Protein–RNA interactions for Protein: O88696

Clpp, ATP-dependent Clp protease proteolytic subunit, mitochondrial, mousemouse

Predictions only

Length 272 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ClppO88696 Dlgap1-209ENSMUST00000140728 2173 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
ClppO88696 Pdk3-201ENSMUST00000045748 2115 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
ClppO88696 Gm15582-201ENSMUST00000132849 1581 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
ClppO88696 Gm26580-201ENSMUST00000181002 2095 ntTSL 5 BASIC16.3■□□□□ 0.2
ClppO88696 Efcab11-201ENSMUST00000046485 2068 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
ClppO88696 Rbfox2-204ENSMUST00000171751 3558 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
ClppO88696 Pfkfb4-203ENSMUST00000198140 3488 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
ClppO88696 Tm6sf2-202ENSMUST00000110160 1446 ntAPPRIS ALT1 TSL 1 (best) BASIC16.29■□□□□ 0.2
ClppO88696 Gm37374-201ENSMUST00000194954 1829 ntBASIC16.29■□□□□ 0.2
ClppO88696 Ndufaf8-201ENSMUST00000106223 781 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
ClppO88696 Echdc2-203ENSMUST00000116307 893 ntTSL 5 BASIC16.29■□□□□ 0.2
ClppO88696 Gm14859-201ENSMUST00000117752 357 ntBASIC16.29■□□□□ 0.2
ClppO88696 Coq7-201ENSMUST00000032887 914 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
ClppO88696 Kcnj4-201ENSMUST00000057801 2148 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
ClppO88696 Myo9b-206ENSMUST00000212935 6316 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
ClppO88696 Hoxb2-201ENSMUST00000100523 1628 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
ClppO88696 Clstn2-201ENSMUST00000035027 4365 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
ClppO88696 Nbea-201ENSMUST00000029374 10986 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
ClppO88696 Shisa2-201ENSMUST00000053949 3119 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
ClppO88696 Larp1-203ENSMUST00000178636 6617 ntAPPRIS P2 TSL 5 BASIC16.29■□□□□ 0.2
ClppO88696 Tjp3-201ENSMUST00000045744 3024 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
ClppO88696 Krt12-201ENSMUST00000017741 1852 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
ClppO88696 Gabbr1-202ENSMUST00000172789 1460 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
ClppO88696 Ctnna2-205ENSMUST00000161846 4018 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
ClppO88696 Slc25a35-202ENSMUST00000102606 1828 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
ClppO88696 Acap3-202ENSMUST00000105584 4365 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
ClppO88696 Pard3-209ENSMUST00000160272 5815 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
ClppO88696 Gm7854-202ENSMUST00000187409 1433 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
ClppO88696 Hpn-209ENSMUST00000168884 1762 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
ClppO88696 F2rl3-201ENSMUST00000058099 1751 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
ClppO88696 2210016F16Rik-201ENSMUST00000022032 3051 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
ClppO88696 Trmt2a-203ENSMUST00000115640 2367 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
ClppO88696 Sema6b-201ENSMUST00000001256 3736 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
ClppO88696 Mettl21a-201ENSMUST00000053469 2666 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
ClppO88696 BC029722-201ENSMUST00000124586 1615 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
ClppO88696 Snx16-201ENSMUST00000029047 2288 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
ClppO88696 Rab3d-202ENSMUST00000119055 694 ntTSL 3 BASIC16.28■□□□□ 0.2
ClppO88696 Gm15545-202ENSMUST00000141011 899 ntTSL 3 BASIC16.28■□□□□ 0.2
ClppO88696 Gm38282-201ENSMUST00000192751 695 ntTSL 5 BASIC16.28■□□□□ 0.2
ClppO88696 Spata33-206ENSMUST00000212637 569 ntAPPRIS ALT2 TSL 2 BASIC16.28■□□□□ 0.2
ClppO88696 Gm7213-201ENSMUST00000215977 950 ntBASIC16.28■□□□□ 0.2
ClppO88696 AC156832.2-201ENSMUST00000216217 1295 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
ClppO88696 Ttll11-202ENSMUST00000112976 3077 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
ClppO88696 Agpat3-203ENSMUST00000105388 3681 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
ClppO88696 Sqor-201ENSMUST00000005953 1804 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
ClppO88696 Cdk5-201ENSMUST00000030814 2059 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
ClppO88696 Chka-201ENSMUST00000025760 2319 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
ClppO88696 Polr3d-201ENSMUST00000000793 2016 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
ClppO88696 Itsn2-201ENSMUST00000062580 5987 ntAPPRIS P2 TSL 5 BASIC16.28■□□□□ 0.2
