Protein–RNA interactions for Protein: Q5SNZ0

Ccdc88a, Girdin, mousemouse

Predictions only

Length 1,873 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88aQ5SNZ0 4930442P19Rik-201ENSMUST00000193163 1240 ntBASIC19.23■□□□□ 0.67
Ccdc88aQ5SNZ0 Dnph1-201ENSMUST00000046497 1106 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Ccdc88aQ5SNZ0 Gm7729-201ENSMUST00000050143 801 ntBASIC19.23■□□□□ 0.67
Ccdc88aQ5SNZ0 Gm5145-201ENSMUST00000095633 837 ntAPPRIS P1 BASIC19.23■□□□□ 0.67
Ccdc88aQ5SNZ0 Whrn-205ENSMUST00000095038 2665 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Ccdc88aQ5SNZ0 Yars2-204ENSMUST00000159962 2805 ntTSL 2 BASIC19.23■□□□□ 0.67
Ccdc88aQ5SNZ0 St8sia5-201ENSMUST00000075290 1841 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Ccdc88aQ5SNZ0 Iqcd-202ENSMUST00000094391 1673 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
Ccdc88aQ5SNZ0 Mkln1os-202ENSMUST00000144232 964 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Ccdc88aQ5SNZ0 Sardhos-201ENSMUST00000170435 265 ntTSL 3 BASIC19.22■□□□□ 0.67
Ccdc88aQ5SNZ0 Erdr1-203ENSMUST00000179077 887 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
Ccdc88aQ5SNZ0 2810030D12Rik-203ENSMUST00000190461 1039 ntBASIC19.22■□□□□ 0.67
Ccdc88aQ5SNZ0 Rbpms2-201ENSMUST00000055844 1987 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
Ccdc88aQ5SNZ0 Prdm11-201ENSMUST00000111272 3012 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
Ccdc88aQ5SNZ0 Fam102b-202ENSMUST00000171143 5702 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Ccdc88aQ5SNZ0 Zbtb45-201ENSMUST00000051390 2171 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Ccdc88aQ5SNZ0 Ecel1-204ENSMUST00000161002 3033 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Ccdc88aQ5SNZ0 Il4i1-202ENSMUST00000118125 2275 ntAPPRIS ALT2 TSL 2 BASIC19.22■□□□□ 0.67
Ccdc88aQ5SNZ0 Gm26892-201ENSMUST00000181695 1636 ntTSL 5 BASIC19.22■□□□□ 0.67
Ccdc88aQ5SNZ0 Tmx1-201ENSMUST00000021471 2795 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Ccdc88aQ5SNZ0 H2-K1-205ENSMUST00000172912 1570 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
Ccdc88aQ5SNZ0 Arl5b-206ENSMUST00000193836 481 ntTSL 2 BASIC19.22■□□□□ 0.67
Ccdc88aQ5SNZ0 Gm33054-201ENSMUST00000216588 313 ntTSL 5 BASIC19.22■□□□□ 0.67
Ccdc88aQ5SNZ0 AC154621.1-201ENSMUST00000226155 1119 ntBASIC19.22■□□□□ 0.67
Ccdc88aQ5SNZ0 Nme3-201ENSMUST00000024978 715 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Ccdc88aQ5SNZ0 Eif5a-203ENSMUST00000071026 1286 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Ccdc88aQ5SNZ0 Sytl3-201ENSMUST00000097430 2100 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Ccdc88aQ5SNZ0 Rad23a-202ENSMUST00000109761 1842 ntAPPRIS ALT1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Ccdc88aQ5SNZ0 Zfp92-202ENSMUST00000086470 2050 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Ccdc88aQ5SNZ0 Dtx2-201ENSMUST00000005072 2562 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
Ccdc88aQ5SNZ0 Ager-201ENSMUST00000015596 1370 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
