Protein–RNA interactions for Protein: Q78JW9

Ubfd1, Ubiquitin domain-containing protein UBFD1, mousemouse

Predictions only

Length 368 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ubfd1Q78JW9 Gm27357-201ENSMUST00000183754 135 ntBASIC16.33■□□□□ 0.2
Ubfd1Q78JW9 Gm18421-201ENSMUST00000204122 625 ntBASIC16.33■□□□□ 0.2
Ubfd1Q78JW9 Gm18669-201ENSMUST00000216049 778 ntBASIC16.33■□□□□ 0.2
Ubfd1Q78JW9 AC107711.5-202ENSMUST00000226429 702 ntBASIC16.33■□□□□ 0.2
Ubfd1Q78JW9 Plpbp-202ENSMUST00000098851 1368 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Ubfd1Q78JW9 Cops6-201ENSMUST00000019638 1787 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.2
Ubfd1Q78JW9 AL590614.2-201ENSMUST00000225374 1937 ntBASIC16.33■□□□□ 0.2
Ubfd1Q78JW9 Gm26795-201ENSMUST00000180993 1952 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Ubfd1Q78JW9 Iqsec2-202ENSMUST00000112604 5967 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
Ubfd1Q78JW9 Slc30a5-205ENSMUST00000225922 2722 ntAPPRIS ALT2 BASIC16.32■□□□□ 0.2
Ubfd1Q78JW9 Armc10-202ENSMUST00000095495 2700 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Ubfd1Q78JW9 Zfp622-201ENSMUST00000061875 2802 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Ubfd1Q78JW9 Retreg1-201ENSMUST00000022881 3248 ntTSL 5 BASIC16.32■□□□□ 0.2
Ubfd1Q78JW9 Nfib-206ENSMUST00000107248 3294 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Ubfd1Q78JW9 Pld6-202ENSMUST00000125307 948 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Ubfd1Q78JW9 Gm16075-201ENSMUST00000135873 361 ntTSL 3 BASIC16.32■□□□□ 0.2
Ubfd1Q78JW9 Pea15a-201ENSMUST00000013842 2501 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Ubfd1Q78JW9 Gm17092-201ENSMUST00000166606 698 ntTSL 2 BASIC16.32■□□□□ 0.2
Ubfd1Q78JW9 Ppt2-205ENSMUST00000169067 1392 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
Ubfd1Q78JW9 Mir3081-201ENSMUST00000175305 84 ntBASIC16.32■□□□□ 0.2
Ubfd1Q78JW9 Gm37519-201ENSMUST00000191687 2210 ntBASIC16.32■□□□□ 0.2
Ubfd1Q78JW9 Zfp655-206ENSMUST00000200039 1765 ntAPPRIS ALT1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Ubfd1Q78JW9 Gm16499-203ENSMUST00000204633 2177 ntBASIC16.32■□□□□ 0.2
Ubfd1Q78JW9 Gm38534-201ENSMUST00000206566 1909 ntTSL 5 BASIC16.32■□□□□ 0.2
Ubfd1Q78JW9 Clasp2-204ENSMUST00000213663 2727 ntTSL 5 BASIC16.32■□□□□ 0.2
Ubfd1Q78JW9 Zbtb24-202ENSMUST00000213797 2734 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Ubfd1Q78JW9 Ankrd22-201ENSMUST00000025686 1766 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Ubfd1Q78JW9 Srrd-201ENSMUST00000031289 1110 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Ubfd1Q78JW9 Pik3r2-201ENSMUST00000034296 3165 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Ubfd1Q78JW9 Ppan-201ENSMUST00000004203 1670 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Ubfd1Q78JW9 Trap1-201ENSMUST00000006137 2320 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Ubfd1Q78JW9 Mrpl49-201ENSMUST00000007482 1722 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Ubfd1Q78JW9 Eif2b4-201ENSMUST00000077693 2025 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Ubfd1Q78JW9 Lrrc14-204ENSMUST00000137649 2832 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Ubfd1Q78JW9 Ankrd9-202ENSMUST00000128353 2577 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Ubfd1Q78JW9 Slc16a7-205ENSMUST00000210780 2562 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
Ubfd1Q78JW9 Asb1-202ENSMUST00000086843 2490 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Ubfd1Q78JW9 Dbn1-202ENSMUST00000109921 2378 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Ubfd1Q78JW9 Pkp4-202ENSMUST00000102754 4614 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
Ubfd1Q78JW9 Tbc1d9b-202ENSMUST00000101270 5213 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
Ubfd1Q78JW9 Pqlc1-208ENSMUST00000144468 1050 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Ubfd1Q78JW9 Atf7-209ENSMUST00000184485 2523 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Ubfd1Q78JW9 Kcnab3-201ENSMUST00000018614 2538 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Ubfd1Q78JW9 Spats2l-212ENSMUST00000170139 2315 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
Ubfd1Q78JW9 Ap1m1-201ENSMUST00000003117 2084 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Ubfd1Q78JW9 Hyls1-201ENSMUST00000115110 1973 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Ubfd1Q78JW9 Rbpms2-201ENSMUST00000055844 1987 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Ubfd1Q78JW9 Fam46c-201ENSMUST00000061455 5640 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Ubfd1Q78JW9 Dlgap4-205ENSMUST00000109567 4840 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
Ubfd1Q78JW9 Zfp264-201ENSMUST00000208656 1563 ntBASIC16.3■□□□□ 0.2
