Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 Helt-201ENSMUST00000058636 1541 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Nkx3-1P97436 Map4k5-210ENSMUST00000171211 4334 ntTSL 2 BASIC14.48□□□□□ -0.09
Nkx3-1P97436 Tulp3-205ENSMUST00000157005 1053 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
Nkx3-1P97436 Rpp40-202ENSMUST00000174230 1053 ntTSL 5 BASIC14.48□□□□□ -0.09
Nkx3-1P97436 AC124569.2-201ENSMUST00000225998 818 ntBASIC14.48□□□□□ -0.09
Nkx3-1P97436 Mzt1-203ENSMUST00000227948 952 ntBASIC14.48□□□□□ -0.09
Nkx3-1P97436 Gm9857-201ENSMUST00000050914 393 ntAPPRIS P1 BASIC14.48□□□□□ -0.09
Nkx3-1P97436 Nf2-205ENSMUST00000109910 4720 ntAPPRIS P3 TSL 1 (best) BASIC14.48□□□□□ -0.09
Nkx3-1P97436 Exoc3l2-202ENSMUST00000137613 4016 ntAPPRIS P1 TSL 5 BASIC14.48□□□□□ -0.09
Nkx3-1P97436 Slc6a17-208ENSMUST00000169449 6322 ntAPPRIS ALT1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Nkx3-1P97436 Slc6a17-201ENSMUST00000029499 6308 ntAPPRIS P3 TSL 1 (best) BASIC14.48□□□□□ -0.09
Nkx3-1P97436 Ppp2r2d-207ENSMUST00000155672 1938 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
Nkx3-1P97436 Irf5-205ENSMUST00000167252 1693 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
Nkx3-1P97436 Fuz-201ENSMUST00000071207 1698 ntAPPRIS P2 TSL 1 (best) BASIC14.48□□□□□ -0.09
Nkx3-1P97436 Tm6sf2-201ENSMUST00000049197 1418 ntAPPRIS P3 TSL 1 (best) BASIC14.48□□□□□ -0.09
Nkx3-1P97436 Hnrnpu-201ENSMUST00000037748 7640 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Nkx3-1P97436 Npas3-201ENSMUST00000101432 5879 ntAPPRIS P2 TSL 1 (best) BASIC14.48□□□□□ -0.09
Nkx3-1P97436 Glmn-201ENSMUST00000078021 2015 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Nkx3-1P97436 Kat14-208ENSMUST00000147747 3299 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
Nkx3-1P97436 Zfp697-202ENSMUST00000178372 4703 ntAPPRIS P1 TSL 5 BASIC14.47□□□□□ -0.09
Nkx3-1P97436 Farsa-202ENSMUST00000109754 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Nkx3-1P97436 Vps4a-201ENSMUST00000034388 2178 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Nkx3-1P97436 Nrros-203ENSMUST00000115165 2389 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
Nkx3-1P97436 Espnl-201ENSMUST00000088904 5445 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Nkx3-1P97436 Nat8f3-202ENSMUST00000168531 1347 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Nkx3-1P97436 Zkscan4-202ENSMUST00000225845 1506 ntBASIC14.47□□□□□ -0.09
Nkx3-1P97436 Igsf23-201ENSMUST00000043440 1908 ntAPPRIS P2 TSL 1 (best) BASIC14.47□□□□□ -0.09
Nkx3-1P97436 Bmp2k-201ENSMUST00000035635 7387 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Nkx3-1P97436 Rnf44-204ENSMUST00000125871 4292 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Nkx3-1P97436 Mff-202ENSMUST00000078332 1894 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Nkx3-1P97436 Btn1a1-202ENSMUST00000110434 1077 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
Nkx3-1P97436 Adal-203ENSMUST00000110662 1231 ntTSL 5 BASIC14.47□□□□□ -0.09
Nkx3-1P97436 Gm13524-201ENSMUST00000125869 662 ntTSL 3 BASIC14.47□□□□□ -0.09
Nkx3-1P97436 Bvht-202ENSMUST00000183087 588 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
Nkx3-1P97436 Gzme-201ENSMUST00000089549 916 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Nkx3-1P97436 Lmtk2-201ENSMUST00000041804 8114 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Nkx3-1P97436 Glra1-201ENSMUST00000075603 2037 ntAPPRIS ALT1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Nkx3-1P97436 Met-203ENSMUST00000115443 6809 ntAPPRIS P1 TSL 5 BASIC14.47□□□□□ -0.09
Nkx3-1P97436 Hs6st1-201ENSMUST00000088174 3719 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Nkx3-1P97436 Atp2a2-201ENSMUST00000031423 4486 ntAPPRIS P4 TSL 1 (best) BASIC14.47□□□□□ -0.09
Nkx3-1P97436 H2-DMb1-201ENSMUST00000114232 1404 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Nkx3-1P97436 Matn4-204ENSMUST00000109359 2179 ntTSL 5 BASIC14.47□□□□□ -0.09
Nkx3-1P97436 Icam5-201ENSMUST00000019616 2947 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Nkx3-1P97436 Ust-201ENSMUST00000061601 4228 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Nkx3-1P97436 Dap-201ENSMUST00000044524 1555 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Nkx3-1P97436 Gm15408-201ENSMUST00000124198 1379 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
Nkx3-1P97436 Lman2l-202ENSMUST00000115011 2290 ntTSL 5 BASIC14.46□□□□□ -0.09
Nkx3-1P97436 Map7-201ENSMUST00000020173 4252 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.09
Nkx3-1P97436 Smim15-205ENSMUST00000225972 2097 ntAPPRIS P1 BASIC14.46□□□□□ -0.09
Nkx3-1P97436 5830415G21Rik-201ENSMUST00000192543 1332 ntBASIC14.46□□□□□ -0.09
