Protein–RNA interactions for Protein: Q3U827

Rnf180, E3 ubiquitin-protein ligase RNF180, mousemouse

Predictions only

Length 592 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf180Q3U827 Aldoa-214ENSMUST00000207534 741 ntAPPRIS P1 TSL 5 BASIC29.43■■■□□ 2.3
Rnf180Q3U827 Cox11-201ENSMUST00000020851 1224 ntAPPRIS P2 TSL 1 (best) BASIC29.43■■■□□ 2.3
Rnf180Q3U827 Serp2-204ENSMUST00000228055 705 ntBASIC29.43■■■□□ 2.3
Rnf180Q3U827 Yars2-201ENSMUST00000059955 1574 ntAPPRIS P1 TSL 1 (best) BASIC29.42■■■□□ 2.3
Rnf180Q3U827 Ccdc85c-201ENSMUST00000136175 1302 ntAPPRIS ALT2 TSL 5 BASIC29.42■■■□□ 2.3
Rnf180Q3U827 Smox-206ENSMUST00000110183 1159 ntTSL 1 (best) BASIC29.4■■■□□ 2.3
Rnf180Q3U827 Gm45364-201ENSMUST00000210883 159 ntBASIC29.4■■■□□ 2.3
Rnf180Q3U827 Nenf-201ENSMUST00000046770 742 ntAPPRIS P1 TSL 1 (best) BASIC29.4■■■□□ 2.3
Rnf180Q3U827 Gm10645-201ENSMUST00000098605 1090 ntAPPRIS P1 BASIC29.39■■■□□ 2.3
Rnf180Q3U827 Socs2-202ENSMUST00000119917 948 ntAPPRIS P1 TSL 1 (best) BASIC29.38■■■□□ 2.29
Rnf180Q3U827 4930426D05Rik-204ENSMUST00000144487 1393 ntTSL 5 BASIC29.38■■■□□ 2.29
Rnf180Q3U827 Sin3b-202ENSMUST00000109950 1024 ntTSL 1 (best) BASIC29.37■■■□□ 2.29
Rnf180Q3U827 Lin7b-201ENSMUST00000003971 735 ntAPPRIS P1 TSL 1 (best) BASIC29.37■■■□□ 2.29
Rnf180Q3U827 Gm12100-201ENSMUST00000150255 1933 ntTSL 1 (best) BASIC29.37■■■□□ 2.29
Rnf180Q3U827 Rab4a-202ENSMUST00000118535 1419 ntAPPRIS P1 TSL 1 (best) BASIC29.37■■■□□ 2.29
Rnf180Q3U827 Slc50a1-201ENSMUST00000029565 1022 ntAPPRIS P1 TSL 1 (best) BASIC29.36■■■□□ 2.29
Rnf180Q3U827 Zxdc-201ENSMUST00000045740 1612 ntAPPRIS ALT2 TSL 1 (best) BASIC29.35■■■□□ 2.29
Rnf180Q3U827 Tmem170b-202ENSMUST00000221694 602 ntTSL 3 BASIC29.35■■■□□ 2.29
Rnf180Q3U827 Scand1-201ENSMUST00000079125 759 ntAPPRIS P1 TSL 1 (best) BASIC29.35■■■□□ 2.29
Rnf180Q3U827 Gas7-203ENSMUST00000108681 1595 ntAPPRIS ALT2 TSL 5 BASIC29.35■■■□□ 2.29
Rnf180Q3U827 Arpc2-201ENSMUST00000006467 1404 ntAPPRIS P1 TSL 1 (best) BASIC29.33■■■□□ 2.29
Rnf180Q3U827 Ramp1-202ENSMUST00000165855 852 ntTSL 2 BASIC29.32■■■□□ 2.28
Rnf180Q3U827 1700097N02Rik-201ENSMUST00000188852 845 ntTSL 3 BASIC29.32■■■□□ 2.28
