Protein–RNA interactions for Protein: Q3U1J4

Ddb1, DNA damage-binding protein 1, mousemouse

Known RBP Predictions only

Length 1,140 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddb1Q3U1J4 Stac-201ENSMUST00000035083 2644 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Ddb1Q3U1J4 Dtx4-201ENSMUST00000045521 5765 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Ddb1Q3U1J4 Sars2-201ENSMUST00000094632 1868 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Ddb1Q3U1J4 Fam107a-202ENSMUST00000120411 2093 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Ddb1Q3U1J4 Slc16a7-205ENSMUST00000210780 2562 ntAPPRIS P1 TSL 5 BASIC21.3■■□□□ 1
Ddb1Q3U1J4 Kcnc3-207ENSMUST00000209177 2960 ntAPPRIS ALT2 TSL 5 BASIC21.3■■□□□ 1
Ddb1Q3U1J4 Tada2b-201ENSMUST00000031097 3791 ntAPPRIS P1 TSL 2 BASIC21.3■■□□□ 1
Ddb1Q3U1J4 Gm2694-204ENSMUST00000181898 1303 ntTSL 1 (best) BASIC21.29■■□□□ 1
Ddb1Q3U1J4 Gm15442-201ENSMUST00000117905 1527 ntBASIC21.29■■□□□ 1
Ddb1Q3U1J4 AK157302-201ENSMUST00000104942 1924 ntAPPRIS P1 BASIC21.29■■□□□ 1
Ddb1Q3U1J4 Ccdc102a-201ENSMUST00000077955 2304 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Ddb1Q3U1J4 Prdm8-202ENSMUST00000210477 3316 ntAPPRIS P1 TSL 5 BASIC21.29■■□□□ 1
Ddb1Q3U1J4 Dennd3-201ENSMUST00000043414 5299 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Ddb1Q3U1J4 Galnt9-201ENSMUST00000040001 2883 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Ddb1Q3U1J4 Gjb1-203ENSMUST00000119190 1585 ntAPPRIS P1 TSL 2 BASIC21.29■■□□□ 1
Ddb1Q3U1J4 Gm28111-201ENSMUST00000187786 1393 ntTSL 1 (best) BASIC21.29■■□□□ 1
Ddb1Q3U1J4 Fam71e1-204ENSMUST00000205422 366 ntTSL 1 (best) BASIC21.29■■□□□ 1
Ddb1Q3U1J4 AC114585.2-202ENSMUST00000228094 426 ntBASIC21.29■■□□□ 1
Ddb1Q3U1J4 Gins1-201ENSMUST00000028948 1087 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Ddb1Q3U1J4 Cd47-201ENSMUST00000084838 5277 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Ddb1Q3U1J4 Mxi1-202ENSMUST00000025998 4996 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Ddb1Q3U1J4 Nrn1-201ENSMUST00000037623 1619 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Ddb1Q3U1J4 Ccdc126-201ENSMUST00000055559 2351 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Ddb1Q3U1J4 Dapk1-207ENSMUST00000226059 5009 ntBASIC21.28■■□□□ 1
Ddb1Q3U1J4 Ppp3cb-206ENSMUST00000161989 2322 ntTSL 1 (best) BASIC21.28■■□□□ 1
Ddb1Q3U1J4 Nlgn2-202ENSMUST00000108634 5568 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Ddb1Q3U1J4 Zpbp2-203ENSMUST00000107509 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
Ddb1Q3U1J4 Timm13-203ENSMUST00000218481 471 ntTSL 3 BASIC21.28■■□□□ 1
Ddb1Q3U1J4 Ndufb6-201ENSMUST00000095128 659 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Ddb1Q3U1J4 Lca5l-201ENSMUST00000054855 2508 ntAPPRIS P2 TSL 1 (best) BASIC21.28■■□□□ 1
Ddb1Q3U1J4 Wnk2-204ENSMUST00000110096 6534 ntAPPRIS ALT2 TSL 5 BASIC21.28■■□□□ 1
Ddb1Q3U1J4 Itsn2-201ENSMUST00000062580 5987 ntAPPRIS P2 TSL 5 BASIC21.27■■□□□ 1
