Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Ggnbp2-201ENSMUST00000018547 2478 ntTSL 5 BASIC13.93□□□□□ -0.18
Hmgb3O54879 Map2k5-201ENSMUST00000034920 2310 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Hmgb3O54879 Brap-201ENSMUST00000031414 3744 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Hmgb3O54879 Fam81a-201ENSMUST00000034749 3703 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Hmgb3O54879 Nrm-201ENSMUST00000074259 1466 ntAPPRIS P2 TSL 1 (best) BASIC13.93□□□□□ -0.18
Hmgb3O54879 Arhgap26-201ENSMUST00000097593 7898 ntAPPRIS P2 TSL 5 BASIC13.93□□□□□ -0.18
Hmgb3O54879 Nsmaf-201ENSMUST00000029910 3507 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Hmgb3O54879 Pid1-201ENSMUST00000168574 2664 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Hmgb3O54879 Slc16a3-202ENSMUST00000100130 2386 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Hmgb3O54879 Mta1-203ENSMUST00000109723 2790 ntAPPRIS ALT2 TSL 5 BASIC13.93□□□□□ -0.18
Hmgb3O54879 Mta1-204ENSMUST00000109726 2775 ntAPPRIS P3 TSL 1 (best) BASIC13.93□□□□□ -0.18
Hmgb3O54879 Mta1-205ENSMUST00000109727 2789 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
Hmgb3O54879 Cybrd1-201ENSMUST00000028403 5339 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Hmgb3O54879 Acox1-201ENSMUST00000066587 3987 ntAPPRIS P3 TSL 1 (best) BASIC13.93□□□□□ -0.18
Hmgb3O54879 2510002D24Rik-202ENSMUST00000123146 361 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
Hmgb3O54879 Gm29791-202ENSMUST00000207888 369 ntBASIC13.93□□□□□ -0.18
Hmgb3O54879 Bax-205ENSMUST00000211365 801 ntTSL 3 BASIC13.93□□□□□ -0.18
Hmgb3O54879 Bricd5-201ENSMUST00000054946 997 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Hmgb3O54879 Med18-201ENSMUST00000102567 1675 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Hmgb3O54879 Ankle2-206ENSMUST00000197188 4077 ntAPPRIS P3 TSL 1 (best) BASIC13.93□□□□□ -0.18
Hmgb3O54879 Cactin-201ENSMUST00000050867 2715 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Hmgb3O54879 Sppl3-201ENSMUST00000031530 3204 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Hmgb3O54879 Gabarap-201ENSMUST00000018711 1351 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Hmgb3O54879 Lmx1b-201ENSMUST00000041730 4790 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Hmgb3O54879 Anapc5-201ENSMUST00000086216 2760 ntAPPRIS P3 TSL 1 (best) BASIC13.93□□□□□ -0.18
Hmgb3O54879 Fubp1-205ENSMUST00000196695 2374 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
Hmgb3O54879 Pcyt2-203ENSMUST00000106188 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
Hmgb3O54879 Wnt8b-201ENSMUST00000041163 3376 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Hmgb3O54879 Tmem229b-201ENSMUST00000056660 3860 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Hmgb3O54879 Cul7-201ENSMUST00000043464 5530 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Hmgb3O54879 Scin-201ENSMUST00000002640 2995 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Hmgb3O54879 Erp29-203ENSMUST00000130451 5204 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Hmgb3O54879 Tmem80-201ENSMUST00000026578 1800 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Hmgb3O54879 Spef1-201ENSMUST00000028801 2328 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Hmgb3O54879 Dtx2-201ENSMUST00000005072 2562 ntAPPRIS P3 TSL 1 (best) BASIC13.92□□□□□ -0.18
Hmgb3O54879 Plch2-207ENSMUST00000139976 5322 ntAPPRIS P3 TSL 1 (best) BASIC13.92□□□□□ -0.18
Hmgb3O54879 Spg21-201ENSMUST00000034955 2680 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Hmgb3O54879 Pskh1-201ENSMUST00000049699 3255 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Hmgb3O54879 Dao-201ENSMUST00000086599 1525 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
Hmgb3O54879 Sntb2-201ENSMUST00000047425 3225 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
Hmgb3O54879 Nat9-201ENSMUST00000103038 1143 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Hmgb3O54879 Taf5l-202ENSMUST00000165628 2973 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Hmgb3O54879 Sox8-202ENSMUST00000173447 928 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
Hmgb3O54879 Mrpl40-201ENSMUST00000023391 1185 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Hmgb3O54879 Krt84-201ENSMUST00000023720 2570 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Hmgb3O54879 Zbtb11os1-201ENSMUST00000186480 1350 ntBASIC13.92□□□□□ -0.18
Hmgb3O54879 Gm10655-201ENSMUST00000098658 1397 ntBASIC13.92□□□□□ -0.18
Hmgb3O54879 Mapk8ip3-207ENSMUST00000121723 5410 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
Hmgb3O54879 Agbl3-205ENSMUST00000115017 3719 ntAPPRIS P3 TSL 1 (best) BASIC13.92□□□□□ -0.18
