Protein–RNA interactions for Protein: Q99K46

Usp11, Ubiquitin carboxyl-terminal hydrolase 11, mousemouse

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp11Q99K46 Fbxl15-201ENSMUST00000026256 1348 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Usp11Q99K46 A430078I02Rik-202ENSMUST00000154066 2233 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Usp11Q99K46 Zfp384-208ENSMUST00000112428 3132 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Usp11Q99K46 Chrna4-201ENSMUST00000067120 4565 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Usp11Q99K46 Aspscr1-204ENSMUST00000106159 1615 ntTSL 5 BASIC17.69■□□□□ 0.42
Usp11Q99K46 Mrpl9-201ENSMUST00000029786 1612 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Usp11Q99K46 Mmp14-201ENSMUST00000089688 2596 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Usp11Q99K46 Tax1bp3-201ENSMUST00000040687 1523 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Usp11Q99K46 Ccdc184-201ENSMUST00000031914 2329 ntAPPRIS P1 BASIC17.69■□□□□ 0.42
Usp11Q99K46 Epm2a-201ENSMUST00000069106 3287 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Usp11Q99K46 Epo-203ENSMUST00000111039 706 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Usp11Q99K46 Tlx1os-201ENSMUST00000173437 620 ntTSL 3 BASIC17.69■□□□□ 0.42
Usp11Q99K46 Impa1-204ENSMUST00000191670 1100 ntTSL 2 BASIC17.69■□□□□ 0.42
Usp11Q99K46 Gm21814-202ENSMUST00000203277 873 ntBASIC17.69■□□□□ 0.42
Usp11Q99K46 Odf3b-204ENSMUST00000227834 930 ntBASIC17.69■□□□□ 0.42
Usp11Q99K46 Fam167b-201ENSMUST00000052835 913 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Usp11Q99K46 Zfp281-201ENSMUST00000047734 4933 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Usp11Q99K46 St8sia6-201ENSMUST00000003509 7618 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Usp11Q99K46 AW011738-201ENSMUST00000105140 1848 ntAPPRIS P1 BASIC17.69■□□□□ 0.42
Usp11Q99K46 Ing1-202ENSMUST00000209565 1971 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Usp11Q99K46 Zdhhc18-201ENSMUST00000084238 4580 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
Usp11Q99K46 Wdr41-205ENSMUST00000160801 3062 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
Usp11Q99K46 Wdr41-201ENSMUST00000056512 3063 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Usp11Q99K46 Aig1-205ENSMUST00000162610 1554 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Usp11Q99K46 Pacs1-201ENSMUST00000025786 4339 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Usp11Q99K46 Snph-203ENSMUST00000109875 4910 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
Usp11Q99K46 Evpl-201ENSMUST00000037007 6384 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
Usp11Q99K46 Nek2-201ENSMUST00000027931 3227 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Usp11Q99K46 Mycl-201ENSMUST00000030407 3501 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Usp11Q99K46 Fhl1-203ENSMUST00000114769 2770 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Usp11Q99K46 D330023K18Rik-201ENSMUST00000133550 920 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Usp11Q99K46 D330020A13Rik-201ENSMUST00000181956 1069 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
Usp11Q99K46 Dleu2-208ENSMUST00000182768 1442 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Usp11Q99K46 Gm42738-201ENSMUST00000201813 439 ntTSL 3 BASIC17.68■□□□□ 0.42
Usp11Q99K46 Tm2d1-201ENSMUST00000030292 952 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Usp11Q99K46 Ntpcr-201ENSMUST00000034313 1155 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Usp11Q99K46 Espn-202ENSMUST00000049305 1142 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Usp11Q99K46 Guca1a-201ENSMUST00000059348 871 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Usp11Q99K46 Nsmce3-201ENSMUST00000094331 5946 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
Usp11Q99K46 Pde8b-208ENSMUST00000162292 4235 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
Usp11Q99K46 Six3os1-212ENSMUST00000177220 5601 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Usp11Q99K46 Ift74-201ENSMUST00000030311 2139 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
Usp11Q99K46 Nr1h2-201ENSMUST00000073488 1999 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
Usp11Q99K46 Elac2-203ENSMUST00000108697 2612 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
Usp11Q99K46 2210016L21Rik-201ENSMUST00000031538 2607 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Usp11Q99K46 Gm28265-201ENSMUST00000188201 2319 ntBASIC17.67■□□□□ 0.42
Usp11Q99K46 Rassf7-201ENSMUST00000046890 1525 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Usp11Q99K46 Flt1-202ENSMUST00000031653 6895 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Usp11Q99K46 Mycn-201ENSMUST00000043396 2674 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Usp11Q99K46 2900052L18Rik-201ENSMUST00000139014 1588 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Usp11Q99K46 E230001N04Rik-202ENSMUST00000181029 2091 ntBASIC17.67■□□□□ 0.42