Rnf180Q3U827 Frs3-201ENSMUST00000113296 2144 ntAPPRIS P1 TSL 1 (best) BASIC29.32■■■□□ 2.28
Rnf180Q3U827 Cdkn2b-201ENSMUST00000097981 1393 ntAPPRIS P1 TSL 1 (best) BASIC29.3■■■□□ 2.28
Rnf180Q3U827 Phf2os1-201ENSMUST00000123212 498 ntTSL 3 BASIC29.3■■■□□ 2.28
Rnf180Q3U827 Pde6d-203ENSMUST00000146220 879 ntTSL 2 BASIC29.3■■■□□ 2.28
Rnf180Q3U827 Gm45102-201ENSMUST00000207427 857 ntBASIC29.3■■■□□ 2.28
Rnf180Q3U827 Gm7544-201ENSMUST00000222426 828 ntAPPRIS P1 BASIC29.3■■■□□ 2.28
Rnf180Q3U827 Pde6d-201ENSMUST00000027444 1159 ntAPPRIS P1 TSL 1 (best) BASIC29.3■■■□□ 2.28
Rnf180Q3U827 Rpl35-201ENSMUST00000080861 946 ntAPPRIS P1 TSL 1 (best) BASIC29.3■■■□□ 2.28
Rnf180Q3U827 Hras-202ENSMUST00000097957 1199 ntAPPRIS P1 TSL 2 BASIC29.3■■■□□ 2.28
Rnf180Q3U827 Arpp19-206ENSMUST00000168301 599 ntTSL 5 BASIC29.29■■■□□ 2.28
Rnf180Q3U827 Tm2d2-201ENSMUST00000033961 1281 ntAPPRIS P1 TSL 1 (best) BASIC29.29■■■□□ 2.28
Rnf180Q3U827 Smad7-202ENSMUST00000168918 1882 ntAPPRIS P1 TSL 1 (best) BASIC29.28■■■□□ 2.28
Rnf180Q3U827 2510046G10Rik-202ENSMUST00000187458 1052 ntBASIC29.28■■■□□ 2.28
Rnf180Q3U827 Ppp1cb-206ENSMUST00000202078 383 ntTSL 5 BASIC29.28■■■□□ 2.28
Rnf180Q3U827 Raly-202ENSMUST00000058089 1747 ntAPPRIS P3 TSL 1 (best) BASIC29.28■■■□□ 2.28
Rnf180Q3U827 Guf1-201ENSMUST00000031113 1769 ntTSL 1 (best) BASIC29.26■■■□□ 2.27
Rnf180Q3U827 E2f4-201ENSMUST00000015003 1993 ntAPPRIS P1 TSL 1 (best) BASIC29.25■■■□□ 2.27
Rnf180Q3U827 Vamp4-206ENSMUST00000150040 901 ntAPPRIS P1 TSL 5 BASIC29.25■■■□□ 2.27
Rnf180Q3U827 AC153911.1-201ENSMUST00000220378 758 ntBASIC29.25■■■□□ 2.27
Rnf180Q3U827 Fam92a-208ENSMUST00000177837 1325 ntAPPRIS ALT2 TSL 5 BASIC29.24■■■□□ 2.27
Rnf180Q3U827 Nudc-201ENSMUST00000030665 1316 ntAPPRIS P1 TSL 1 (best) BASIC29.24■■■□□ 2.27
Rnf180Q3U827 Hpf1-204ENSMUST00000146863 531 ntTSL 2 BASIC29.24■■■□□ 2.27
Rnf180Q3U827 Gm30023-201ENSMUST00000197970 889 ntBASIC29.24■■■□□ 2.27
Rnf180Q3U827 Polr1d-201ENSMUST00000050970 1196 ntAPPRIS P1 TSL 1 (best) BASIC29.24■■■□□ 2.27
Rnf180Q3U827 Azin2-201ENSMUST00000030581 2063 ntAPPRIS P1 TSL 1 (best) BASIC29.24■■■□□ 2.27
Rnf180Q3U827 Eif4e2-203ENSMUST00000113230 1569 ntTSL 1 (best) BASIC29.23■■■□□ 2.27
