Protein–RNA interactions for Protein: B1AR17

Chd3, Chromodomain helicase DNA-binding protein 3, mousemouse

Predictions only

Length 2,055 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd3B1AR17 Ino80e-203ENSMUST00000106343 1973 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Chd3B1AR17 Sqstm1-201ENSMUST00000015981 2673 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Chd3B1AR17 Klk12-202ENSMUST00000107970 1115 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
Chd3B1AR17 Kxd1-202ENSMUST00000117580 696 ntTSL 5 BASIC16.34■□□□□ 0.21
Chd3B1AR17 Mis18bp1-202ENSMUST00000124201 717 ntTSL 3 BASIC16.34■□□□□ 0.21
Chd3B1AR17 Pym1-202ENSMUST00000163377 1158 ntAPPRIS P4 TSL 1 (best) BASIC16.34■□□□□ 0.21
Chd3B1AR17 Gm17092-201ENSMUST00000166606 698 ntTSL 2 BASIC16.34■□□□□ 0.21
Chd3B1AR17 Fbxo6-208ENSMUST00000168503 1240 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
Chd3B1AR17 E2f7-205ENSMUST00000173634 827 ntTSL 2 BASIC16.34■□□□□ 0.21
Chd3B1AR17 Gm44430-201ENSMUST00000203376 995 ntBASIC16.34■□□□□ 0.21
Chd3B1AR17 Cebpzos-201ENSMUST00000063817 753 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
Chd3B1AR17 Efemp2-204ENSMUST00000165485 1557 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Chd3B1AR17 Pex6-201ENSMUST00000002840 3200 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Chd3B1AR17 0610009B22Rik-202ENSMUST00000109098 892 ntAPPRIS P1 TSL 3 BASIC16.34■□□□□ 0.21
Chd3B1AR17 Mpv17l-205ENSMUST00000143697 580 ntTSL 2 BASIC16.34■□□□□ 0.21
Chd3B1AR17 Gm34391-201ENSMUST00000203706 907 ntBASIC16.34■□□□□ 0.21
Chd3B1AR17 Slc29a1-222ENSMUST00000171847 2033 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
Chd3B1AR17 Hspb6-201ENSMUST00000044048 1363 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Chd3B1AR17 Relb-201ENSMUST00000049912 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.21
Chd3B1AR17 Bcl7b-203ENSMUST00000111188 1434 ntAPPRIS ALT1 TSL 5 BASIC16.33■□□□□ 0.21
Chd3B1AR17 Itgb7-201ENSMUST00000001327 2674 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
Chd3B1AR17 Hsf5-201ENSMUST00000093956 4158 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.21
Chd3B1AR17 Dohh-202ENSMUST00000121047 946 ntTSL 2 BASIC16.33■□□□□ 0.21
Chd3B1AR17 Sbsn-202ENSMUST00000182227 432 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.21
Chd3B1AR17 Sbsn-203ENSMUST00000182229 732 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.21
Chd3B1AR17 Gm45631-201ENSMUST00000210318 1244 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
Chd3B1AR17 Pgpep1-208ENSMUST00000211715 676 ntTSL 3 BASIC16.33■□□□□ 0.21
Chd3B1AR17 Gm37711-201ENSMUST00000194907 1749 ntTSL 5 BASIC16.33■□□□□ 0.21
Chd3B1AR17 Ecel1-204ENSMUST00000161002 3033 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Chd3B1AR17 Hps4-201ENSMUST00000035279 2836 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Chd3B1AR17 Sdf4-203ENSMUST00000105578 1654 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Chd3B1AR17 Zbtb45-201ENSMUST00000051390 2171 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Chd3B1AR17 Sec1-201ENSMUST00000040636 2470 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Chd3B1AR17 Fgf20-202ENSMUST00000118639 587 ntTSL 3 BASIC16.33■□□□□ 0.2
Chd3B1AR17 Alkal1-201ENSMUST00000133144 971 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Chd3B1AR17 Gm15890-201ENSMUST00000161024 770 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Chd3B1AR17 AC153794.1-201ENSMUST00000169148 126 ntBASIC16.33■□□□□ 0.2
Chd3B1AR17 Tomm22-201ENSMUST00000023062 1031 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Chd3B1AR17 Cklf-201ENSMUST00000034342 667 ntAPPRIS P4 TSL 1 (best) BASIC16.33■□□□□ 0.2
Chd3B1AR17 Eps8-203ENSMUST00000111878 3560 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Chd3B1AR17 Gm6598-201ENSMUST00000202719 2615 ntBASIC16.33■□□□□ 0.2
Chd3B1AR17 Cdca7-201ENSMUST00000102691 2424 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Chd3B1AR17 Nmt2-203ENSMUST00000102989 2162 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
Chd3B1AR17 Syt9-201ENSMUST00000073459 3817 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Chd3B1AR17 Eif6-202ENSMUST00000109638 1382 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Chd3B1AR17 Ube2f-204ENSMUST00000178627 1363 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Chd3B1AR17 Atp5b-201ENSMUST00000026459 1916 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Chd3B1AR17 Hirip3-201ENSMUST00000037248 2766 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Chd3B1AR17 Polr3e-203ENSMUST00000207481 2545 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Chd3B1AR17 Jam2-201ENSMUST00000098407 1998 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Chd3B1AR17 A130010J15Rik-201ENSMUST00000110831 2257 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Chd3B1AR17 Slc25a20-201ENSMUST00000035222 1783 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Chd3B1AR17 Aptx-203ENSMUST00000108103 2391 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