Ubfd1Q78JW9 Tacc3-203ENSMUST00000114426 2187 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
Ubfd1Q78JW9 Cspg5-205ENSMUST00000199736 2107 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Ubfd1Q78JW9 Arl1-202ENSMUST00000116234 2080 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Ubfd1Q78JW9 Zfyve19-201ENSMUST00000090174 2008 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Ubfd1Q78JW9 Slc38a10-202ENSMUST00000053692 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Ubfd1Q78JW9 Gm16181-201ENSMUST00000118793 567 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Ubfd1Q78JW9 Dohh-202ENSMUST00000121047 946 ntTSL 2 BASIC16.3■□□□□ 0.2
Ubfd1Q78JW9 Smim12-201ENSMUST00000142029 1022 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Ubfd1Q78JW9 Hist1h2bc-201ENSMUST00000018246 1156 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Ubfd1Q78JW9 Gm28402-201ENSMUST00000188574 373 ntTSL 3 BASIC16.3■□□□□ 0.2
Ubfd1Q78JW9 Spem1-201ENSMUST00000045771 1041 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Ubfd1Q78JW9 Hist1h2ba-201ENSMUST00000052776 384 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
Ubfd1Q78JW9 Nhs-201ENSMUST00000081569 4881 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
Ubfd1Q78JW9 Man1c1-202ENSMUST00000054096 4715 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
Ubfd1Q78JW9 Kcnk4-201ENSMUST00000025908 1715 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Ubfd1Q78JW9 Uri1-201ENSMUST00000085513 3441 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Ubfd1Q78JW9 Arpc4-201ENSMUST00000156898 2270 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Ubfd1Q78JW9 Rcc1-201ENSMUST00000030726 2278 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Ubfd1Q78JW9 Gm37811-201ENSMUST00000192416 2601 ntBASIC16.3■□□□□ 0.2
Ubfd1Q78JW9 8030462N17Rik-201ENSMUST00000074653 3418 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Ubfd1Q78JW9 Madcam1-201ENSMUST00000020554 1436 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Ubfd1Q78JW9 Hspb6-201ENSMUST00000044048 1363 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Ubfd1Q78JW9 Fjx1-201ENSMUST00000099678 3134 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
Ubfd1Q78JW9 Tmem131-208ENSMUST00000194563 6698 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
Ubfd1Q78JW9 Ptpre-207ENSMUST00000211140 5753 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
Ubfd1Q78JW9 Slain2-201ENSMUST00000143829 4828 ntTSL 5 BASIC16.29■□□□□ 0.2
Ubfd1Q78JW9 Fbrsl1-206ENSMUST00000198834 2571 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Ubfd1Q78JW9 H2-Q6-201ENSMUST00000113879 981 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
Ubfd1Q78JW9 Gm15794-201ENSMUST00000120182 631 ntBASIC16.29■□□□□ 0.2
Ubfd1Q78JW9 Tmem270-201ENSMUST00000047305 932 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Ubfd1Q78JW9 Mapk1-202ENSMUST00000069107 5099 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Ubfd1Q78JW9 Mark3-201ENSMUST00000075281 3321 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Ubfd1Q78JW9 Gapvd1-203ENSMUST00000113099 5758 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
Ubfd1Q78JW9 Mtcl1-201ENSMUST00000086693 7221 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
Ubfd1Q78JW9 Ing1-202ENSMUST00000209565 1971 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Ubfd1Q78JW9 C130026I21Rik-201ENSMUST00000064341 1561 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
Ubfd1Q78JW9 Mbp-201ENSMUST00000047865 2492 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Ubfd1Q78JW9 Map3k10-202ENSMUST00000108341 3403 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
Ubfd1Q78JW9 Pdap1-201ENSMUST00000031627 2353 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Ubfd1Q78JW9 Fhl3-201ENSMUST00000038684 1664 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Ubfd1Q78JW9 2810468N07Rik-201ENSMUST00000163493 1349 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Ubfd1Q78JW9 Gpsm3-201ENSMUST00000038244 1343 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Ubfd1Q78JW9 Fiz1-203ENSMUST00000167804 2637 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Ubfd1Q78JW9 Ripor2-202ENSMUST00000058009 2550 ntAPPRIS ALT2 TSL 2 BASIC16.28■□□□□ 0.2
Ubfd1Q78JW9 Amigo2-201ENSMUST00000053106 2871 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Ubfd1Q78JW9 2310009B15Rik-201ENSMUST00000112025 565 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
Ubfd1Q78JW9 Hotairm1-202ENSMUST00000132559 713 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Ubfd1Q78JW9 Psme2-208ENSMUST00000161807 962 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Ubfd1Q78JW9 Lce1k-201ENSMUST00000179917 663 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
Ubfd1Q78JW9 Gm28033-201ENSMUST00000184224 96 ntBASIC16.28■□□□□ 0.2
Retrieved 100 of 76,532 protein–RNA pairs in 34.8 ms