Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Rassf1-202ENSMUST00000093786 1787 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Col28a1Q2UY11 Gnaz-201ENSMUST00000037813 3519 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Col28a1Q2UY11 Pi4kb-202ENSMUST00000107251 2895 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Col28a1Q2UY11 Leprotl1-201ENSMUST00000033910 2879 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Col28a1Q2UY11 Lat2-202ENSMUST00000077636 1717 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Col28a1Q2UY11 Dpep3-201ENSMUST00000034371 1698 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Col28a1Q2UY11 Anapc5-201ENSMUST00000086216 2760 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
Col28a1Q2UY11 Mzf1-202ENSMUST00000182087 2197 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Col28a1Q2UY11 Chst5-201ENSMUST00000034430 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Col28a1Q2UY11 Klf13-201ENSMUST00000063694 6396 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Col28a1Q2UY11 6330411D24Rik-201ENSMUST00000211105 1568 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Col28a1Q2UY11 Rgs3-203ENSMUST00000098031 2072 ntAPPRIS ALT1 TSL 5 BASIC16.3■□□□□ 0.2
Col28a1Q2UY11 Hey2-201ENSMUST00000019924 2550 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Col28a1Q2UY11 Pde8b-202ENSMUST00000067082 2598 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
Col28a1Q2UY11 Ptpro-203ENSMUST00000167679 5096 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Col28a1Q2UY11 Mid1ip1-202ENSMUST00000115524 2022 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Col28a1Q2UY11 Slc46a1-201ENSMUST00000001126 1978 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Col28a1Q2UY11 Ssu72-201ENSMUST00000030905 1472 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Col28a1Q2UY11 Nrn1-203ENSMUST00000223611 1443 ntBASIC16.29■□□□□ 0.2
Col28a1Q2UY11 Knl1-201ENSMUST00000028799 5527 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Col28a1Q2UY11 Gm13327-201ENSMUST00000133391 2741 ntTSL 5 BASIC16.29■□□□□ 0.2
Col28a1Q2UY11 Timm44-201ENSMUST00000003029 1790 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Col28a1Q2UY11 Hmga1-202ENSMUST00000117254 1328 ntAPPRIS P3 TSL 2 BASIC16.29■□□□□ 0.2
Col28a1Q2UY11 Vim-201ENSMUST00000028062 2193 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Col28a1Q2UY11 Tlcd1-203ENSMUST00000108338 714 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Col28a1Q2UY11 Gm15565-201ENSMUST00000118890 427 ntBASIC16.29■□□□□ 0.2
Col28a1Q2UY11 Dnajb3-201ENSMUST00000119972 1051 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
Col28a1Q2UY11 1110065P20Rik-203ENSMUST00000137769 659 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Col28a1Q2UY11 Calu-208ENSMUST00000173694 611 ntTSL 5 BASIC16.29■□□□□ 0.2
Col28a1Q2UY11 Gm26879-201ENSMUST00000181127 1176 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Col28a1Q2UY11 Gm16998-201ENSMUST00000181899 1230 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Col28a1Q2UY11 Gm18666-201ENSMUST00000190039 958 ntBASIC16.29■□□□□ 0.2
Col28a1Q2UY11 AC061963.1-203ENSMUST00000213473 453 ntTSL 3 BASIC16.29■□□□□ 0.2
Col28a1Q2UY11 Osbpl1a-205ENSMUST00000119512 1947 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Col28a1Q2UY11 Abhd16a-201ENSMUST00000007251 1945 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Col28a1Q2UY11 Gm10516-201ENSMUST00000180598 2615 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Col28a1Q2UY11 Flg-201ENSMUST00000050758 1488 ntBASIC16.29■□□□□ 0.2
Col28a1Q2UY11 Atp1a1-201ENSMUST00000036493 3679 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Col28a1Q2UY11 Epm2a-201ENSMUST00000069106 3287 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Col28a1Q2UY11 Gm1043-204ENSMUST00000207866 4296 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
Col28a1Q2UY11 Car2-201ENSMUST00000029078 1788 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Col28a1Q2UY11 Slc13a3-202ENSMUST00000109279 3131 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Col28a1Q2UY11 Tbp-202ENSMUST00000117593 2067 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Col28a1Q2UY11 Lrg1-201ENSMUST00000041357 1351 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Col28a1Q2UY11 She-201ENSMUST00000050401 5733 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Col28a1Q2UY11 Whrn-207ENSMUST00000107393 4028 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Col28a1Q2UY11 Whrn-203ENSMUST00000084510 4049 ntAPPRIS P4 TSL 1 (best) BASIC16.28■□□□□ 0.2
Col28a1Q2UY11 Phtf1-202ENSMUST00000063717 3327 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Col28a1Q2UY11 Tfeb-204ENSMUST00000113288 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Col28a1Q2UY11 Tmed3-201ENSMUST00000058488 1346 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Col28a1Q2UY11 Pdcl3-201ENSMUST00000027247 3914 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Col28a1Q2UY11 Crct1-202ENSMUST00000107301 460 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