Chd3B1AR17 Zfp326-201ENSMUST00000031227 2667 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Chd3B1AR17 Dlg1-202ENSMUST00000064477 4663 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
Chd3B1AR17 Hpca-203ENSMUST00000116442 1568 ntAPPRIS P1 TSL 3 BASIC16.32■□□□□ 0.2
Chd3B1AR17 Rnf181-203ENSMUST00000114095 869 ntTSL 3 BASIC16.32■□□□□ 0.2
Chd3B1AR17 Lce1k-201ENSMUST00000179917 663 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
Chd3B1AR17 Stard3nl-208ENSMUST00000200323 1128 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Chd3B1AR17 Kdm3b-201ENSMUST00000043775 6363 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Chd3B1AR17 Arpc1a-201ENSMUST00000031625 1632 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Chd3B1AR17 Taf6l-213ENSMUST00000189739 1794 ntTSL 5 BASIC16.32■□□□□ 0.2
Chd3B1AR17 Sh3glb1-205ENSMUST00000199854 1416 ntTSL 5 BASIC16.32■□□□□ 0.2
Chd3B1AR17 Vps4a-201ENSMUST00000034388 2178 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Chd3B1AR17 Fst-201ENSMUST00000022287 2556 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Chd3B1AR17 Sri-205ENSMUST00000148633 2251 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Chd3B1AR17 Zfp92-202ENSMUST00000086470 2050 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Chd3B1AR17 Gm7153-201ENSMUST00000117092 455 ntBASIC16.31■□□□□ 0.2
Chd3B1AR17 Gm11729-201ENSMUST00000124901 713 ntTSL 3 BASIC16.31■□□□□ 0.2
Chd3B1AR17 Ciao1-204ENSMUST00000174030 1109 ntTSL 5 BASIC16.31■□□□□ 0.2
Chd3B1AR17 Gm37280-201ENSMUST00000194583 375 ntTSL 3 BASIC16.31■□□□□ 0.2
Chd3B1AR17 Nme3-201ENSMUST00000024978 715 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Chd3B1AR17 Lce1a1-201ENSMUST00000074142 705 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Chd3B1AR17 Rab37-202ENSMUST00000067754 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Chd3B1AR17 Wnk2-204ENSMUST00000110096 6534 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
Chd3B1AR17 Zkscan2-203ENSMUST00000128217 2218 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Chd3B1AR17 Tmem163-203ENSMUST00000160616 2657 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
Chd3B1AR17 Tmem198-201ENSMUST00000050899 2456 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Chd3B1AR17 Csk-201ENSMUST00000034863 2749 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Chd3B1AR17 Nfe2l1-202ENSMUST00000107657 3869 ntAPPRIS P3 TSL 5 BASIC16.31■□□□□ 0.2
Chd3B1AR17 Ddn-201ENSMUST00000075444 3740 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Chd3B1AR17 Gm27459-201ENSMUST00000184860 107 ntBASIC16.31■□□□□ 0.2
Chd3B1AR17 Mrpl36-202ENSMUST00000221730 717 ntAPPRIS P1 TSL 3 BASIC16.31■□□□□ 0.2
Chd3B1AR17 Mettl21a-202ENSMUST00000114079 2030 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Chd3B1AR17 Cd302-202ENSMUST00000074606 1354 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Chd3B1AR17 Mapkapk3-201ENSMUST00000035194 2816 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Chd3B1AR17 4933434E20Rik-209ENSMUST00000162114 1411 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Chd3B1AR17 Rsph6a-202ENSMUST00000076887 1580 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Chd3B1AR17 Agk-201ENSMUST00000031977 2531 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Chd3B1AR17 Usb1-201ENSMUST00000034245 1758 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Chd3B1AR17 Kdm1a-202ENSMUST00000105847 3028 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
Chd3B1AR17 AC124569.2-201ENSMUST00000225998 818 ntBASIC16.3■□□□□ 0.2
Chd3B1AR17 Serf2-201ENSMUST00000099475 525 ntTSL 2 BASIC16.3■□□□□ 0.2
Chd3B1AR17 Miga1-205ENSMUST00000199397 2842 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Chd3B1AR17 Ak5-201ENSMUST00000045262 3323 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Chd3B1AR17 Mvk-201ENSMUST00000043760 1660 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
Chd3B1AR17 Cdan1-202ENSMUST00000110701 6384 ntAPPRIS P2 TSL 5 BASIC16.3■□□□□ 0.2
Chd3B1AR17 Whrn-205ENSMUST00000095038 2665 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Chd3B1AR17 Vgf-204ENSMUST00000190827 2834 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Chd3B1AR17 Nsmf-203ENSMUST00000100334 2957 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Retrieved 100 of 76,532 protein–RNA pairs in 36.6 ms