Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Chchd2-ps-201ENSMUST00000117487 462 ntBASIC22.97■■□□□ 1.27
Usp40Q8BWR4 Gm13884-201ENSMUST00000118103 829 ntBASIC22.97■■□□□ 1.27
Usp40Q8BWR4 Zscan10-204ENSMUST00000118369 1006 ntTSL 1 (best) BASIC22.97■■□□□ 1.27
Usp40Q8BWR4 Rpl19-ps10-201ENSMUST00000205555 330 ntBASIC22.97■■□□□ 1.27
Usp40Q8BWR4 Lmo1-203ENSMUST00000208136 772 ntTSL 2 BASIC22.97■■□□□ 1.27
Usp40Q8BWR4 AC108846.1-201ENSMUST00000214531 513 ntBASIC22.97■■□□□ 1.27
Usp40Q8BWR4 AC107711.5-202ENSMUST00000226429 702 ntBASIC22.97■■□□□ 1.27
Usp40Q8BWR4 AL731706.1-201ENSMUST00000227806 944 ntAPPRIS ALT2 BASIC22.97■■□□□ 1.27
Usp40Q8BWR4 Nmu-201ENSMUST00000031146 828 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
Usp40Q8BWR4 Lcmt2-201ENSMUST00000099486 2047 ntTSL 1 (best) BASIC22.97■■□□□ 1.27
Usp40Q8BWR4 Cep83-201ENSMUST00000020212 3639 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
Usp40Q8BWR4 Acot1-201ENSMUST00000168120 2272 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
Usp40Q8BWR4 Tmem176a-201ENSMUST00000101426 1540 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
Usp40Q8BWR4 Rusc1-203ENSMUST00000166687 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC22.96■■□□□ 1.27
Usp40Q8BWR4 Snip1-201ENSMUST00000052183 2345 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
Usp40Q8BWR4 Rasgef1b-205ENSMUST00000161148 2430 ntTSL 1 (best) BASIC22.96■■□□□ 1.27
Usp40Q8BWR4 Hnrnpa1l2-ps-201ENSMUST00000129154 964 ntBASIC22.96■■□□□ 1.27
Usp40Q8BWR4 Etv5-201ENSMUST00000079601 3975 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
Usp40Q8BWR4 Abhd10-201ENSMUST00000066983 2848 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
Usp40Q8BWR4 Apbb1-209ENSMUST00000188368 1970 ntTSL 5 BASIC22.96■■□□□ 1.27
Usp40Q8BWR4 A130010J15Rik-201ENSMUST00000110831 2257 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
Usp40Q8BWR4 Mrpl39-201ENSMUST00000116584 2294 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
Usp40Q8BWR4 Gm10300-201ENSMUST00000094662 2296 ntAPPRIS P1 BASIC22.96■■□□□ 1.27
Usp40Q8BWR4 Plekhf2-201ENSMUST00000054776 2977 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.27
Usp40Q8BWR4 Kansl1l-201ENSMUST00000068168 4459 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.26
Usp40Q8BWR4 Htr6-202ENSMUST00000105802 2341 ntAPPRIS P1 TSL 5 BASIC22.95■■□□□ 1.26
Usp40Q8BWR4 0610009B22Rik-202ENSMUST00000109098 892 ntAPPRIS P1 TSL 3 BASIC22.95■■□□□ 1.26
Usp40Q8BWR4 Ppp1r3f-201ENSMUST00000115742 3066 ntAPPRIS P3 TSL 1 (best) BASIC22.95■■□□□ 1.26
Usp40Q8BWR4 Gm11620-201ENSMUST00000118770 1845 ntBASIC22.95■■□□□ 1.26
Usp40Q8BWR4 Uba52-203ENSMUST00000125184 711 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.26
Usp40Q8BWR4 2410004I01Rik-201ENSMUST00000138424 1187 ntTSL 1 (best) BASIC22.95■■□□□ 1.26
Usp40Q8BWR4 Cgrrf1-204ENSMUST00000140114 419 ntTSL 1 (best) BASIC22.95■■□□□ 1.26
Usp40Q8BWR4 Foxf1-201ENSMUST00000181504 2415 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.26
