Protein–RNA interactions for Protein: Q9ERP3

Trim54, Tripartite motif-containing protein 54, mousemouse

Predictions only

Length 366 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim54Q9ERP3 Crhbp-201ENSMUST00000045583 1701 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Trim54Q9ERP3 Dhx32-203ENSMUST00000106139 2233 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Trim54Q9ERP3 Rilpl1-201ENSMUST00000062153 2249 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Trim54Q9ERP3 Cyb561d2-201ENSMUST00000041459 1786 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Trim54Q9ERP3 Prkcz-203ENSMUST00000105624 694 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Trim54Q9ERP3 Sytl3-204ENSMUST00000159880 1296 ntTSL 5 BASIC18.13■□□□□ 0.49
Trim54Q9ERP3 Mpst-202ENSMUST00000167140 1279 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
Trim54Q9ERP3 Gm26887-201ENSMUST00000181282 547 ntTSL 5 BASIC18.13■□□□□ 0.49
Trim54Q9ERP3 Exosc5-201ENSMUST00000079634 1020 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Trim54Q9ERP3 2810468N07Rik-201ENSMUST00000163493 1349 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Trim54Q9ERP3 5830415G21Rik-201ENSMUST00000192543 1332 ntBASIC18.13■□□□□ 0.49
Trim54Q9ERP3 Sars2-201ENSMUST00000094632 1868 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Trim54Q9ERP3 Rpl3l-202ENSMUST00000170239 1375 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
Trim54Q9ERP3 H2-DMb1-201ENSMUST00000114232 1404 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Trim54Q9ERP3 Dcps-202ENSMUST00000119847 1445 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Trim54Q9ERP3 Ube2z-201ENSMUST00000100528 3997 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Trim54Q9ERP3 Pcolce-202ENSMUST00000054564 1585 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
Trim54Q9ERP3 Ptprs-201ENSMUST00000067538 6855 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Trim54Q9ERP3 Ccdc126-201ENSMUST00000055559 2351 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Trim54Q9ERP3 Insm1-201ENSMUST00000089257 3100 ntAPPRIS P1 BASIC18.12■□□□□ 0.49
Trim54Q9ERP3 Plekhf1-201ENSMUST00000098513 5263 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Trim54Q9ERP3 Retreg1-201ENSMUST00000022881 3248 ntTSL 5 BASIC18.12■□□□□ 0.49
Trim54Q9ERP3 Mark3-201ENSMUST00000075281 3321 ntAPPRIS P2 TSL 1 (best) BASIC18.12■□□□□ 0.49
Trim54Q9ERP3 Atp6v0b-208ENSMUST00000150204 935 ntTSL 5 BASIC18.12■□□□□ 0.49
Trim54Q9ERP3 Polr2m-202ENSMUST00000163972 2138 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Trim54Q9ERP3 Angptl8-201ENSMUST00000058777 865 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Trim54Q9ERP3 Tmem198-202ENSMUST00000113575 2185 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Trim54Q9ERP3 Fdps-203ENSMUST00000196709 1382 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
Trim54Q9ERP3 Por-201ENSMUST00000005651 2636 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Trim54Q9ERP3 Plekha7-210ENSMUST00000182834 5257 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Trim54Q9ERP3 Fjx1-201ENSMUST00000099678 3134 ntAPPRIS P1 BASIC18.12■□□□□ 0.49
Trim54Q9ERP3 Evc-202ENSMUST00000114148 2119 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
Trim54Q9ERP3 2610301B20Rik-201ENSMUST00000080517 2116 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
Trim54Q9ERP3 Best2-203ENSMUST00000209421 2212 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Trim54Q9ERP3 Fam171a1-204ENSMUST00000115099 4149 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
Trim54Q9ERP3 Rbm11-202ENSMUST00000114249 2750 ntAPPRIS ALT2 TSL 5 BASIC18.11■□□□□ 0.49
Trim54Q9ERP3 Ciz1-201ENSMUST00000048964 2771 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
Trim54Q9ERP3 Lrrc14-204ENSMUST00000137649 2832 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Trim54Q9ERP3 Gnb1-203ENSMUST00000165335 3143 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Trim54Q9ERP3 2810459M11Rik-202ENSMUST00000165824 3331 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
Trim54Q9ERP3 Iqsec2-202ENSMUST00000112604 5967 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
Trim54Q9ERP3 Naa10-204ENSMUST00000114389 1031 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
Trim54Q9ERP3 Gm12359-202ENSMUST00000141696 713 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Trim54Q9ERP3 Gm12359-203ENSMUST00000153181 680 ntTSL 3 BASIC18.11■□□□□ 0.49
Trim54Q9ERP3 Gm17112-201ENSMUST00000163194 432 ntTSL 3 BASIC18.11■□□□□ 0.49
Trim54Q9ERP3 Bvht-202ENSMUST00000183087 588 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Trim54Q9ERP3 CAAA01066804.1-201ENSMUST00000217800 611 ntTSL 3 BASIC18.11■□□□□ 0.49
Trim54Q9ERP3 Gm8909-201ENSMUST00000040467 1357 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