Ddb1Q3U1J4 Arhgap23-203ENSMUST00000121799 5816 ntAPPRIS P1 TSL 5 BASIC21.27■■□□□ 1
Ddb1Q3U1J4 Cebpg-202ENSMUST00000130491 4709 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Ddb1Q3U1J4 Stk11-201ENSMUST00000003152 2566 ntAPPRIS P3 TSL 1 (best) BASIC21.27■■□□□ 1
Ddb1Q3U1J4 Aspscr1-204ENSMUST00000106159 1615 ntTSL 5 BASIC21.27■■□□□ 1
Ddb1Q3U1J4 Klk6-202ENSMUST00000107967 1172 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Ddb1Q3U1J4 Pgam1-ps1-201ENSMUST00000119107 749 ntBASIC21.27■■□□□ 1
Ddb1Q3U1J4 Bola3-202ENSMUST00000120040 583 ntTSL 3 BASIC21.27■■□□□ 1
Ddb1Q3U1J4 Gm6184-201ENSMUST00000120403 1261 ntBASIC21.27■■□□□ 1
Ddb1Q3U1J4 Sumo3-204ENSMUST00000129492 487 ntAPPRIS ALT2 TSL 2 BASIC21.27■■□□□ 1
Ddb1Q3U1J4 Gm7616-201ENSMUST00000143112 624 ntTSL 3 BASIC21.27■■□□□ 1
Ddb1Q3U1J4 Gm26308-201ENSMUST00000157768 69 ntBASIC21.27■■□□□ 1
Ddb1Q3U1J4 Fam159a-201ENSMUST00000053157 593 ntAPPRIS P1 TSL 5 BASIC21.27■■□□□ 1
Ddb1Q3U1J4 Slc1a6-201ENSMUST00000005490 2029 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Ddb1Q3U1J4 Rprd1b-207ENSMUST00000152452 1910 ntTSL 1 (best) BASIC21.27■■□□□ 1
Ddb1Q3U1J4 Pdzd8-201ENSMUST00000099274 7076 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Ddb1Q3U1J4 Gm10505-201ENSMUST00000151398 1587 ntTSL 1 (best) BASIC21.27■□□□□ 0.99
Ddb1Q3U1J4 Tbc1d25-201ENSMUST00000039892 2648 ntAPPRIS P3 TSL 1 (best) BASIC21.26■□□□□ 0.99
Ddb1Q3U1J4 Ankrd61-202ENSMUST00000110717 1498 ntAPPRIS P3 TSL 1 (best) BASIC21.26■□□□□ 0.99
Ddb1Q3U1J4 Nexmif-201ENSMUST00000056502 5211 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
Ddb1Q3U1J4 Fam78b-205ENSMUST00000165874 4986 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Ddb1Q3U1J4 Pds5a-209ENSMUST00000201948 8934 ntAPPRIS P1 TSL 5 BASIC21.26■□□□□ 0.99
Ddb1Q3U1J4 Gnb1-203ENSMUST00000165335 3143 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Ddb1Q3U1J4 Thap7-201ENSMUST00000100125 1248 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Ddb1Q3U1J4 Mymx-202ENSMUST00000169137 616 ntAPPRIS P4 TSL 2 BASIC21.26■□□□□ 0.99
Ddb1Q3U1J4 Gm20481-201ENSMUST00000173680 564 ntAPPRIS P1 TSL 3 BASIC21.26■□□□□ 0.99
Ddb1Q3U1J4 Gm3336-201ENSMUST00000179347 1149 ntAPPRIS P2 TSL 5 BASIC21.26■□□□□ 0.99
Ddb1Q3U1J4 1700025N23Rik-201ENSMUST00000186189 915 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
Ddb1Q3U1J4 Dnmt3a-ps1-201ENSMUST00000192011 1271 ntBASIC21.26■□□□□ 0.99
Ddb1Q3U1J4 Rpl31-205ENSMUST00000194746 703 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
Ddb1Q3U1J4 AC151286.1-201ENSMUST00000198489 145 ntBASIC21.26■□□□□ 0.99
Ddb1Q3U1J4 Zfp787-206ENSMUST00000208746 535 ntTSL 2 BASIC21.26■□□□□ 0.99
Ddb1Q3U1J4 Gm3336-202ENSMUST00000213065 842 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
Ddb1Q3U1J4 Rogdi-202ENSMUST00000090453 652 ntTSL 5 BASIC21.26■□□□□ 0.99
Ddb1Q3U1J4 AI846148-201ENSMUST00000025924 3183 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Ddb1Q3U1J4 Brpf3-201ENSMUST00000004985 5766 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Ddb1Q3U1J4 Rhbdl1-202ENSMUST00000183929 1349 ntTSL 5 BASIC21.26■□□□□ 0.99
