Protein–RNA interactions for Protein: P70390

Shox2, Short stature homeobox protein 2, mousemouse

Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shox2P70390 Ado-201ENSMUST00000075686 4445 ntAPPRIS P1 BASIC16.64■□□□□ 0.25
Shox2P70390 Atp11a-202ENSMUST00000091237 7443 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
Shox2P70390 Snx8-204ENSMUST00000196130 2547 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
Shox2P70390 Anks1b-202ENSMUST00000099366 2549 ntTSL 5 BASIC16.64■□□□□ 0.25
Shox2P70390 Arhgef2-202ENSMUST00000107510 4390 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
Shox2P70390 Trmt1-201ENSMUST00000001974 2567 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
Shox2P70390 Tcf3-201ENSMUST00000020377 2842 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
Shox2P70390 Rpn2-201ENSMUST00000029171 2621 ntTSL 5 BASIC16.64■□□□□ 0.25
Shox2P70390 Grin3b-201ENSMUST00000045085 3283 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Shox2P70390 Washc1-202ENSMUST00000116556 2887 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Shox2P70390 Ofd1-201ENSMUST00000049501 4453 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Shox2P70390 Kcnn1-208ENSMUST00000212611 2528 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
Shox2P70390 Mrpl9-202ENSMUST00000196143 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
Shox2P70390 Larp4b-201ENSMUST00000091829 5720 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Shox2P70390 Trp73-203ENSMUST00000105643 1916 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
Shox2P70390 Ttc6-203ENSMUST00000172939 5782 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
Shox2P70390 Dcaf17-201ENSMUST00000064141 1905 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Shox2P70390 Cdc42se2-201ENSMUST00000064104 3069 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Shox2P70390 Stxbp3-201ENSMUST00000102621 2419 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Shox2P70390 Ctnnal1-202ENSMUST00000107612 850 ntTSL 3 BASIC16.63■□□□□ 0.25
Shox2P70390 2700033N17Rik-201ENSMUST00000140185 721 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Shox2P70390 Gm5297-201ENSMUST00000198555 1171 ntBASIC16.63■□□□□ 0.25
Shox2P70390 Cebpg-201ENSMUST00000070191 914 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
Shox2P70390 Gprc5b-201ENSMUST00000008878 4518 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
Shox2P70390 Mrpl12-201ENSMUST00000043627 1316 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Shox2P70390 Dand5-201ENSMUST00000065539 1584 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Shox2P70390 Trim50-201ENSMUST00000065785 1803 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
Shox2P70390 Cdyl2-201ENSMUST00000109102 2411 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Shox2P70390 Slc45a4-204ENSMUST00000132607 2457 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Shox2P70390 Pbk-201ENSMUST00000022612 1720 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Shox2P70390 Map3k5-201ENSMUST00000095806 5450 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
Shox2P70390 Serf2-204ENSMUST00000139253 3056 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Shox2P70390 Svip-201ENSMUST00000098414 3053 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Shox2P70390 Dach1-202ENSMUST00000071533 5219 ntAPPRIS P4 TSL 1 (best) BASIC16.62■□□□□ 0.25
Shox2P70390 Ankra2-201ENSMUST00000022164 1755 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Shox2P70390 Ptgs1-201ENSMUST00000062069 2867 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Shox2P70390 Shox2-202ENSMUST00000162060 1537 ntTSL 3 BASIC16.62■□□□□ 0.25
Shox2P70390 Col11a2-203ENSMUST00000114255 5722 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
Shox2P70390 Ccdc43-201ENSMUST00000092569 2366 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
Shox2P70390 St8sia5-201ENSMUST00000075290 1841 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Shox2P70390 Thap8-201ENSMUST00000014072 1182 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
Shox2P70390 Rexo2-208ENSMUST00000216470 454 ntTSL 3 BASIC16.62■□□□□ 0.25
Shox2P70390 Kctd17-201ENSMUST00000089414 1180 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
Shox2P70390 Aig1-205ENSMUST00000162610 1554 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Shox2P70390 Tprn-201ENSMUST00000114336 2787 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Shox2P70390 Akirin1-201ENSMUST00000102636 3052 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Shox2P70390 Rnf14-203ENSMUST00000171461 3351 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Shox2P70390 Cnih3-201ENSMUST00000027795 2668 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Shox2P70390 Mllt1-201ENSMUST00000025053 3608 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Shox2P70390 Rffl-202ENSMUST00000071152 3633 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Shox2P70390 Celf1-206ENSMUST00000111451 4678 ntAPPRIS ALT1 TSL 5 BASIC16.61■□□□□ 0.25
