Protein–RNA interactions for Protein: Q8C0E3

Trim47, Tripartite motif-containing protein 47, mousemouse

Predictions only

Length 641 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim47Q8C0E3 Cap1-202ENSMUST00000106255 2737 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Trim47Q8C0E3 Rbbp7-203ENSMUST00000112327 1862 ntTSL 5 BASIC18.58■□□□□ 0.57
Trim47Q8C0E3 Zkscan6-202ENSMUST00000071465 2270 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Trim47Q8C0E3 Tmem254b-201ENSMUST00000022418 1447 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Trim47Q8C0E3 Mark3-201ENSMUST00000075281 3321 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.57
Trim47Q8C0E3 Rab40c-207ENSMUST00000167626 2506 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Trim47Q8C0E3 Nin-203ENSMUST00000095666 7183 ntAPPRIS ALT2 TSL 5 BASIC18.58■□□□□ 0.57
Trim47Q8C0E3 A730015C16Rik-201ENSMUST00000164855 1221 ntAPPRIS P1 BASIC18.58■□□□□ 0.56
Trim47Q8C0E3 1700022H01Rik-201ENSMUST00000219142 387 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
Trim47Q8C0E3 Mrpl36-203ENSMUST00000222030 680 ntAPPRIS P1 TSL 3 BASIC18.58■□□□□ 0.56
Trim47Q8C0E3 AC130711.1-201ENSMUST00000224277 906 ntAPPRIS P1 BASIC18.58■□□□□ 0.56
Trim47Q8C0E3 Gfra4-202ENSMUST00000066958 783 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
Trim47Q8C0E3 Sort1-201ENSMUST00000102632 6796 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.56
Trim47Q8C0E3 Cxcl14-202ENSMUST00000224801 1467 ntBASIC18.58■□□□□ 0.56
Trim47Q8C0E3 Dock9-202ENSMUST00000100299 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
Trim47Q8C0E3 Wac-207ENSMUST00000167020 5208 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
Trim47Q8C0E3 Mpped2-202ENSMUST00000111063 2848 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Trim47Q8C0E3 Tnfrsf13c-201ENSMUST00000089161 1906 ntAPPRIS P2 TSL 1 (best) BASIC18.57■□□□□ 0.56
Trim47Q8C0E3 Nit1-202ENSMUST00000111295 1335 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
Trim47Q8C0E3 Smad1-202ENSMUST00000066091 3099 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Trim47Q8C0E3 Sart1-201ENSMUST00000044207 5091 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Trim47Q8C0E3 0610010K14Rik-207ENSMUST00000108577 659 ntTSL 5 BASIC18.57■□□□□ 0.56
Trim47Q8C0E3 Mir142hg-201ENSMUST00000123700 269 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
Trim47Q8C0E3 Flg-207ENSMUST00000180293 768 ntAPPRIS ALT2 BASIC18.57■□□□□ 0.56
Trim47Q8C0E3 Imp3-201ENSMUST00000034827 924 ntAPPRIS P1 BASIC18.57■□□□□ 0.56
Trim47Q8C0E3 Stk39-201ENSMUST00000102715 3536 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Trim47Q8C0E3 Zfp655-206ENSMUST00000200039 1765 ntAPPRIS ALT1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Trim47Q8C0E3 Msmo1-201ENSMUST00000034015 2044 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Trim47Q8C0E3 Fosl1-201ENSMUST00000025850 1707 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Trim47Q8C0E3 Ino80e-203ENSMUST00000106343 1973 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Trim47Q8C0E3 Dusp9-201ENSMUST00000019701 2722 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Trim47Q8C0E3 Fam46c-201ENSMUST00000061455 5640 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Trim47Q8C0E3 Arhgef17-204ENSMUST00000209041 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
Trim47Q8C0E3 Dmap1-201ENSMUST00000102687 1566 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Trim47Q8C0E3 4930474H06Rik-201ENSMUST00000132822 1590 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Trim47Q8C0E3 Nfix-204ENSMUST00000109764 5476 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Trim47Q8C0E3 Whrn-205ENSMUST00000095038 2665 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Trim47Q8C0E3 Pyy-201ENSMUST00000017455 555 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
Trim47Q8C0E3 Snhg4-201ENSMUST00000181664 1190 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Trim47Q8C0E3 Gm27704-201ENSMUST00000185094 107 ntBASIC18.56■□□□□ 0.56
Trim47Q8C0E3 Gm10459-201ENSMUST00000202708 1155 ntBASIC18.56■□□□□ 0.56
Trim47Q8C0E3 4933412L11Rik-201ENSMUST00000203702 1044 ntBASIC18.56■□□□□ 0.56
Trim47Q8C0E3 Rpl13a-204ENSMUST00000209711 495 ntTSL 3 BASIC18.56■□□□□ 0.56
Trim47Q8C0E3 Ak6-201ENSMUST00000022135 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Trim47Q8C0E3 Rad51d-203ENSMUST00000092844 1228 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Trim47Q8C0E3 Nr1h3-202ENSMUST00000111354 1738 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Trim47Q8C0E3 Acss2-202ENSMUST00000065973 2876 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Trim47Q8C0E3 Zufsp-202ENSMUST00000218055 2180 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Trim47Q8C0E3 Zxdc-203ENSMUST00000113539 4864 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
