Protein–RNA interactions for Protein: Q05722

Col9a1, Collagen alpha-1(IX) chain, mousemouse

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col9a1Q05722 Rab3a-202ENSMUST00000110090 1375 ntAPPRIS P1 TSL 3 BASIC16.41■□□□□ 0.22
Col9a1Q05722 Pld5-202ENSMUST00000111166 1370 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Col9a1Q05722 Cdk5-201ENSMUST00000030814 2059 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Col9a1Q05722 Fhl3-201ENSMUST00000038684 1664 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Col9a1Q05722 AC155937.1-201ENSMUST00000125635 831 ntAPPRIS P1 TSL 3 BASIC16.41■□□□□ 0.22
Col9a1Q05722 Ncr3-ps-201ENSMUST00000134687 525 ntBASIC16.41■□□□□ 0.22
Col9a1Q05722 4933401J01Rik-201ENSMUST00000193812 1070 ntBASIC16.41■□□□□ 0.22
Col9a1Q05722 AC130829.1-201ENSMUST00000221548 494 ntBASIC16.41■□□□□ 0.22
Col9a1Q05722 4930451I11Rik-201ENSMUST00000061695 481 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Col9a1Q05722 Ppp6r2-202ENSMUST00000226221 2559 ntBASIC16.41■□□□□ 0.22
Col9a1Q05722 Arl5c-201ENSMUST00000042971 1571 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Col9a1Q05722 Klhl8-201ENSMUST00000031254 3193 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Col9a1Q05722 Nubp1-201ENSMUST00000023146 2121 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Col9a1Q05722 1810043G02Rik-201ENSMUST00000105397 1818 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
Col9a1Q05722 Nap1l1-206ENSMUST00000219143 1365 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Col9a1Q05722 Rab40c-207ENSMUST00000167626 2506 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Col9a1Q05722 Hsd17b7-202ENSMUST00000111353 1446 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Col9a1Q05722 Thap3-202ENSMUST00000105665 832 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
Col9a1Q05722 Gm7222-201ENSMUST00000117512 906 ntBASIC16.4■□□□□ 0.22
Col9a1Q05722 Gm16194-203ENSMUST00000141239 362 ntTSL 3 BASIC16.4■□□□□ 0.22
Col9a1Q05722 Gm25745-201ENSMUST00000174945 133 ntBASIC16.4■□□□□ 0.22
Col9a1Q05722 Hnrnpa1l2-ps2-201ENSMUST00000022493 963 ntBASIC16.4■□□□□ 0.22
Col9a1Q05722 Vsig10-201ENSMUST00000086464 2052 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
Col9a1Q05722 Stam2-202ENSMUST00000127316 1928 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Col9a1Q05722 Hpn-209ENSMUST00000168884 1762 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Col9a1Q05722 Mdh2-201ENSMUST00000019323 1456 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Col9a1Q05722 Gm5414-201ENSMUST00000062879 1659 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
Col9a1Q05722 Nup85-201ENSMUST00000021085 2230 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.22
Col9a1Q05722 Atg16l2-202ENSMUST00000122116 2083 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
Col9a1Q05722 Lrrc36-202ENSMUST00000109355 2411 ntAPPRIS P2 TSL 5 BASIC16.39■□□□□ 0.21
Col9a1Q05722 Isyna1-204ENSMUST00000210005 1914 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
Col9a1Q05722 Slc30a4-201ENSMUST00000005952 5458 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Col9a1Q05722 Ints6-201ENSMUST00000053959 4993 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Col9a1Q05722 Pde7a-202ENSMUST00000099195 6298 ntAPPRIS ALT1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Col9a1Q05722 Mapkapk2-201ENSMUST00000016672 2854 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Col9a1Q05722 Whamm-201ENSMUST00000165460 3069 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Col9a1Q05722 Naa10-203ENSMUST00000114387 979 ntAPPRIS ALT2 TSL 2 BASIC16.39■□□□□ 0.21
Col9a1Q05722 Gm11508-201ENSMUST00000129337 440 ntTSL 2 BASIC16.39■□□□□ 0.21
Col9a1Q05722 Gldnos-201ENSMUST00000149237 841 ntTSL 2 BASIC16.39■□□□□ 0.21
Col9a1Q05722 Klf13-202ENSMUST00000183817 599 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Col9a1Q05722 Tmem38a-203ENSMUST00000212763 882 ntTSL 3 BASIC16.39■□□□□ 0.21
Col9a1Q05722 Gm39317-201ENSMUST00000213360 1138 ntTSL 5 BASIC16.39■□□□□ 0.21
Col9a1Q05722 Gm36756-203ENSMUST00000223029 1166 ntTSL 5 BASIC16.39■□□□□ 0.21
Col9a1Q05722 Abcc5-203ENSMUST00000096199 1136 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Col9a1Q05722 Gm3468-201ENSMUST00000165193 1955 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
Col9a1Q05722 Gm2956-201ENSMUST00000177786 1955 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
Col9a1Q05722 1700008J07Rik-201ENSMUST00000185351 2432 ntBASIC16.38■□□□□ 0.21
Col9a1Q05722 Ptges3-201ENSMUST00000052798 2000 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Col9a1Q05722 Gm11747-201ENSMUST00000142751 1648 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