Trim54Q9ERP3 Gprin1-202ENSMUST00000135343 4248 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Trim54Q9ERP3 Dleu2-208ENSMUST00000182768 1442 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Trim54Q9ERP3 Babam1-201ENSMUST00000002473 1433 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Trim54Q9ERP3 Klhdc8a-201ENSMUST00000046071 4269 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Trim54Q9ERP3 Rnls-201ENSMUST00000096114 1597 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Trim54Q9ERP3 Rbl2-201ENSMUST00000034091 4925 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
Trim54Q9ERP3 Gm21974-201ENSMUST00000126662 2037 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
Trim54Q9ERP3 Ap1m1-201ENSMUST00000003117 2084 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Trim54Q9ERP3 Mmp17-201ENSMUST00000031390 6422 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Trim54Q9ERP3 Mrpl39-201ENSMUST00000116584 2294 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Trim54Q9ERP3 Slc30a5-205ENSMUST00000225922 2722 ntAPPRIS ALT2 BASIC18.11■□□□□ 0.49
Trim54Q9ERP3 Zfp219-204ENSMUST00000226522 2804 ntAPPRIS P2 BASIC18.11■□□□□ 0.49
Trim54Q9ERP3 Osbpl1a-207ENSMUST00000121808 3030 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Trim54Q9ERP3 Nfib-206ENSMUST00000107248 3294 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Trim54Q9ERP3 Cobll1-205ENSMUST00000112431 5024 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
Trim54Q9ERP3 Fam135a-201ENSMUST00000027337 5536 ntAPPRIS P2 TSL 5 BASIC18.11■□□□□ 0.49
Trim54Q9ERP3 Ltbp4-202ENSMUST00000108369 5377 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
Trim54Q9ERP3 Ttc14-203ENSMUST00000117915 4913 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Trim54Q9ERP3 Sncaip-205ENSMUST00000178011 3433 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
Trim54Q9ERP3 Ncoa5-203ENSMUST00000122070 3117 ntTSL 5 BASIC18.1■□□□□ 0.49
Trim54Q9ERP3 Atxn7-201ENSMUST00000022257 6853 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Trim54Q9ERP3 Fam129c-208ENSMUST00000143662 2267 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
Trim54Q9ERP3 Ipo9-201ENSMUST00000041023 6247 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Trim54Q9ERP3 Pmepa1-201ENSMUST00000036248 4538 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Trim54Q9ERP3 Gm6190-201ENSMUST00000220683 1374 ntBASIC18.1■□□□□ 0.49
Trim54Q9ERP3 Trim24-201ENSMUST00000031859 4042 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
Trim54Q9ERP3 Hsd17b1-201ENSMUST00000019445 1339 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Trim54Q9ERP3 Pqlc1-208ENSMUST00000144468 1050 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Trim54Q9ERP3 Gm28402-201ENSMUST00000188574 373 ntTSL 3 BASIC18.1■□□□□ 0.49
Trim54Q9ERP3 Gm34391-201ENSMUST00000203706 907 ntBASIC18.1■□□□□ 0.49
Trim54Q9ERP3 Slc35e1-202ENSMUST00000152080 4383 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Trim54Q9ERP3 Ddx19a-201ENSMUST00000040416 2547 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Trim54Q9ERP3 Asb1-202ENSMUST00000086843 2490 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Trim54Q9ERP3 Il17rb-202ENSMUST00000122205 2094 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
Trim54Q9ERP3 Fbxo42-201ENSMUST00000030757 5934 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Trim54Q9ERP3 Gpr6-201ENSMUST00000061796 1786 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Trim54Q9ERP3 Agfg2-201ENSMUST00000031736 2893 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
Trim54Q9ERP3 Eps8-203ENSMUST00000111878 3560 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Trim54Q9ERP3 Tmem136-202ENSMUST00000213544 2463 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Trim54Q9ERP3 Atad3a-201ENSMUST00000030903 2413 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Trim54Q9ERP3 Ptpra-201ENSMUST00000028769 3227 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Trim54Q9ERP3 Mfsd13a-201ENSMUST00000086969 2278 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Trim54Q9ERP3 Npas3-201ENSMUST00000101432 5879 ntAPPRIS P2 TSL 1 (best) BASIC18.09■□□□□ 0.49
Trim54Q9ERP3 Amfr-201ENSMUST00000053766 3880 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Trim54Q9ERP3 Epsti1-202ENSMUST00000169978 1175 ntAPPRIS ALT2 TSL 5 BASIC18.09■□□□□ 0.49
Trim54Q9ERP3 2010010A06Rik-202ENSMUST00000186356 694 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Trim54Q9ERP3 Gm29103-201ENSMUST00000191034 598 ntTSL 5 BASIC18.09■□□□□ 0.49
Trim54Q9ERP3 Gm44930-202ENSMUST00000208733 689 ntTSL 5 BASIC18.09■□□□□ 0.49
Trim54Q9ERP3 Epsti1-203ENSMUST00000227903 1178 ntAPPRIS ALT2 BASIC18.09■□□□□ 0.49
Trim54Q9ERP3 Apba3-201ENSMUST00000057798 2106 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Trim54Q9ERP3 Cldn19-201ENSMUST00000084309 924 ntAPPRIS P4 TSL 1 (best) BASIC18.09■□□□□ 0.49
Trim54Q9ERP3 Acbd4-201ENSMUST00000024492 2075 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
Retrieved 100 of 76,532 protein–RNA pairs in 20.5 ms