Hmgb3O54879 Sema6b-201ENSMUST00000001256 3736 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Hmgb3O54879 Prelid3a-201ENSMUST00000025411 2167 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Hmgb3O54879 Plekhg2-202ENSMUST00000119990 4880 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
Hmgb3O54879 Glmn-201ENSMUST00000078021 2015 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Hmgb3O54879 Plppr5-201ENSMUST00000039564 4670 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Hmgb3O54879 Tmem150b-202ENSMUST00000086364 2822 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
Hmgb3O54879 Mesd-201ENSMUST00000094215 4492 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Hmgb3O54879 Dennd1a-201ENSMUST00000102787 4342 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Hmgb3O54879 1700066B19Rik-201ENSMUST00000097617 2504 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Hmgb3O54879 Myo10-202ENSMUST00000110457 8125 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Hmgb3O54879 Tlnrd1-201ENSMUST00000094216 4433 ntAPPRIS P1 BASIC13.91□□□□□ -0.18
Hmgb3O54879 Tedc2-201ENSMUST00000024930 2166 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Hmgb3O54879 Agtr1a-201ENSMUST00000066412 2199 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Hmgb3O54879 Cobl-201ENSMUST00000046755 5615 ntAPPRIS P3 TSL 1 (best) BASIC13.91□□□□□ -0.18
Hmgb3O54879 Gm4285-201ENSMUST00000131222 902 ntTSL 2 BASIC13.91□□□□□ -0.18
Hmgb3O54879 P4hb-203ENSMUST00000168360 770 ntTSL 3 BASIC13.91□□□□□ -0.18
Hmgb3O54879 Nt5c-201ENSMUST00000021082 858 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Hmgb3O54879 Nfkbid-201ENSMUST00000046177 2039 ntAPPRIS P2 TSL 1 (best) BASIC13.91□□□□□ -0.18
Hmgb3O54879 Pdzd4-201ENSMUST00000002080 3970 ntAPPRIS P3 TSL 1 (best) BASIC13.91□□□□□ -0.18
Hmgb3O54879 Sox1ot-202ENSMUST00000186174 7420 ntTSL 5 BASIC13.91□□□□□ -0.18
Hmgb3O54879 Ube2r2-201ENSMUST00000040008 3600 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Hmgb3O54879 Tmtc4-204ENSMUST00000126867 2952 ntAPPRIS P1 TSL 5 BASIC13.91□□□□□ -0.18
Hmgb3O54879 Fam126a-202ENSMUST00000101513 1679 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
Hmgb3O54879 Ppan-201ENSMUST00000004203 1670 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Hmgb3O54879 Nptx2-201ENSMUST00000071782 2536 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Hmgb3O54879 Mrpl12-201ENSMUST00000043627 1316 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Hmgb3O54879 Zc3h14-204ENSMUST00000110105 3514 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Hmgb3O54879 Pon1-201ENSMUST00000002663 1513 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Hmgb3O54879 Olfr607-202ENSMUST00000214347 5706 ntAPPRIS P5 TSL 5 BASIC13.9□□□□□ -0.18
Hmgb3O54879 Phka1-204ENSMUST00000119229 6025 ntAPPRIS ALT2 TSL 5 BASIC13.9□□□□□ -0.18
Hmgb3O54879 Anapc7-203ENSMUST00000122010 2950 ntAPPRIS P1 TSL 5 BASIC13.9□□□□□ -0.18
Hmgb3O54879 Aida-206ENSMUST00000193625 1810 ntTSL 3 BASIC13.9□□□□□ -0.18
Hmgb3O54879 Slc5a10-203ENSMUST00000148584 2049 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Hmgb3O54879 Dph1-201ENSMUST00000044949 2139 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Hmgb3O54879 Relb-201ENSMUST00000049912 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
Hmgb3O54879 Tgfbr3l-201ENSMUST00000110993 1075 ntAPPRIS P1 TSL 5 BASIC13.9□□□□□ -0.18
Hmgb3O54879 Ssbp1-203ENSMUST00000117411 933 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Hmgb3O54879 Ikzf5-203ENSMUST00000128432 714 ntTSL 3 BASIC13.9□□□□□ -0.18
Hmgb3O54879 Gclm-206ENSMUST00000178826 1002 ntAPPRIS P1 TSL 5 BASIC13.9□□□□□ -0.18
Hmgb3O54879 Mir8112-201ENSMUST00000184382 131 ntBASIC13.9□□□□□ -0.18
Hmgb3O54879 Dnajb2-201ENSMUST00000055223 1199 ntTSL 5 BASIC13.9□□□□□ -0.18
Hmgb3O54879 1700012B09Rik-201ENSMUST00000060330 688 ntAPPRIS P2 TSL 1 (best) BASIC13.9□□□□□ -0.18
Hmgb3O54879 4833418N02Rik-202ENSMUST00000146560 1495 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
Hmgb3O54879 Zfp943-202ENSMUST00000153985 1598 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
Hmgb3O54879 Kcnt1-213ENSMUST00000198204 4714 ntAPPRIS ALT2 TSL 5 BASIC13.9□□□□□ -0.18
Hmgb3O54879 Nxpe3-201ENSMUST00000099705 6430 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Hmgb3O54879 Tspyl2-201ENSMUST00000044509 2696 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Hmgb3O54879 CT010478.1-201ENSMUST00000220747 2787 ntBASIC13.9□□□□□ -0.18
Hmgb3O54879 Rffl-206ENSMUST00000108173 3489 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Hmgb3O54879 Celf1-206ENSMUST00000111451 4678 ntAPPRIS ALT1 TSL 5 BASIC13.9□□□□□ -0.18
Hmgb3O54879 Nacad-201ENSMUST00000045713 4892 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Retrieved 100 of 76,532 protein–RNA pairs in 41.4 ms