Usp40Q8BWR4 Mir8098-201ENSMUST00000184011 137 ntBASIC22.95■■□□□ 1.26
Usp40Q8BWR4 D730003I15Rik-202ENSMUST00000194375 1667 ntBASIC22.95■■□□□ 1.26
Usp40Q8BWR4 Emd-201ENSMUST00000002029 1595 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.26
Usp40Q8BWR4 D030044L04Rik-201ENSMUST00000204220 1291 ntTSL 1 (best) BASIC22.95■■□□□ 1.26
Usp40Q8BWR4 Rhoc-201ENSMUST00000002303 1202 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.26
Usp40Q8BWR4 Mrps18a-201ENSMUST00000024763 884 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.26
Usp40Q8BWR4 Fosl1-201ENSMUST00000025850 1707 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.26
Usp40Q8BWR4 Ppme1-201ENSMUST00000032963 2772 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.26
Usp40Q8BWR4 Nadk2-201ENSMUST00000067760 3731 ntAPPRIS P5 TSL 5 BASIC22.95■■□□□ 1.26
Usp40Q8BWR4 Ccdc149-201ENSMUST00000059428 3295 ntAPPRIS P1 TSL 5 BASIC22.95■■□□□ 1.26
Usp40Q8BWR4 Haus8-201ENSMUST00000035960 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC22.94■■□□□ 1.26
Usp40Q8BWR4 Tulp1-202ENSMUST00000114794 1738 ntTSL 1 (best) BASIC22.94■■□□□ 1.26
Usp40Q8BWR4 Tcf7l2-203ENSMUST00000111646 2839 ntTSL 1 (best) BASIC22.94■■□□□ 1.26
Usp40Q8BWR4 Oraov1-203ENSMUST00000105895 1016 ntAPPRIS ALT2 TSL 2 BASIC22.94■■□□□ 1.26
Usp40Q8BWR4 Zfp133-ps-202ENSMUST00000124788 1079 ntTSL 1 (best) BASIC22.94■■□□□ 1.26
Usp40Q8BWR4 Rprl3-201ENSMUST00000157400 290 ntBASIC22.94■■□□□ 1.26
Usp40Q8BWR4 4931422A03Rik-201ENSMUST00000056170 1037 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
Usp40Q8BWR4 Dgcr6-202ENSMUST00000076757 894 ntTSL 5 BASIC22.94■■□□□ 1.26
Usp40Q8BWR4 Rpl27-201ENSMUST00000077856 614 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
Usp40Q8BWR4 Olfr601-201ENSMUST00000080474 990 ntAPPRIS P1 BASIC22.94■■□□□ 1.26
Usp40Q8BWR4 Pla2g12b-201ENSMUST00000009790 1091 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
Usp40Q8BWR4 Satb1-211ENSMUST00000152830 5993 ntAPPRIS P2 TSL 2 BASIC22.94■■□□□ 1.26
Usp40Q8BWR4 Ccdc174-201ENSMUST00000037783 1752 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
Usp40Q8BWR4 Fgfr2-211ENSMUST00000120187 4311 ntAPPRIS ALT2 TSL 1 (best) BASIC22.94■■□□□ 1.26
Usp40Q8BWR4 Hpca-203ENSMUST00000116442 1568 ntAPPRIS P1 TSL 3 BASIC22.93■■□□□ 1.26
Usp40Q8BWR4 Hoxaas2-202ENSMUST00000155922 1567 ntTSL 1 (best) BASIC22.93■■□□□ 1.26
Usp40Q8BWR4 4833418N02Rik-202ENSMUST00000146560 1495 ntTSL 1 (best) BASIC22.93■■□□□ 1.26
Usp40Q8BWR4 Prdm5-201ENSMUST00000031973 1488 ntTSL 1 (best) BASIC22.93■■□□□ 1.26
Usp40Q8BWR4 Osbpl1a-203ENSMUST00000118313 2893 ntTSL 1 (best) BASIC22.93■■□□□ 1.26
Usp40Q8BWR4 1110065P20Rik-204ENSMUST00000163946 762 ntTSL 2 BASIC22.93■■□□□ 1.26
Usp40Q8BWR4 Il17b-201ENSMUST00000025471 692 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.26
Usp40Q8BWR4 Prdx6-201ENSMUST00000051925 959 ntTSL 2 BASIC22.93■■□□□ 1.26
Usp40Q8BWR4 Nrros-203ENSMUST00000115165 2389 ntAPPRIS ALT2 TSL 1 (best) BASIC22.93■■□□□ 1.26
Usp40Q8BWR4 Ankrd22-201ENSMUST00000025686 1766 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.26