Col28a1Q2UY11 Zfp64-202ENSMUST00000109161 1009 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Col28a1Q2UY11 Josd2-205ENSMUST00000120852 727 ntAPPRIS P1 TSL 3 BASIC16.28■□□□□ 0.2
Col28a1Q2UY11 2900072N19Rik-201ENSMUST00000123840 806 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Col28a1Q2UY11 Shq1-202ENSMUST00000113312 6816 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Col28a1Q2UY11 Bcam-201ENSMUST00000003061 2429 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Col28a1Q2UY11 Zmynd19-201ENSMUST00000028350 3903 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Col28a1Q2UY11 Med7-209ENSMUST00000170928 2390 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Col28a1Q2UY11 Crtac1-201ENSMUST00000048630 2616 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Col28a1Q2UY11 Cygb-201ENSMUST00000021166 2331 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Col28a1Q2UY11 Slc15a3-201ENSMUST00000025646 2345 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Col28a1Q2UY11 Espnl-201ENSMUST00000088904 5445 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Col28a1Q2UY11 Sh3rf3-205ENSMUST00000153031 5682 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Col28a1Q2UY11 Zfp219-212ENSMUST00000228580 2812 ntAPPRIS ALT2 BASIC16.27■□□□□ 0.2
Col28a1Q2UY11 Dach1-201ENSMUST00000069334 5063 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
Col28a1Q2UY11 Ccdc106-204ENSMUST00000207974 2492 ntTSL 2 BASIC16.27■□□□□ 0.2
Col28a1Q2UY11 Emc8-201ENSMUST00000034277 4942 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Col28a1Q2UY11 Fbrsl1-201ENSMUST00000056124 2700 ntTSL 2 BASIC16.27■□□□□ 0.2
Col28a1Q2UY11 Pacsin3-201ENSMUST00000028694 1862 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Col28a1Q2UY11 Ttc39b-202ENSMUST00000048274 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
Col28a1Q2UY11 Sept8-201ENSMUST00000108987 4436 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
Col28a1Q2UY11 Parg-201ENSMUST00000022470 4413 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.2
Col28a1Q2UY11 Rrbp1-201ENSMUST00000016072 5177 ntAPPRIS P4 TSL 5 BASIC16.27■□□□□ 0.2
Col28a1Q2UY11 Fam199x-201ENSMUST00000047852 8299 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Col28a1Q2UY11 Lrrc36-206ENSMUST00000216765 2301 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.2
Col28a1Q2UY11 Ccdc107-202ENSMUST00000107922 865 ntAPPRIS ALT2 TSL 2 BASIC16.27■□□□□ 0.2
Col28a1Q2UY11 Josd2-203ENSMUST00000118493 922 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.2
Col28a1Q2UY11 Gm11527-201ENSMUST00000153795 596 ntTSL 2 BASIC16.27■□□□□ 0.2
Col28a1Q2UY11 Crybb1-201ENSMUST00000031286 882 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Col28a1Q2UY11 Mrps12-201ENSMUST00000056078 722 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Col28a1Q2UY11 Slc6a1-204ENSMUST00000204074 1740 ntTSL 5 BASIC16.27■□□□□ 0.19
Col28a1Q2UY11 Sharpin-201ENSMUST00000023211 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Col28a1Q2UY11 Fam171a1-203ENSMUST00000091505 3449 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
Col28a1Q2UY11 Tcp1-209ENSMUST00000151287 2446 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Col28a1Q2UY11 Fscn1-207ENSMUST00000198017 2157 ntTSL 5 BASIC16.27■□□□□ 0.19
Col28a1Q2UY11 Tox2-205ENSMUST00000165937 1675 ntAPPRIS P2 TSL 5 BASIC16.27■□□□□ 0.19
Col28a1Q2UY11 Itpripl2-201ENSMUST00000178344 6865 ntAPPRIS P1 BASIC16.27■□□□□ 0.19
Col28a1Q2UY11 Dhcr24-201ENSMUST00000047973 4028 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Col28a1Q2UY11 Gal3st1-201ENSMUST00000063004 1879 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Col28a1Q2UY11 Taz-201ENSMUST00000069722 1851 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.19
Col28a1Q2UY11 Atxn7l3-202ENSMUST00000107132 3706 ntAPPRIS P4 TSL 5 BASIC16.27■□□□□ 0.19
Col28a1Q2UY11 Tmem229a-201ENSMUST00000127247 5157 ntAPPRIS P1 BASIC16.26■□□□□ 0.19
Col28a1Q2UY11 Serac1-201ENSMUST00000024570 2033 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
Col28a1Q2UY11 Eif1a-202ENSMUST00000168382 1750 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Col28a1Q2UY11 Dars-201ENSMUST00000027602 2175 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Col28a1Q2UY11 Fubp1-205ENSMUST00000196695 2374 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
Col28a1Q2UY11 Fosl1-201ENSMUST00000025850 1707 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Col28a1Q2UY11 Gm11643-201ENSMUST00000119578 864 ntBASIC16.26■□□□□ 0.19
Col28a1Q2UY11 Tnfaip8l2-201ENSMUST00000013851 1122 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Retrieved 100 of 76,532 protein–RNA pairs in 44.8 ms