ClppO88696 Usp21-202ENSMUST00000111305 2278 ntAPPRIS P2 TSL 5 BASIC16.28■□□□□ 0.2
ClppO88696 Sept4-205ENSMUST00000107962 1678 ntAPPRIS ALT1 TSL 5 BASIC16.27■□□□□ 0.2
ClppO88696 Zmynd11-204ENSMUST00000110635 3881 ntTSL 5 BASIC16.27■□□□□ 0.2
ClppO88696 Pcmt1-202ENSMUST00000159917 2491 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.2
ClppO88696 Lrrc47-205ENSMUST00000169622 3468 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
ClppO88696 Rnpc3-203ENSMUST00000106536 1839 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.2
ClppO88696 Tnrc6c-202ENSMUST00000106344 8847 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.2
ClppO88696 Atp5g1-202ENSMUST00000107684 596 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
ClppO88696 Mir8112-201ENSMUST00000184382 131 ntBASIC16.27■□□□□ 0.2
ClppO88696 Hint1-201ENSMUST00000020504 636 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
ClppO88696 Eif1a-202ENSMUST00000168382 1750 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
ClppO88696 Bin2-207ENSMUST00000183211 2036 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.2
ClppO88696 Mycl-201ENSMUST00000030407 3501 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
ClppO88696 Antxr1-201ENSMUST00000042025 5253 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.19
ClppO88696 Cacng6-202ENSMUST00000183200 1977 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
ClppO88696 Rilp-201ENSMUST00000042972 1489 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
ClppO88696 Tcf3-208ENSMUST00000105344 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.19
ClppO88696 C130074G19Rik-201ENSMUST00000048308 3035 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
ClppO88696 Gm43272-201ENSMUST00000200599 1584 ntBASIC16.26■□□□□ 0.19
ClppO88696 Amigo2-201ENSMUST00000053106 2871 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
ClppO88696 Tcf7l2-203ENSMUST00000111646 2839 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
ClppO88696 Gm12781-201ENSMUST00000146269 395 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
ClppO88696 Gfod2-203ENSMUST00000155038 951 ntTSL 2 BASIC16.26■□□□□ 0.19
ClppO88696 Gm43791-201ENSMUST00000202914 468 ntTSL 5 BASIC16.26■□□□□ 0.19
ClppO88696 4933406B15Rik-201ENSMUST00000220065 1182 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
ClppO88696 Krtcap3-201ENSMUST00000054829 904 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
ClppO88696 Olfr317-201ENSMUST00000075607 1128 ntAPPRIS P1 BASIC16.26■□□□□ 0.19
ClppO88696 Zc3h15-201ENSMUST00000081591 2111 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
ClppO88696 Gm10819-201ENSMUST00000099988 561 ntBASIC16.26■□□□□ 0.19
ClppO88696 Tmf1-201ENSMUST00000095664 5732 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
ClppO88696 Fam107a-202ENSMUST00000120411 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
ClppO88696 Mmp23-201ENSMUST00000030937 1434 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
ClppO88696 Gm8258-201ENSMUST00000055593 1449 ntBASIC16.26■□□□□ 0.19
ClppO88696 Cd47-201ENSMUST00000084838 5277 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
ClppO88696 Tbc1d10b-201ENSMUST00000120705 3614 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
ClppO88696 Sh2b1-202ENSMUST00000205340 3366 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
ClppO88696 Sgk1-202ENSMUST00000092673 2576 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
ClppO88696 Gm9774-202ENSMUST00000192538 1392 ntAPPRIS P1 BASIC16.26■□□□□ 0.19
ClppO88696 Hap1-201ENSMUST00000103124 2120 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
ClppO88696 Ndufv3-201ENSMUST00000046288 1537 ntAPPRIS P4 TSL 1 (best) BASIC16.25■□□□□ 0.19
ClppO88696 Erlin1-201ENSMUST00000071698 3228 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
ClppO88696 Cep57-208ENSMUST00000147115 2262 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
ClppO88696 Nit1-202ENSMUST00000111295 1335 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
ClppO88696 Hmga1-204ENSMUST00000118570 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC16.25■□□□□ 0.19
ClppO88696 4930426D05Rik-202ENSMUST00000139804 1650 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
ClppO88696 Fam83f-201ENSMUST00000023044 2988 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
ClppO88696 Lrch4-204ENSMUST00000176667 2209 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
ClppO88696 Mrpl37-201ENSMUST00000030365 1498 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
ClppO88696 Pias4-201ENSMUST00000005064 2571 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
ClppO88696 Chsy3-201ENSMUST00000080721 2931 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
ClppO88696 Gm11355-201ENSMUST00000121120 306 ntBASIC16.25■□□□□ 0.19
Retrieved 100 of 76,532 protein–RNA pairs in 36.1 ms