Ccdc88aQ5SNZ0 Ube2f-204ENSMUST00000178627 1363 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Ccdc88aQ5SNZ0 Jak2-202ENSMUST00000065796 5030 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
Ccdc88aQ5SNZ0 Zfp655-206ENSMUST00000200039 1765 ntAPPRIS ALT1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Ccdc88aQ5SNZ0 Zfp24-203ENSMUST00000153337 1513 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Ccdc88aQ5SNZ0 4930447C04Rik-202ENSMUST00000110489 1988 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
Ccdc88aQ5SNZ0 Msh3-205ENSMUST00000187424 666 ntTSL 2 BASIC19.21■□□□□ 0.67
Ccdc88aQ5SNZ0 Tdrkh-208ENSMUST00000200486 1231 ntTSL 3 BASIC19.21■□□□□ 0.67
Ccdc88aQ5SNZ0 Crhbp-201ENSMUST00000045583 1701 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Ccdc88aQ5SNZ0 4933434E20Rik-209ENSMUST00000162114 1411 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Ccdc88aQ5SNZ0 Madcam1-201ENSMUST00000020554 1436 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Ccdc88aQ5SNZ0 B3gnt4-201ENSMUST00000031384 1423 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
Ccdc88aQ5SNZ0 Arl5a-201ENSMUST00000036541 5239 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Ccdc88aQ5SNZ0 AU022751-202ENSMUST00000117544 2201 ntAPPRIS P4 BASIC19.21■□□□□ 0.67
Ccdc88aQ5SNZ0 Gm16835-201ENSMUST00000140488 2809 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Ccdc88aQ5SNZ0 Ino80e-203ENSMUST00000106343 1973 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Ccdc88aQ5SNZ0 Psen2-205ENSMUST00000111108 1997 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Ccdc88aQ5SNZ0 Zkscan4-202ENSMUST00000225845 1506 ntBASIC19.2■□□□□ 0.66
Ccdc88aQ5SNZ0 Gm1401-201ENSMUST00000122048 772 ntBASIC19.2■□□□□ 0.66
Ccdc88aQ5SNZ0 Gm13054-201ENSMUST00000154192 820 ntTSL 3 BASIC19.2■□□□□ 0.66
Ccdc88aQ5SNZ0 Eif2b4-201ENSMUST00000077693 2025 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Ccdc88aQ5SNZ0 Apbb1-214ENSMUST00000189378 2878 ntAPPRIS ALT1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Ccdc88aQ5SNZ0 Rplp2-203ENSMUST00000106004 421 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
Ccdc88aQ5SNZ0 Tmsb4x-202ENSMUST00000112175 864 ntTSL 2 BASIC19.2■□□□□ 0.66
Ccdc88aQ5SNZ0 Rnf181-203ENSMUST00000114095 869 ntTSL 3 BASIC19.2■□□□□ 0.66
Ccdc88aQ5SNZ0 Gm4995-201ENSMUST00000117247 432 ntBASIC19.2■□□□□ 0.66
Ccdc88aQ5SNZ0 4933405L10Rik-201ENSMUST00000013302 1214 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Ccdc88aQ5SNZ0 9530052E02Rik-201ENSMUST00000180750 949 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Ccdc88aQ5SNZ0 Ssr2-205ENSMUST00000193934 569 ntTSL 3 BASIC19.2■□□□□ 0.66
Ccdc88aQ5SNZ0 Mrpl36-202ENSMUST00000221730 717 ntAPPRIS P1 TSL 3 BASIC19.2■□□□□ 0.66
Ccdc88aQ5SNZ0 Prm2-201ENSMUST00000037996 621 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Ccdc88aQ5SNZ0 Cebpzos-201ENSMUST00000063817 753 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
Ccdc88aQ5SNZ0 Gzme-201ENSMUST00000089549 916 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Ccdc88aQ5SNZ0 Gatc-201ENSMUST00000139167 1797 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Ccdc88aQ5SNZ0 Hps4-201ENSMUST00000035279 2836 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Ccdc88aQ5SNZ0 Spats2l-212ENSMUST00000170139 2315 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