Rnf180Q3U827 Gm15820-201ENSMUST00000201566 728 ntBASIC29.23■■■□□ 2.27
Rnf180Q3U827 Fam98c-209ENSMUST00000164589 1293 ntAPPRIS P1 TSL 5 BASIC29.22■■■□□ 2.27
Rnf180Q3U827 Tmem98-201ENSMUST00000040865 1633 ntAPPRIS P1 TSL 1 (best) BASIC29.21■■■□□ 2.27
Rnf180Q3U827 Trnau1ap-203ENSMUST00000105962 961 ntTSL 5 BASIC29.2■■■□□ 2.26
Rnf180Q3U827 Gm20109-201ENSMUST00000180802 671 ntTSL 1 (best) BASIC29.2■■■□□ 2.26
Rnf180Q3U827 Pkig-202ENSMUST00000099105 640 ntAPPRIS P1 TSL 2 BASIC29.2■■■□□ 2.26
Rnf180Q3U827 Mlf2-202ENSMUST00000180095 1475 ntAPPRIS P1 TSL 1 (best) BASIC29.19■■■□□ 2.26
Rnf180Q3U827 Gm14117-201ENSMUST00000122417 843 ntBASIC29.18■■■□□ 2.26
Rnf180Q3U827 Spryd7-202ENSMUST00000100496 1459 ntTSL 1 (best) BASIC29.17■■■□□ 2.26
Rnf180Q3U827 AC102554.1-201ENSMUST00000216236 537 ntTSL 5 BASIC29.17■■■□□ 2.26
Rnf180Q3U827 Hagh-201ENSMUST00000024974 1101 ntAPPRIS ALT1 TSL 5 BASIC29.17■■■□□ 2.26
Rnf180Q3U827 A930002H24Rik-201ENSMUST00000050753 492 ntAPPRIS P1 BASIC29.17■■■□□ 2.26
Rnf180Q3U827 H1fx-201ENSMUST00000056403 1217 ntAPPRIS P1 BASIC29.17■■■□□ 2.26
Rnf180Q3U827 Hook1-202ENSMUST00000107083 1506 ntTSL 1 (best) BASIC29.16■■■□□ 2.26
Rnf180Q3U827 Smox-205ENSMUST00000110182 985 ntTSL 1 (best) BASIC29.15■■■□□ 2.26
Rnf180Q3U827 Gm13256-201ENSMUST00000131297 520 ntTSL 3 BASIC29.15■■■□□ 2.26
Rnf180Q3U827 Id3-201ENSMUST00000008016 1278 ntAPPRIS P1 TSL 1 (best) BASIC29.15■■■□□ 2.26
Rnf180Q3U827 Tmem42-201ENSMUST00000084733 1041 ntAPPRIS P1 TSL 1 (best) BASIC29.15■■■□□ 2.26
Rnf180Q3U827 Hrasls-204ENSMUST00000162747 854 ntAPPRIS P1 TSL 1 (best) BASIC29.14■■■□□ 2.26
Rnf180Q3U827 Rpia-201ENSMUST00000066134 1829 ntAPPRIS P1 TSL 1 (best) BASIC29.13■■■□□ 2.25
Rnf180Q3U827 Syce2-202ENSMUST00000136026 1686 ntAPPRIS P3 TSL 1 (best) BASIC29.12■■■□□ 2.25
Rnf180Q3U827 Msrb1-201ENSMUST00000101800 1211 ntAPPRIS P1 TSL 1 (best) BASIC29.12■■■□□ 2.25
Rnf180Q3U827 Dusp15-202ENSMUST00000109811 753 ntTSL 1 (best) BASIC29.11■■■□□ 2.25
Rnf180Q3U827 Gemin7-202ENSMUST00000117222 1023 ntAPPRIS P1 TSL 2 BASIC29.11■■■□□ 2.25
Rnf180Q3U827 Slc37a3-211ENSMUST00000202749 434 ntTSL 5 BASIC29.11■■■□□ 2.25
Rnf180Q3U827 A530095I07Rik-201ENSMUST00000070942 847 ntTSL 1 (best) BASIC29.11■■■□□ 2.25