Col9a1Q05722 Zfp800-203ENSMUST00000115321 2699 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Col9a1Q05722 Rcc1-202ENSMUST00000084250 2285 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Col9a1Q05722 Syt3-203ENSMUST00000120262 2096 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
Col9a1Q05722 H2-T23-201ENSMUST00000102678 1472 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Col9a1Q05722 2410006H16Rik-201ENSMUST00000131787 462 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
Col9a1Q05722 Hoxa7-202ENSMUST00000134367 807 ntTSL 5 BASIC16.38■□□□□ 0.21
Col9a1Q05722 Spata3-209ENSMUST00000152501 743 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
Col9a1Q05722 Gm15494-202ENSMUST00000171665 451 ntTSL 2 BASIC16.38■□□□□ 0.21
Col9a1Q05722 Gm27622-201ENSMUST00000183779 60 ntBASIC16.38■□□□□ 0.21
Col9a1Q05722 0610005C13Rik-201ENSMUST00000209416 856 ntTSL 5 BASIC16.38■□□□□ 0.21
Col9a1Q05722 Cript-201ENSMUST00000024959 1184 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Col9a1Q05722 Gm9898-201ENSMUST00000065469 1161 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
Col9a1Q05722 Lhb-201ENSMUST00000072453 678 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
Col9a1Q05722 Gpr137c-207ENSMUST00000227086 4997 ntAPPRIS ALT2 BASIC16.38■□□□□ 0.21
Col9a1Q05722 Prss54-205ENSMUST00000213096 1501 ntAPPRIS P3 TSL 5 BASIC16.38■□□□□ 0.21
Col9a1Q05722 Ern1-204ENSMUST00000106801 1957 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
Col9a1Q05722 Znrf1-205ENSMUST00000172856 4600 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
Col9a1Q05722 Gcat-202ENSMUST00000171999 1763 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
Col9a1Q05722 Gm10505-201ENSMUST00000151398 1587 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
Col9a1Q05722 Zbtb25-201ENSMUST00000167011 1681 ntAPPRIS P1 TSL 2 BASIC16.37■□□□□ 0.21
Col9a1Q05722 Arfip1-202ENSMUST00000107687 1714 ntTSL 5 BASIC16.37■□□□□ 0.21
Col9a1Q05722 Gm27244-201ENSMUST00000184260 380 ntTSL 5 BASIC16.37■□□□□ 0.21
Col9a1Q05722 Arfgap1-213ENSMUST00000184394 1209 ntAPPRIS ALT2 TSL 5 BASIC16.37■□□□□ 0.21
Col9a1Q05722 Snrpf-201ENSMUST00000020203 861 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Col9a1Q05722 AC124732.2-201ENSMUST00000221977 316 ntBASIC16.37■□□□□ 0.21
Col9a1Q05722 CT009764.1-201ENSMUST00000222260 483 ntBASIC16.37■□□□□ 0.21
Col9a1Q05722 Thoc7-209ENSMUST00000225325 765 ntBASIC16.37■□□□□ 0.21
Col9a1Q05722 Srrd-201ENSMUST00000031289 1110 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Col9a1Q05722 Tex12-201ENSMUST00000034568 895 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Col9a1Q05722 Tspo-201ENSMUST00000047419 837 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Col9a1Q05722 Qsox2-201ENSMUST00000036187 2559 ntAPPRIS P1 TSL 5 BASIC16.37■□□□□ 0.21
Col9a1Q05722 Renbp-201ENSMUST00000114379 1318 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Col9a1Q05722 Gm44618-201ENSMUST00000208431 2262 ntTSL 3 BASIC16.36■□□□□ 0.21
Col9a1Q05722 B3gnt9-201ENSMUST00000093217 2325 ntAPPRIS P1 TSL 2 BASIC16.36■□□□□ 0.21
Col9a1Q05722 Pink1-202ENSMUST00000105816 1465 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Col9a1Q05722 Jdp2-202ENSMUST00000171754 1559 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Col9a1Q05722 1700008O03Rik-201ENSMUST00000107933 913 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Col9a1Q05722 Il11ra2-201ENSMUST00000108006 1299 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Col9a1Q05722 Gm6912-201ENSMUST00000117218 544 ntBASIC16.36■□□□□ 0.21
Col9a1Q05722 1810032O08Rik-206ENSMUST00000144049 966 ntAPPRIS P5 TSL 2 BASIC16.36■□□□□ 0.21
Col9a1Q05722 Gm44335-201ENSMUST00000196879 141 ntBASIC16.36■□□□□ 0.21
Col9a1Q05722 Gm44297-201ENSMUST00000198304 141 ntBASIC16.36■□□□□ 0.21
Col9a1Q05722 Gm44346-201ENSMUST00000198851 141 ntBASIC16.36■□□□□ 0.21
Col9a1Q05722 Gm7506-201ENSMUST00000207758 815 ntBASIC16.36■□□□□ 0.21
Col9a1Q05722 AC171004.1-201ENSMUST00000221723 664 ntTSL 3 BASIC16.36■□□□□ 0.21
Col9a1Q05722 Ccl11-201ENSMUST00000000342 1082 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Col9a1Q05722 Chchd2-201ENSMUST00000094280 915 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Col9a1Q05722 Wdr41-202ENSMUST00000159647 2289 ntTSL 5 BASIC16.36■□□□□ 0.21
Col9a1Q05722 Wdr41-206ENSMUST00000167155 2289 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Col9a1Q05722 Mmp11-201ENSMUST00000000924 2288 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Col9a1Q05722 Trim33-202ENSMUST00000106860 5025 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
Retrieved 100 of 76,532 protein–RNA pairs in 39.8 ms