Ccdc88aQ5SNZ0 5830415G21Rik-201ENSMUST00000192543 1332 ntBASIC19.19■□□□□ 0.66
Ccdc88aQ5SNZ0 Slc30a1-201ENSMUST00000044954 5244 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Ccdc88aQ5SNZ0 2310009B15Rik-201ENSMUST00000112025 565 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
Ccdc88aQ5SNZ0 Gm11779-201ENSMUST00000118541 368 ntBASIC19.19■□□□□ 0.66
Ccdc88aQ5SNZ0 Ascl2-202ENSMUST00000121862 814 ntAPPRIS ALT2 BASIC19.19■□□□□ 0.66
Ccdc88aQ5SNZ0 Pqlc1-208ENSMUST00000144468 1050 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Ccdc88aQ5SNZ0 4930515G01Rik-201ENSMUST00000173208 1247 ntBASIC19.19■□□□□ 0.66
Ccdc88aQ5SNZ0 Tecr-201ENSMUST00000019382 1158 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Ccdc88aQ5SNZ0 Gm44357-201ENSMUST00000195897 142 ntBASIC19.19■□□□□ 0.66
Ccdc88aQ5SNZ0 Gm19658-201ENSMUST00000196231 138 ntBASIC19.19■□□□□ 0.66
Ccdc88aQ5SNZ0 Gm44367-201ENSMUST00000196836 138 ntBASIC19.19■□□□□ 0.66
Ccdc88aQ5SNZ0 Gm44350-201ENSMUST00000197197 138 ntBASIC19.19■□□□□ 0.66
Ccdc88aQ5SNZ0 Gm44390-201ENSMUST00000197533 144 ntBASIC19.19■□□□□ 0.66
Ccdc88aQ5SNZ0 Gm44313-201ENSMUST00000198018 138 ntBASIC19.19■□□□□ 0.66
Ccdc88aQ5SNZ0 Gm44486-201ENSMUST00000198508 138 ntBASIC19.19■□□□□ 0.66
Ccdc88aQ5SNZ0 Gm44454-201ENSMUST00000198541 138 ntBASIC19.19■□□□□ 0.66
Ccdc88aQ5SNZ0 Gm44314-201ENSMUST00000199263 138 ntBASIC19.19■□□□□ 0.66
Ccdc88aQ5SNZ0 Gm44394-201ENSMUST00000199558 138 ntBASIC19.19■□□□□ 0.66
Ccdc88aQ5SNZ0 Gm44484-201ENSMUST00000199873 138 ntBASIC19.19■□□□□ 0.66
Ccdc88aQ5SNZ0 Gm44466-201ENSMUST00000200264 138 ntBASIC19.19■□□□□ 0.66
Ccdc88aQ5SNZ0 Gm44359-201ENSMUST00000200671 138 ntBASIC19.19■□□□□ 0.66
Ccdc88aQ5SNZ0 Cntln-204ENSMUST00000169371 5365 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
Ccdc88aQ5SNZ0 Gpr161-202ENSMUST00000178700 1827 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Ccdc88aQ5SNZ0 Coro1a-201ENSMUST00000032949 1660 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Ccdc88aQ5SNZ0 Polr3e-203ENSMUST00000207481 2545 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Ccdc88aQ5SNZ0 Pgm3-202ENSMUST00000072585 1920 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Ccdc88aQ5SNZ0 Bean1-203ENSMUST00000167633 3275 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
Ccdc88aQ5SNZ0 Mrpl49-201ENSMUST00000007482 1722 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Ccdc88aQ5SNZ0 Acvrl1-203ENSMUST00000119063 1818 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Ccdc88aQ5SNZ0 Lat-206ENSMUST00000206793 1215 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
Ccdc88aQ5SNZ0 Rpl13a-204ENSMUST00000209711 495 ntTSL 3 BASIC19.18■□□□□ 0.66
Ccdc88aQ5SNZ0 Vegfc-203ENSMUST00000210831 555 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Ccdc88aQ5SNZ0 AC159093.1-201ENSMUST00000227779 380 ntBASIC19.18■□□□□ 0.66
Ccdc88aQ5SNZ0 1700021F07Rik-201ENSMUST00000029023 646 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Retrieved 100 of 76,532 protein–RNA pairs in 18.6 ms