Shox2P70390 Strn4-202ENSMUST00000108495 3082 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
Shox2P70390 Evc-202ENSMUST00000114148 2119 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
Shox2P70390 Gm14317-201ENSMUST00000151754 1464 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Shox2P70390 Erg-207ENSMUST00000171646 1519 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Shox2P70390 Wnt10b-207ENSMUST00000228594 1510 ntAPPRIS P1 BASIC16.61■□□□□ 0.25
Shox2P70390 Ogg1-201ENSMUST00000032406 1549 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Shox2P70390 Rnf169-201ENSMUST00000080817 7147 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
Shox2P70390 Ccdc166-202ENSMUST00000183130 1563 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
Shox2P70390 Foxi3-202ENSMUST00000163089 1278 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
Shox2P70390 Casd1-204ENSMUST00000181734 1063 ntTSL 5 BASIC16.61■□□□□ 0.25
Shox2P70390 Foxi3-201ENSMUST00000069634 1206 ntAPPRIS P2 TSL 5 BASIC16.61■□□□□ 0.25
Shox2P70390 Hist1h2ag-201ENSMUST00000091741 485 ntAPPRIS P1 BASIC16.61■□□□□ 0.25
Shox2P70390 Gm13509-201ENSMUST00000119733 1308 ntBASIC16.61■□□□□ 0.25
Shox2P70390 Txnrd3-202ENSMUST00000101171 2494 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Shox2P70390 Mau2-204ENSMUST00000212308 2887 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
Shox2P70390 Hist3h2a-201ENSMUST00000108817 2146 ntAPPRIS P1 BASIC16.61■□□□□ 0.25
Shox2P70390 Gypc-203ENSMUST00000174459 2180 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
Shox2P70390 Luc7l2-208ENSMUST00000161538 4253 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Shox2P70390 Sf1-203ENSMUST00000113488 2282 ntTSL 5 BASIC16.61■□□□□ 0.25
Shox2P70390 Kif12-201ENSMUST00000030042 2250 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
Shox2P70390 Tbc1d9b-202ENSMUST00000101270 5213 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
Shox2P70390 Rhobtb1-202ENSMUST00000067908 4422 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Shox2P70390 March8-201ENSMUST00000079012 4450 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Shox2P70390 Perp-201ENSMUST00000019998 1952 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Shox2P70390 Hnrnpm-205ENSMUST00000139302 2428 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Shox2P70390 Trim14-202ENSMUST00000102924 1582 ntTSL 2 BASIC16.6■□□□□ 0.25
Shox2P70390 Artn-202ENSMUST00000097913 1568 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Shox2P70390 Klhl33-201ENSMUST00000164415 1602 ntTSL 5 BASIC16.6■□□□□ 0.25
Shox2P70390 Ttc32-202ENSMUST00000219470 1645 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Shox2P70390 Gm26592-201ENSMUST00000180870 1730 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Shox2P70390 Trim39-203ENSMUST00000113706 3204 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Shox2P70390 Usb1-201ENSMUST00000034245 1758 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Shox2P70390 Zmynd19-201ENSMUST00000028350 3903 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Shox2P70390 Rmnd5b-201ENSMUST00000001081 1946 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Shox2P70390 Smarcd1-201ENSMUST00000023759 3153 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Shox2P70390 Plekha4-206ENSMUST00000211155 2044 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
Shox2P70390 Tcf3-203ENSMUST00000105339 2096 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
Shox2P70390 Dmc1-201ENSMUST00000023065 2192 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Shox2P70390 Mrpl9-201ENSMUST00000029786 1612 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
Shox2P70390 Gm10654-201ENSMUST00000098653 1633 ntBASIC16.59■□□□□ 0.25
Shox2P70390 Bfsp2-201ENSMUST00000124310 1662 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Shox2P70390 Gm12866-201ENSMUST00000128998 1671 ntTSL 2 BASIC16.59■□□□□ 0.25
Shox2P70390 Ush1c-208ENSMUST00000177212 1696 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
Shox2P70390 Gata5os-201ENSMUST00000069943 1678 ntTSL 2 BASIC16.59■□□□□ 0.25
Shox2P70390 Hdhd2-202ENSMUST00000097521 1716 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
Shox2P70390 Tnrc6c-202ENSMUST00000106344 8847 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
Shox2P70390 Cyb561d2-201ENSMUST00000041459 1786 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Shox2P70390 C430049E01Rik-201ENSMUST00000207913 1820 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Shox2P70390 Fam221a-201ENSMUST00000060561 2730 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
Retrieved 100 of 76,532 protein–RNA pairs in 22.8 ms