Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 4932443I19Rik-204ENSMUST00000214337 1212 ntAPPRIS ALT2 TSL 5 BASIC18.44■□□□□ 0.54
Prpf40aQ9R1C7 Tsc22d2-203ENSMUST00000199164 4659 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
Prpf40aQ9R1C7 Acaa1a-201ENSMUST00000039784 1762 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Prpf40aQ9R1C7 Camk2d-226ENSMUST00000199300 5524 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
Prpf40aQ9R1C7 Bcor-202ENSMUST00000065143 6839 ntAPPRIS P4 TSL 1 (best) BASIC18.43■□□□□ 0.54
Prpf40aQ9R1C7 Rnf128-201ENSMUST00000113026 2750 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Prpf40aQ9R1C7 Ttbk1-201ENSMUST00000047034 6959 ntAPPRIS P2 TSL 5 BASIC18.43■□□□□ 0.54
Prpf40aQ9R1C7 Hoxb2-201ENSMUST00000100523 1628 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Prpf40aQ9R1C7 Tedc2-201ENSMUST00000024930 2166 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Prpf40aQ9R1C7 Mrps18c-203ENSMUST00000112901 820 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
Prpf40aQ9R1C7 Bad-202ENSMUST00000113423 990 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
Prpf40aQ9R1C7 Eda-204ENSMUST00000113777 1056 ntTSL 5 BASIC18.43■□□□□ 0.54
Prpf40aQ9R1C7 Nrn1-202ENSMUST00000122286 691 ntTSL 3 BASIC18.43■□□□□ 0.54
Prpf40aQ9R1C7 Gm26643-201ENSMUST00000180854 1274 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
Prpf40aQ9R1C7 Eda-201ENSMUST00000071453 1152 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
Prpf40aQ9R1C7 Olfr464-201ENSMUST00000074874 1084 ntAPPRIS P1 BASIC18.43■□□□□ 0.54
Prpf40aQ9R1C7 Chmp2b-201ENSMUST00000004965 1838 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Prpf40aQ9R1C7 Tle3-211ENSMUST00000161689 2836 ntTSL 2 BASIC18.43■□□□□ 0.54
Prpf40aQ9R1C7 Ppp1r1b-204ENSMUST00000137634 1343 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
Prpf40aQ9R1C7 Git2-215ENSMUST00000178440 4944 ntTSL 5 BASIC18.43■□□□□ 0.54
Prpf40aQ9R1C7 Git2-201ENSMUST00000043283 4938 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
Prpf40aQ9R1C7 Prrt4-201ENSMUST00000159200 3411 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Prpf40aQ9R1C7 Mbp-201ENSMUST00000047865 2492 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
Prpf40aQ9R1C7 Csnk1a1-206ENSMUST00000165721 2323 ntAPPRIS ALT1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Prpf40aQ9R1C7 Chka-202ENSMUST00000072055 2549 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
Prpf40aQ9R1C7 4933428P19Rik-201ENSMUST00000199616 1376 ntBASIC18.42■□□□□ 0.54
Prpf40aQ9R1C7 Dtnbp1-203ENSMUST00000220555 1589 ntAPPRIS ALT2 TSL 5 BASIC18.42■□□□□ 0.54
Prpf40aQ9R1C7 Plac9a-201ENSMUST00000052286 1555 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Prpf40aQ9R1C7 Cct6b-201ENSMUST00000021040 1787 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Prpf40aQ9R1C7 Zkscan14-201ENSMUST00000031632 1967 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Prpf40aQ9R1C7 Dennd4b-202ENSMUST00000129564 5647 ntAPPRIS ALT2 TSL 5 BASIC18.42■□□□□ 0.54
Prpf40aQ9R1C7 Fgfr1-214ENSMUST00000178276 4741 ntTSL 5 BASIC18.42■□□□□ 0.54
Prpf40aQ9R1C7 Acads-201ENSMUST00000031524 1870 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Prpf40aQ9R1C7 Taf6l-201ENSMUST00000003777 1869 ntTSL 5 BASIC18.42■□□□□ 0.54
Prpf40aQ9R1C7 Tnfrsf25-201ENSMUST00000025706 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
Prpf40aQ9R1C7 Rpf1-201ENSMUST00000029838 1661 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Prpf40aQ9R1C7 Zbtb24-202ENSMUST00000213797 2734 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
Prpf40aQ9R1C7 Gm14114-201ENSMUST00000139345 287 ntTSL 3 BASIC18.42■□□□□ 0.54
Prpf40aQ9R1C7 Stambp-206ENSMUST00000206400 2144 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Prpf40aQ9R1C7 Rgcc-201ENSMUST00000022595 918 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Prpf40aQ9R1C7 Pfdn4-201ENSMUST00000063682 935 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Prpf40aQ9R1C7 Hand1-201ENSMUST00000036917 1904 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Prpf40aQ9R1C7 Nmnat3-201ENSMUST00000112935 2166 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Prpf40aQ9R1C7 Slc47a1-201ENSMUST00000010267 2639 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
Prpf40aQ9R1C7 B4galnt4-201ENSMUST00000048002 3556 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Prpf40aQ9R1C7 Lrig3-201ENSMUST00000074807 4016 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Prpf40aQ9R1C7 Cdk10-201ENSMUST00000036880 1642 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Prpf40aQ9R1C7 Dnajc3-201ENSMUST00000022734 5141 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Prpf40aQ9R1C7 Agrn-206ENSMUST00000180572 6891 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