Ddb1Q3U1J4 8030462N17Rik-201ENSMUST00000074653 3418 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Ddb1Q3U1J4 Tmem164-201ENSMUST00000087333 5149 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Ddb1Q3U1J4 Map3k9-201ENSMUST00000035987 4564 ntAPPRIS P2 TSL 1 (best) BASIC21.26■□□□□ 0.99
Ddb1Q3U1J4 Gga2-201ENSMUST00000033160 4915 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Ddb1Q3U1J4 Cyp4f15-201ENSMUST00000008801 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
Ddb1Q3U1J4 Adam15-203ENSMUST00000107446 1686 ntTSL 5 BASIC21.25■□□□□ 0.99
Ddb1Q3U1J4 Gm8097-201ENSMUST00000117903 829 ntBASIC21.25■□□□□ 0.99
Ddb1Q3U1J4 Gm11780-201ENSMUST00000136880 516 ntBASIC21.25■□□□□ 0.99
Ddb1Q3U1J4 Nudt6-208ENSMUST00000146324 1264 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Ddb1Q3U1J4 Slc25a11-201ENSMUST00000014750 1711 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Ddb1Q3U1J4 Gm25911-201ENSMUST00000157621 56 ntBASIC21.25■□□□□ 0.99
Ddb1Q3U1J4 Gm44264-201ENSMUST00000203049 742 ntTSL 3 BASIC21.25■□□□□ 0.99
Ddb1Q3U1J4 Olfr615-201ENSMUST00000098198 942 ntAPPRIS P1 BASIC21.25■□□□□ 0.99
Ddb1Q3U1J4 Pxk-201ENSMUST00000036682 2812 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
Ddb1Q3U1J4 Ino80e-201ENSMUST00000050833 1944 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Ddb1Q3U1J4 AC122901.1-201ENSMUST00000214203 1790 ntBASIC21.25■□□□□ 0.99
Ddb1Q3U1J4 Alg3-201ENSMUST00000045918 1451 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Ddb1Q3U1J4 AC123834.2-201ENSMUST00000224038 2340 ntBASIC21.24■□□□□ 0.99
Ddb1Q3U1J4 Fam105a-202ENSMUST00000226145 2950 ntAPPRIS P1 BASIC21.24■□□□□ 0.99
Ddb1Q3U1J4 Mff-202ENSMUST00000078332 1894 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Ddb1Q3U1J4 Marcks-201ENSMUST00000092584 4048 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Ddb1Q3U1J4 Snx14-205ENSMUST00000173011 2238 ntTSL 5 BASIC21.24■□□□□ 0.99
Ddb1Q3U1J4 Cers1-202ENSMUST00000140239 2711 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
Ddb1Q3U1J4 Gm3248-201ENSMUST00000163885 2055 ntAPPRIS P1 TSL 5 BASIC21.24■□□□□ 0.99
Ddb1Q3U1J4 Gm37500-201ENSMUST00000192059 1443 ntBASIC21.24■□□□□ 0.99
Ddb1Q3U1J4 Dpm3-202ENSMUST00000107462 827 ntAPPRIS P1 TSL 3 BASIC21.24■□□□□ 0.99
Ddb1Q3U1J4 Taf3-202ENSMUST00000114906 583 ntTSL 2 BASIC21.24■□□□□ 0.99
Ddb1Q3U1J4 Ctcflos-201ENSMUST00000142165 469 ntTSL 3 BASIC21.24■□□□□ 0.99
Ddb1Q3U1J4 Entpd4-205ENSMUST00000184314 989 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Ddb1Q3U1J4 Entpd4b-201ENSMUST00000064846 989 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Ddb1Q3U1J4 Atp10a-201ENSMUST00000168747 5419 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Ddb1Q3U1J4 Fam57b-201ENSMUST00000079423 2328 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Retrieved 100 of 76,532 protein–RNA pairs in 41.2 ms