Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Ppp1r1b-204ENSMUST00000137634 1343 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
Limch1Q3UH68 Tmprss5-201ENSMUST00000070390 2047 ntAPPRIS P2 TSL 1 (best) BASIC19.73■□□□□ 0.75
Limch1Q3UH68 Sart3-201ENSMUST00000019118 4447 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Limch1Q3UH68 Ddn-201ENSMUST00000075444 3740 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Limch1Q3UH68 Tnfrsf25-202ENSMUST00000035275 1603 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
Limch1Q3UH68 March3-202ENSMUST00000102912 1754 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
Limch1Q3UH68 Fam131b-201ENSMUST00000031891 4065 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
Limch1Q3UH68 Gm26580-201ENSMUST00000181002 2095 ntTSL 5 BASIC19.72■□□□□ 0.75
Limch1Q3UH68 Slc29a1-202ENSMUST00000064889 1988 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
Limch1Q3UH68 Gm1673-202ENSMUST00000114382 451 ntAPPRIS ALT2 TSL 2 BASIC19.72■□□□□ 0.75
Limch1Q3UH68 Zfas1-205ENSMUST00000189909 738 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
Limch1Q3UH68 Spsb2-202ENSMUST00000052727 1219 ntAPPRIS P1 TSL 3 BASIC19.72■□□□□ 0.75
Limch1Q3UH68 Cadm3-201ENSMUST00000005470 2518 ntTSL 5 BASIC19.72■□□□□ 0.75
Limch1Q3UH68 Gm15743-202ENSMUST00000182690 1901 ntBASIC19.72■□□□□ 0.75
Limch1Q3UH68 Tead3-205ENSMUST00000154873 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
Limch1Q3UH68 Dnajb2-208ENSMUST00000188346 1823 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Limch1Q3UH68 Iqsec2-202ENSMUST00000112604 5967 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
Limch1Q3UH68 Gbe1-201ENSMUST00000023393 2846 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
Limch1Q3UH68 Ggt6-202ENSMUST00000100903 1387 ntTSL 5 BASIC19.71■□□□□ 0.75
Limch1Q3UH68 Lhfpl4-201ENSMUST00000162280 4762 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Limch1Q3UH68 Tm9sf1-205ENSMUST00000122358 2517 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Limch1Q3UH68 Slc22a3-201ENSMUST00000024595 3501 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Limch1Q3UH68 Mta3-203ENSMUST00000112350 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
Limch1Q3UH68 Fosl1-201ENSMUST00000025850 1707 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Limch1Q3UH68 Haglr-201ENSMUST00000100000 2085 ntBASIC19.71■□□□□ 0.75
Limch1Q3UH68 Map3k10-202ENSMUST00000108341 3403 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
Limch1Q3UH68 Cyb561d2-201ENSMUST00000041459 1786 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Limch1Q3UH68 Gm28793-201ENSMUST00000190845 413 ntTSL 5 BASIC19.71■□□□□ 0.75
Limch1Q3UH68 Yif1b-201ENSMUST00000032809 1111 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
Limch1Q3UH68 Prss27-201ENSMUST00000059482 1253 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Limch1Q3UH68 Capn1-202ENSMUST00000164843 3048 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
Limch1Q3UH68 Spout1-201ENSMUST00000100220 1805 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Limch1Q3UH68 Mid1ip1-201ENSMUST00000008179 2019 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Limch1Q3UH68 Prmt2-202ENSMUST00000099571 2052 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
Limch1Q3UH68 Hdhd2-202ENSMUST00000097521 1716 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
Limch1Q3UH68 Rogdi-207ENSMUST00000202281 1355 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Limch1Q3UH68 Ccdc106-204ENSMUST00000207974 2492 ntTSL 2 BASIC19.7■□□□□ 0.74
Limch1Q3UH68 Nmnat3-201ENSMUST00000112935 2166 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Limch1Q3UH68 Ccnl1-201ENSMUST00000029416 2169 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Limch1Q3UH68 Znrf1-201ENSMUST00000095176 3108 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Limch1Q3UH68 Hoxb2-201ENSMUST00000100523 1628 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Limch1Q3UH68 Sarm1-202ENSMUST00000108287 4868 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
Limch1Q3UH68 Gm8839-201ENSMUST00000121279 1645 ntBASIC19.7■□□□□ 0.74
Limch1Q3UH68 Crebzf-201ENSMUST00000061767 3376 ntAPPRIS P1 BASIC19.7■□□□□ 0.74
Limch1Q3UH68 Cldn18-203ENSMUST00000131922 860 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
Limch1Q3UH68 Gm33142-201ENSMUST00000193913 867 ntBASIC19.7■□□□□ 0.74
Limch1Q3UH68 Il3ra-202ENSMUST00000223589 738 ntBASIC19.7■□□□□ 0.74
Limch1Q3UH68 Ripply2-201ENSMUST00000058846 503 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Limch1Q3UH68 Fgf9-202ENSMUST00000074654 1198 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
Limch1Q3UH68 Opn4-202ENSMUST00000168444 2075 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