Prpf40aQ9R1C7 Wnt10b-207ENSMUST00000228594 1510 ntAPPRIS P1 BASIC18.41■□□□□ 0.54
Prpf40aQ9R1C7 Rps5-202ENSMUST00000108539 794 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
Prpf40aQ9R1C7 Rpl18-ps2-201ENSMUST00000118863 567 ntBASIC18.41■□□□□ 0.54
Prpf40aQ9R1C7 Gm11539-201ENSMUST00000119837 557 ntBASIC18.41■□□□□ 0.54
Prpf40aQ9R1C7 Gm13436-201ENSMUST00000120418 567 ntBASIC18.41■□□□□ 0.54
Prpf40aQ9R1C7 Snrnp48-202ENSMUST00000178564 847 ntTSL 5 BASIC18.41■□□□□ 0.54
Prpf40aQ9R1C7 Gm10830-201ENSMUST00000186379 636 ntTSL 5 BASIC18.41■□□□□ 0.54
Prpf40aQ9R1C7 Gm45618-201ENSMUST00000209890 660 ntAPPRIS P1 BASIC18.41■□□□□ 0.54
Prpf40aQ9R1C7 Gm17949-201ENSMUST00000210548 1179 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
Prpf40aQ9R1C7 Bax-201ENSMUST00000033093 867 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Prpf40aQ9R1C7 Prorsd1-201ENSMUST00000039900 918 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Prpf40aQ9R1C7 Nrxn1-206ENSMUST00000160800 5683 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
Prpf40aQ9R1C7 Gm26580-201ENSMUST00000181002 2095 ntTSL 5 BASIC18.41■□□□□ 0.54
Prpf40aQ9R1C7 Mpdu1-201ENSMUST00000018905 1321 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Prpf40aQ9R1C7 Gpr20-201ENSMUST00000064166 2144 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Prpf40aQ9R1C7 Gm27029-201ENSMUST00000107257 1898 ntAPPRIS ALT2 TSL 5 BASIC18.41■□□□□ 0.54
Prpf40aQ9R1C7 Vrk2-201ENSMUST00000078362 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Prpf40aQ9R1C7 Arntl-204ENSMUST00000210238 2976 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
Prpf40aQ9R1C7 Zbtb45-201ENSMUST00000051390 2171 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Prpf40aQ9R1C7 Iars2-201ENSMUST00000027921 5471 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Prpf40aQ9R1C7 Nr1h2-213ENSMUST00000167197 1944 ntAPPRIS P3 TSL 5 BASIC18.41■□□□□ 0.54
Prpf40aQ9R1C7 Kctd9-205ENSMUST00000152243 2528 ntTSL 2 BASIC18.41■□□□□ 0.54
Prpf40aQ9R1C7 Spata18-202ENSMUST00000071077 1978 ntAPPRIS P2 TSL 5 BASIC18.41■□□□□ 0.54
Prpf40aQ9R1C7 Gbe1-201ENSMUST00000023393 2846 ntAPPRIS ALT2 TSL 5 BASIC18.41■□□□□ 0.54
Prpf40aQ9R1C7 Ppp4r3a-201ENSMUST00000048305 4516 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Prpf40aQ9R1C7 Gm45412-201ENSMUST00000210217 2275 ntBASIC18.4■□□□□ 0.54
Prpf40aQ9R1C7 Mmp23-201ENSMUST00000030937 1434 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Prpf40aQ9R1C7 Faap20-201ENSMUST00000097747 1479 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
Prpf40aQ9R1C7 Irx4-202ENSMUST00000176684 2384 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
Prpf40aQ9R1C7 Nsmf-203ENSMUST00000100334 2957 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Prpf40aQ9R1C7 Shisa7-201ENSMUST00000066041 6006 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
Prpf40aQ9R1C7 Antxr2-202ENSMUST00000199088 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
Prpf40aQ9R1C7 H6pd-201ENSMUST00000030830 4745 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
Prpf40aQ9R1C7 Lrrtm1-202ENSMUST00000159616 2541 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Prpf40aQ9R1C7 Syt8-202ENSMUST00000105976 1289 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
Prpf40aQ9R1C7 Gm13216-201ENSMUST00000117145 591 ntBASIC18.4■□□□□ 0.54
Prpf40aQ9R1C7 Gm15565-201ENSMUST00000118890 427 ntBASIC18.4■□□□□ 0.54
Prpf40aQ9R1C7 Pdcd5-202ENSMUST00000120714 767 ntTSL 3 BASIC18.4■□□□□ 0.54
Prpf40aQ9R1C7 Syt8-205ENSMUST00000122393 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
Prpf40aQ9R1C7 Ptf1aos-201ENSMUST00000122978 916 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Prpf40aQ9R1C7 Gm20403-201ENSMUST00000173803 372 ntAPPRIS P1 BASIC18.4■□□□□ 0.54
Prpf40aQ9R1C7 Pigf-201ENSMUST00000024957 988 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Prpf40aQ9R1C7 Ripply2-201ENSMUST00000058846 503 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Prpf40aQ9R1C7 Wipi2-201ENSMUST00000036872 5171 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Prpf40aQ9R1C7 2810408A11Rik-203ENSMUST00000102580 1640 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
Prpf40aQ9R1C7 Coq8b-202ENSMUST00000108378 2276 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Prpf40aQ9R1C7 Jade2-202ENSMUST00000109090 6230 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
Prpf40aQ9R1C7 Zfp142-201ENSMUST00000027315 6480 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
Prpf40aQ9R1C7 Met-203ENSMUST00000115443 6809 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
Prpf40aQ9R1C7 Tmem132c-201ENSMUST00000119026 5134 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Prpf40aQ9R1C7 A930029G22Rik-201ENSMUST00000181032 1710 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Retrieved 100 of 76,532 protein–RNA pairs in 20.2 ms