Usp40Q8BWR4 Plekhm2-202ENSMUST00000084203 4136 ntAPPRIS P3 TSL 5 BASIC22.93■■□□□ 1.26
Usp40Q8BWR4 Ift74-202ENSMUST00000107104 1713 ntTSL 2 BASIC22.93■■□□□ 1.26
Usp40Q8BWR4 Hmbs-201ENSMUST00000077353 1605 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.26
Usp40Q8BWR4 2210016L21Rik-201ENSMUST00000031538 2607 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.26
Usp40Q8BWR4 Rara-204ENSMUST00000107475 2469 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
Usp40Q8BWR4 Cnksr1-201ENSMUST00000030645 2468 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
Usp40Q8BWR4 Chtf8-206ENSMUST00000177068 2931 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
Usp40Q8BWR4 Tnfrsf13c-201ENSMUST00000089161 1906 ntAPPRIS P2 TSL 1 (best) BASIC22.92■■□□□ 1.26
Usp40Q8BWR4 Rhbdd3-202ENSMUST00000101610 2333 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
Usp40Q8BWR4 Lpgat1-202ENSMUST00000110856 2792 ntTSL 1 (best) BASIC22.92■■□□□ 1.26
Usp40Q8BWR4 Klc1-202ENSMUST00000118471 2272 ntTSL 1 (best) BASIC22.92■■□□□ 1.26
Usp40Q8BWR4 Ebf3-201ENSMUST00000033378 4838 ntAPPRIS P3 TSL 1 (best) BASIC22.92■■□□□ 1.26
Usp40Q8BWR4 A430057M04Rik-202ENSMUST00000170150 2176 ntTSL 1 (best) BASIC22.92■■□□□ 1.26
Usp40Q8BWR4 Pisd-201ENSMUST00000061895 2183 ntAPPRIS P3 TSL 1 (best) BASIC22.92■■□□□ 1.26
Usp40Q8BWR4 Gm12644-201ENSMUST00000119935 606 ntBASIC22.92■■□□□ 1.26
Usp40Q8BWR4 Eapp-203ENSMUST00000160085 676 ntTSL 3 BASIC22.92■■□□□ 1.26
Usp40Q8BWR4 Proser2-201ENSMUST00000054254 2061 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
Usp40Q8BWR4 Itsn2-201ENSMUST00000062580 5987 ntAPPRIS P2 TSL 5 BASIC22.92■■□□□ 1.26
Usp40Q8BWR4 Smpd5-202ENSMUST00000163991 1823 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
Usp40Q8BWR4 Fezf1-201ENSMUST00000031709 2409 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
Usp40Q8BWR4 Cend1-201ENSMUST00000084436 1672 ntAPPRIS P1 TSL 5 BASIC22.91■■□□□ 1.26
Usp40Q8BWR4 Gm11452-201ENSMUST00000122376 690 ntBASIC22.91■■□□□ 1.26
Usp40Q8BWR4 AC159301.1-201ENSMUST00000225130 1182 ntBASIC22.91■■□□□ 1.26
Usp40Q8BWR4 Tril-201ENSMUST00000127748 5363 ntAPPRIS P1 BASIC22.91■■□□□ 1.26
Usp40Q8BWR4 Jdp2-202ENSMUST00000171754 1559 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
Usp40Q8BWR4 Sec14l1-203ENSMUST00000103026 2589 ntAPPRIS ALT2 TSL 5 BASIC22.91■■□□□ 1.26
Usp40Q8BWR4 Vav2-201ENSMUST00000056176 5221 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
Usp40Q8BWR4 Chpt1-203ENSMUST00000117440 4863 ntAPPRIS ALT2 TSL 5 BASIC22.9■■□□□ 1.26
Usp40Q8BWR4 Glra1-202ENSMUST00000102716 2390 ntAPPRIS P3 TSL 1 (best) BASIC22.9■■□□□ 1.26
Usp40Q8BWR4 Nfs1-202ENSMUST00000109600 709 ntTSL 1 (best) BASIC22.9■■□□□ 1.26
Usp40Q8BWR4 Gm12536-201ENSMUST00000129102 358 ntTSL 2 BASIC22.9■■□□□ 1.26
Usp40Q8BWR4 Gm27867-201ENSMUST00000184778 125 ntBASIC22.9■■□□□ 1.26
Usp40Q8BWR4 Smim22-208ENSMUST00000185147 399 ntAPPRIS ALT2 TSL 2 BASIC22.9■■□□□ 1.26
Retrieved 100 of 76,532 protein–RNA pairs in 38.4 ms