col3a1P08121 Kcnn1-207ENSMUST00000212509 1608 ntAPPRIS ALT2 TSL 5 BASIC19.86■□□□□ 0.77
Col3a1P08121 Cfap206-201ENSMUST00000029971 2246 ntAPPRIS P1 TSL 5 BASIC19.86■□□□□ 0.77
Col3a1P08121 Spdef-205ENSMUST00000167489 1708 ntAPPRIS P1 TSL 5 BASIC19.86■□□□□ 0.77
Col3a1P08121 Lrrc36-206ENSMUST00000216765 2301 ntAPPRIS ALT2 TSL 5 BASIC19.86■□□□□ 0.77
Col3a1P08121 Gm7507-201ENSMUST00000183053 1008 ntBASIC19.86■□□□□ 0.77
Col3a1P08121 Gm44264-201ENSMUST00000203049 742 ntTSL 3 BASIC19.86■□□□□ 0.77
Col3a1P08121 AC160338.1-201ENSMUST00000214232 705 ntBASIC19.86■□□□□ 0.77
Col3a1P08121 AC161829.1-201ENSMUST00000220298 281 ntBASIC19.86■□□□□ 0.77
Col3a1P08121 Zfyve21-204ENSMUST00000221375 1265 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
Col3a1P08121 Mtus2-201ENSMUST00000071878 1211 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
Col3a1P08121 Arpc1b-211ENSMUST00000196111 1394 ntAPPRIS ALT1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Col3a1P08121 Mvb12b-201ENSMUST00000041555 4998 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Col3a1P08121 Tmed9-201ENSMUST00000109905 1420 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Col3a1P08121 Lrrfip1-212ENSMUST00000189617 2155 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
Col3a1P08121 Scly-201ENSMUST00000027532 2202 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Col3a1P08121 Bud23-201ENSMUST00000071677 1607 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
Col3a1P08121 Kcnc3-201ENSMUST00000107906 5062 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
Retrieved 100 of 76,532 protein–RNA pairs in 24 ms