Limch1Q3UH68 Igdcc4-205ENSMUST00000213533 6220 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
Limch1Q3UH68 Igdcc4-201ENSMUST00000035499 6223 ntAPPRIS P2 TSL 1 (best) BASIC19.7■□□□□ 0.74
Limch1Q3UH68 Dnlz-201ENSMUST00000028295 2916 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Limch1Q3UH68 Abcd4-201ENSMUST00000021666 2309 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Limch1Q3UH68 AL590614.2-201ENSMUST00000225374 1937 ntBASIC19.7■□□□□ 0.74
Limch1Q3UH68 1300014J16Rik-201ENSMUST00000219015 1337 ntBASIC19.7■□□□□ 0.74
Limch1Q3UH68 Bicc1-203ENSMUST00000143791 5431 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Limch1Q3UH68 Mta1-201ENSMUST00000009099 2826 ntAPPRIS ALT2 TSL 5 BASIC19.7■□□□□ 0.74
Limch1Q3UH68 4933428P19Rik-201ENSMUST00000199616 1376 ntBASIC19.7■□□□□ 0.74
Limch1Q3UH68 Vmn1r17-201ENSMUST00000227186 2234 ntAPPRIS P2 BASIC19.7■□□□□ 0.74
Limch1Q3UH68 Nosip-201ENSMUST00000003513 1814 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
Limch1Q3UH68 Pacsin3-202ENSMUST00000059566 1867 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Limch1Q3UH68 Cds2-202ENSMUST00000103181 8396 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Limch1Q3UH68 Mtif3-201ENSMUST00000016654 2131 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Limch1Q3UH68 Slc38a10-202ENSMUST00000053692 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
Limch1Q3UH68 Spint2-202ENSMUST00000108236 1211 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Limch1Q3UH68 Fbxo9-203ENSMUST00000159099 1201 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Limch1Q3UH68 Psmd13-209ENSMUST00000164681 726 ntTSL 5 BASIC19.69■□□□□ 0.74
Limch1Q3UH68 4930544I03Rik-201ENSMUST00000181184 1276 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Limch1Q3UH68 AC134329.2-201ENSMUST00000217897 428 ntBASIC19.69■□□□□ 0.74
Limch1Q3UH68 AC120002.2-201ENSMUST00000220205 773 ntBASIC19.69■□□□□ 0.74
Limch1Q3UH68 Mst1-204ENSMUST00000162886 2209 ntAPPRIS ALT2 TSL 5 BASIC19.69■□□□□ 0.74
Limch1Q3UH68 Stk33-201ENSMUST00000090414 2221 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
Limch1Q3UH68 9330151L19Rik-201ENSMUST00000181850 2545 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Limch1Q3UH68 Fam166b-201ENSMUST00000052829 1349 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Limch1Q3UH68 Ccdc166-202ENSMUST00000183130 1563 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.74
Limch1Q3UH68 Cdv3-202ENSMUST00000072249 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
Limch1Q3UH68 Akap8l-201ENSMUST00000050214 2075 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Limch1Q3UH68 Dtx2-201ENSMUST00000005072 2562 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
Limch1Q3UH68 Bean1-204ENSMUST00000171018 3386 ntAPPRIS P4 TSL 1 (best) BASIC19.69■□□□□ 0.74
Limch1Q3UH68 Col11a2-203ENSMUST00000114255 5722 ntAPPRIS ALT2 TSL 5 BASIC19.69■□□□□ 0.74
Limch1Q3UH68 Ppp2r2d-207ENSMUST00000155672 1938 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Limch1Q3UH68 Rusc1-203ENSMUST00000166687 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
Limch1Q3UH68 Gm3488-202ENSMUST00000181562 1945 ntAPPRIS P5 TSL 5 BASIC19.68■□□□□ 0.74
Limch1Q3UH68 Tm6sf2-202ENSMUST00000110160 1446 ntAPPRIS ALT1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Limch1Q3UH68 Ctcf-201ENSMUST00000005841 3782 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Limch1Q3UH68 Cdc14b-203ENSMUST00000109770 3052 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
Limch1Q3UH68 Rab35-201ENSMUST00000031492 2820 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Limch1Q3UH68 Pard6g-201ENSMUST00000070219 3143 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Limch1Q3UH68 Timm44-201ENSMUST00000003029 1790 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Limch1Q3UH68 Zfp512b-201ENSMUST00000108789 5714 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Limch1Q3UH68 Lsm1-201ENSMUST00000038421 2663 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Limch1Q3UH68 Eif4e2-205ENSMUST00000113232 1125 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Limch1Q3UH68 Naf1-201ENSMUST00000118009 2990 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Limch1Q3UH68 Lce1h-201ENSMUST00000051521 706 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Limch1Q3UH68 Auh-201ENSMUST00000021913 1320 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Limch1Q3UH68 Abi1-215ENSMUST00000178908 2239 ntAPPRIS ALT1 TSL 5 BASIC19.68■□□□□ 0.74
Limch1Q3UH68 Iqgap2-201ENSMUST00000068603 5771 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Limch1Q3UH68 Cct8-201ENSMUST00000026704 2394 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Limch1Q3UH68 Mmp23-201ENSMUST00000030937 1434 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Retrieved 100 of 76,532 protein–RNA pairs in 26.6 ms