Nkx3-1P97436 Nr1d2-201ENSMUST00000090543 4663 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Nkx3-1P97436 Rsph6a-201ENSMUST00000035521 2354 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Nkx3-1P97436 Otud5-201ENSMUST00000033494 4259 ntAPPRIS P3 TSL 1 (best) BASIC14.46□□□□□ -0.09
Nkx3-1P97436 Gm43702-201ENSMUST00000198772 2546 ntBASIC14.46□□□□□ -0.09
Nkx3-1P97436 Sept10-203ENSMUST00000220156 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.09
Nkx3-1P97436 Vgf-204ENSMUST00000190827 2834 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Nkx3-1P97436 Lcn12-202ENSMUST00000114245 619 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.09
Nkx3-1P97436 Gm12895-201ENSMUST00000122214 226 ntBASIC14.46□□□□□ -0.09
Nkx3-1P97436 Gtf3c2-202ENSMUST00000200871 318 ntTSL 3 BASIC14.46□□□□□ -0.09
Nkx3-1P97436 Mrpl36-202ENSMUST00000221730 717 ntAPPRIS P1 TSL 3 BASIC14.46□□□□□ -0.09
Nkx3-1P97436 Il17b-201ENSMUST00000025471 692 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Nkx3-1P97436 Sult2b1-201ENSMUST00000075571 1193 ntAPPRIS P2 TSL 1 (best) BASIC14.46□□□□□ -0.09
Nkx3-1P97436 Ocel1-203ENSMUST00000110052 5285 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
Nkx3-1P97436 Trpc4ap-202ENSMUST00000103140 3091 ntAPPRIS P3 TSL 1 (best) BASIC14.46□□□□□ -0.09
Nkx3-1P97436 Cog6-204ENSMUST00000193432 2078 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
Nkx3-1P97436 Gm13032-201ENSMUST00000151848 2001 ntTSL 1 (best) BASIC14.46□□□□□ -0.1
Nkx3-1P97436 Ager-201ENSMUST00000015596 1370 ntAPPRIS P3 TSL 1 (best) BASIC14.46□□□□□ -0.1
Nkx3-1P97436 3110002H16Rik-201ENSMUST00000025276 2170 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
Nkx3-1P97436 Gm16897-201ENSMUST00000180780 2492 ntTSL 1 (best) BASIC14.46□□□□□ -0.1
Nkx3-1P97436 Tmem229a-201ENSMUST00000127247 5157 ntAPPRIS P1 BASIC14.45□□□□□ -0.1
Nkx3-1P97436 Snx14-205ENSMUST00000173011 2238 ntTSL 5 BASIC14.45□□□□□ -0.1
Nkx3-1P97436 Zfp768-201ENSMUST00000060783 2356 ntAPPRIS P2 TSL 1 (best) BASIC14.45□□□□□ -0.1
Nkx3-1P97436 Nat9-203ENSMUST00000103040 1204 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Nkx3-1P97436 Nat9-204ENSMUST00000103041 953 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
Nkx3-1P97436 Gpr142-202ENSMUST00000106584 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
Nkx3-1P97436 Gm12359-202ENSMUST00000141696 713 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Nkx3-1P97436 Gm12359-203ENSMUST00000153181 680 ntTSL 3 BASIC14.45□□□□□ -0.1
Nkx3-1P97436 4933434E20Rik-209ENSMUST00000162114 1411 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Nkx3-1P97436 Syncrip-205ENSMUST00000173801 2944 ntAPPRIS ALT1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Nkx3-1P97436 Erdr1-203ENSMUST00000179077 887 ntAPPRIS ALT2 TSL 5 BASIC14.45□□□□□ -0.1
Nkx3-1P97436 Gm26592-201ENSMUST00000180870 1730 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Nkx3-1P97436 Gm26661-201ENSMUST00000181025 471 ntAPPRIS P1 BASIC14.45□□□□□ -0.1
Nkx3-1P97436 Gm28659-201ENSMUST00000188013 759 ntBASIC14.45□□□□□ -0.1
Nkx3-1P97436 Gm8969-201ENSMUST00000199694 526 ntBASIC14.45□□□□□ -0.1
Nkx3-1P97436 Gpr142-201ENSMUST00000045319 1098 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
Nkx3-1P97436 Crhbp-201ENSMUST00000045583 1701 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Nkx3-1P97436 Tmem198-201ENSMUST00000050899 2456 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Nkx3-1P97436 Fam171b-201ENSMUST00000051454 5614 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Nkx3-1P97436 Arid3b-202ENSMUST00000098686 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
Nkx3-1P97436 Sorcs3-201ENSMUST00000078880 5634 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Nkx3-1P97436 Ybx2-202ENSMUST00000108601 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
Nkx3-1P97436 Stk35-202ENSMUST00000166282 5445 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Nkx3-1P97436 C1ql3-201ENSMUST00000061545 2535 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Nkx3-1P97436 Zfc3h1-201ENSMUST00000036044 6957 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Nkx3-1P97436 Fam222a-201ENSMUST00000043650 2930 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Nkx3-1P97436 Zbtb8a-201ENSMUST00000030610 2321 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Nkx3-1P97436 Etv5-201ENSMUST00000079601 3975 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Nkx3-1P97436 Adgrv1-207ENSMUST00000128585 2580 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Nkx3-1P97436 Cbx2-201ENSMUST00000026662 3807 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Nkx3-1P97436 Cux1-206ENSMUST00000176172 4882 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
Retrieved 100 of 76,532 protein–RNA pairs in 48.1 ms