Rnf180Q3U827 Gm12818-201ENSMUST00000117562 1349 ntBASIC29.11■■■□□ 2.25
Rnf180Q3U827 Rhobtb3-202ENSMUST00000109606 1676 ntTSL 1 (best) BASIC29.11■■■□□ 2.25
Rnf180Q3U827 Raly-203ENSMUST00000109701 1709 ntAPPRIS P3 TSL 1 (best) BASIC29.11■■■□□ 2.25
Rnf180Q3U827 Gm12905-201ENSMUST00000153814 658 ntTSL 2 BASIC29.1■■■□□ 2.25
Rnf180Q3U827 Rps19-202ENSMUST00000108429 633 ntAPPRIS P1 TSL 2 BASIC29.09■■■□□ 2.25
Rnf180Q3U827 Ipmk-202ENSMUST00000118381 1323 ntTSL 1 (best) BASIC29.09■■■□□ 2.25
Rnf180Q3U827 Gm2415-202ENSMUST00000134688 401 ntTSL 2 BASIC29.08■■■□□ 2.25
Rnf180Q3U827 0610009L18Rik-201ENSMUST00000143813 619 ntTSL 2 BASIC29.08■■■□□ 2.25
Rnf180Q3U827 Gnas-207ENSMUST00000109085 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC29.07■■■□□ 2.24
Rnf180Q3U827 Mpv17l2-201ENSMUST00000038626 980 ntAPPRIS P1 TSL 1 (best) BASIC29.07■■■□□ 2.24
Rnf180Q3U827 Cdkn2d-203ENSMUST00000215619 1423 ntAPPRIS P1 TSL 1 (best) BASIC29.06■■■□□ 2.24
Rnf180Q3U827 Dexi-201ENSMUST00000038281 1389 ntAPPRIS P1 TSL 1 (best) BASIC29.06■■■□□ 2.24
Rnf180Q3U827 Stard10-202ENSMUST00000163799 1723 ntTSL 1 (best) BASIC29.05■■■□□ 2.24
Rnf180Q3U827 Mrps7-201ENSMUST00000058109 1962 ntAPPRIS P1 TSL 1 (best) BASIC29.04■■■□□ 2.24
Rnf180Q3U827 Gm9910-201ENSMUST00000195385 1550 ntBASIC29.04■■■□□ 2.24
Rnf180Q3U827 Prrx2-201ENSMUST00000041659 1441 ntAPPRIS P2 TSL 1 (best) BASIC29.03■■■□□ 2.24
Rnf180Q3U827 Gm13889-201ENSMUST00000099689 1386 ntBASIC29.03■■■□□ 2.24
Rnf180Q3U827 Coprs-201ENSMUST00000033839 793 ntAPPRIS P1 TSL 1 (best) BASIC29.03■■■□□ 2.24
Rnf180Q3U827 Fkbp1b-201ENSMUST00000020964 976 ntAPPRIS P1 TSL 1 (best) BASIC29.02■■■□□ 2.24
Rnf180Q3U827 AC151971.4-201ENSMUST00000214717 704 ntBASIC29.02■■■□□ 2.24
Rnf180Q3U827 Gm6217-201ENSMUST00000222182 829 ntAPPRIS P1 BASIC29.02■■■□□ 2.24
Rnf180Q3U827 Yrdc-201ENSMUST00000102628 1634 ntAPPRIS P1 TSL 1 (best) BASIC29.02■■■□□ 2.24
Rnf180Q3U827 Fam149b-202ENSMUST00000051915 1981 ntAPPRIS ALT2 TSL 5 BASIC29.01■■■□□ 2.23
Rnf180Q3U827 AC166358.2-201ENSMUST00000223403 734 ntTSL 5 BASIC29■■■□□ 2.23
Rnf180Q3U827 Tmem150a-202ENSMUST00000132243 1478 ntTSL 5 BASIC28.99■■■□□ 2.23
Retrieved 100 of 76,532 protein–RNA pairs in 26.8 ms