Trim47Q8C0E3 Farp1-201ENSMUST00000026635 4885 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
Trim47Q8C0E3 Mcl1-201ENSMUST00000037947 3418 ntAPPRIS P2 TSL 1 (best) BASIC18.56■□□□□ 0.56
Trim47Q8C0E3 Smpdl3b-201ENSMUST00000030709 2006 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Trim47Q8C0E3 Relb-201ENSMUST00000049912 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
Trim47Q8C0E3 Zpbp2-203ENSMUST00000107509 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
Trim47Q8C0E3 4933427J07Rik-201ENSMUST00000156275 1533 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Trim47Q8C0E3 Sytl3-201ENSMUST00000097430 2100 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Trim47Q8C0E3 Gm15635-204ENSMUST00000208024 2539 ntBASIC18.55■□□□□ 0.56
Trim47Q8C0E3 Ndufb11-201ENSMUST00000116621 908 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Trim47Q8C0E3 Dohh-202ENSMUST00000121047 946 ntTSL 2 BASIC18.55■□□□□ 0.56
Trim47Q8C0E3 Gm11950-201ENSMUST00000121615 838 ntBASIC18.55■□□□□ 0.56
Trim47Q8C0E3 Gm13524-201ENSMUST00000125869 662 ntTSL 3 BASIC18.55■□□□□ 0.56
Trim47Q8C0E3 Znhit2-201ENSMUST00000162726 1281 ntAPPRIS P1 BASIC18.55■□□□□ 0.56
Trim47Q8C0E3 Bvht-202ENSMUST00000183087 588 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Trim47Q8C0E3 Gm19935-201ENSMUST00000209208 979 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Trim47Q8C0E3 Nkx2-6-201ENSMUST00000062437 1134 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Trim47Q8C0E3 Capzb-202ENSMUST00000042675 1604 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Trim47Q8C0E3 Gmcl1-201ENSMUST00000001185 2949 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Trim47Q8C0E3 Itsn1-205ENSMUST00000113996 5147 ntTSL 5 BASIC18.55■□□□□ 0.56
Trim47Q8C0E3 Cdca7-201ENSMUST00000102691 2424 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Trim47Q8C0E3 Rnf128-201ENSMUST00000113026 2750 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Trim47Q8C0E3 Crebbp-201ENSMUST00000023165 10820 ntAPPRIS P2 TSL 1 (best) BASIC18.54■□□□□ 0.56
Trim47Q8C0E3 Fst-201ENSMUST00000022287 2556 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Trim47Q8C0E3 4930455H04Rik-201ENSMUST00000117592 1341 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Trim47Q8C0E3 Gfra2-202ENSMUST00000227633 1480 ntBASIC18.54■□□□□ 0.56
Trim47Q8C0E3 Npm1-201ENSMUST00000075641 1633 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Trim47Q8C0E3 Tmsb10-202ENSMUST00000114049 690 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Trim47Q8C0E3 Gm7284-201ENSMUST00000131667 944 ntBASIC18.54■□□□□ 0.56
Trim47Q8C0E3 Srgn-205ENSMUST00000162161 694 ntAPPRIS P1 TSL 3 BASIC18.54■□□□□ 0.56
Trim47Q8C0E3 Mrps12-204ENSMUST00000171183 883 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
Trim47Q8C0E3 Cd70-201ENSMUST00000019633 842 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Trim47Q8C0E3 Odf3b-201ENSMUST00000049968 1040 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Trim47Q8C0E3 Exosc5-201ENSMUST00000079634 1020 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Trim47Q8C0E3 Gm10819-201ENSMUST00000099988 561 ntBASIC18.54■□□□□ 0.56
Trim47Q8C0E3 Trim54-202ENSMUST00000202769 1408 ntAPPRIS ALT1 TSL 5 BASIC18.54■□□□□ 0.56
Trim47Q8C0E3 Mterf1a-202ENSMUST00000117463 2413 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Trim47Q8C0E3 Nsmf-201ENSMUST00000006646 2922 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
Trim47Q8C0E3 Synm-205ENSMUST00000208815 2697 ntAPPRIS ALT2 TSL 5 BASIC18.54■□□□□ 0.56
Trim47Q8C0E3 Vgf-204ENSMUST00000190827 2834 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Trim47Q8C0E3 Zkscan4-202ENSMUST00000225845 1506 ntBASIC18.54■□□□□ 0.56
Trim47Q8C0E3 Lrrc36-206ENSMUST00000216765 2301 ntAPPRIS ALT2 TSL 5 BASIC18.54■□□□□ 0.56
Trim47Q8C0E3 Gm26526-201ENSMUST00000181075 2927 ntTSL 5 BASIC18.53■□□□□ 0.56
Trim47Q8C0E3 Cldn7-201ENSMUST00000018713 1335 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Trim47Q8C0E3 Bnip2-203ENSMUST00000117450 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
Trim47Q8C0E3 Gm26892-201ENSMUST00000181695 1636 ntTSL 5 BASIC18.53■□□□□ 0.56
Trim47Q8C0E3 Arpc1a-201ENSMUST00000031625 1632 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Trim47Q8C0E3 Pou2f2-205ENSMUST00000108417 1937 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Trim47Q8C0E3 Atf4-201ENSMUST00000109605 1724 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Trim47Q8C0E3 Fbxo6-208ENSMUST00000168503 1240 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
Trim47Q8C0E3 Lmbrd1-202ENSMUST00000186096 688 ntTSL 2 BASIC18.53■□□□□ 0.56
Trim47Q8C0E3 Sar1a-201ENSMUST00000020285 2613 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Retrieved 100 of 76,532 protein–RNA pairs in 48.1 ms