Usp11Q99K46 Eml5-210ENSMUST00000223282 7595 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
Usp11Q99K46 Myo15b-202ENSMUST00000093911 9340 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
Usp11Q99K46 Josd2-206ENSMUST00000121922 684 ntTSL 5 BASIC17.67■□□□□ 0.42
Usp11Q99K46 Gm13816-201ENSMUST00000152230 715 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Usp11Q99K46 Gm3264-202ENSMUST00000166776 882 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
Usp11Q99K46 Gm26829-201ENSMUST00000180581 934 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Usp11Q99K46 Klf13-202ENSMUST00000183817 599 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Usp11Q99K46 Eloc-203ENSMUST00000185771 742 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
Usp11Q99K46 Gm37055-201ENSMUST00000191866 133 ntBASIC17.67■□□□□ 0.42
Usp11Q99K46 Gm9484-201ENSMUST00000195892 1159 ntBASIC17.67■□□□□ 0.42
Usp11Q99K46 Arhgef4-208ENSMUST00000211073 171 ntBASIC17.67■□□□□ 0.42
Usp11Q99K46 4930554C24Rik-202ENSMUST00000216019 1159 ntTSL 5 BASIC17.67■□□□□ 0.42
Usp11Q99K46 Pomc-204ENSMUST00000219543 1043 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Usp11Q99K46 Tmem233-201ENSMUST00000111997 2477 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
Usp11Q99K46 Scamp3-201ENSMUST00000029684 1489 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
Usp11Q99K46 Hace1-201ENSMUST00000037044 3785 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Usp11Q99K46 Pld2-203ENSMUST00000108557 3655 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Usp11Q99K46 Map1s-201ENSMUST00000019405 3314 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Usp11Q99K46 Nfe2l3-201ENSMUST00000005103 2544 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Usp11Q99K46 Mapk8ip3-201ENSMUST00000088345 5543 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
Usp11Q99K46 Polr3gl-201ENSMUST00000091924 1427 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Usp11Q99K46 Nkx2-2-203ENSMUST00000109970 1053 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Usp11Q99K46 5430402O13Rik-201ENSMUST00000126537 869 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Usp11Q99K46 Cebpg-201ENSMUST00000070191 914 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
Usp11Q99K46 Nme2-202ENSMUST00000072566 734 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Usp11Q99K46 Vps37d-202ENSMUST00000076203 1286 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Usp11Q99K46 Rbmxl1-201ENSMUST00000049245 1695 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Usp11Q99K46 Yipf2-204ENSMUST00000213809 1883 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Usp11Q99K46 Atf6b-202ENSMUST00000173984 2315 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
Usp11Q99K46 B3galnt2-204ENSMUST00000221300 2397 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Usp11Q99K46 Rsph3a-201ENSMUST00000097423 2189 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Usp11Q99K46 Mipep-201ENSMUST00000063562 3015 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Usp11Q99K46 Proc-201ENSMUST00000171765 1566 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
Usp11Q99K46 Gm43272-201ENSMUST00000200599 1584 ntBASIC17.66■□□□□ 0.42
Usp11Q99K46 Zbtb22-201ENSMUST00000053429 2611 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Usp11Q99K46 Tekt1-203ENSMUST00000108503 1397 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Usp11Q99K46 Kcnq2-201ENSMUST00000016491 3067 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Usp11Q99K46 Stk39-201ENSMUST00000102715 3536 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Usp11Q99K46 Prpsap1-201ENSMUST00000106391 1841 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Usp11Q99K46 Aida-206ENSMUST00000193625 1810 ntTSL 3 BASIC17.65■□□□□ 0.42
Usp11Q99K46 Efnb3-201ENSMUST00000004036 3183 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Usp11Q99K46 Serinc2-201ENSMUST00000105996 1878 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
Usp11Q99K46 Aipl1-201ENSMUST00000048207 2309 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Usp11Q99K46 Zpbp2-205ENSMUST00000107513 1240 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
Usp11Q99K46 C1qtnf5-202ENSMUST00000114816 1259 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Usp11Q99K46 Atf7ip2-204ENSMUST00000119023 1048 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Usp11Q99K46 Gm17098-201ENSMUST00000166507 628 ntTSL 5 BASIC17.65■□□□□ 0.42
Usp11Q99K46 2310033P09Rik-201ENSMUST00000020719 1285 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Usp11Q99K46 Tpsg1-201ENSMUST00000024999 1186 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Retrieved 100 of 76,532 protein–RNA pairs in 27.5 ms