Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 Axin1-202ENSMUST00000118904 2833 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
Rfx1P48377 Cbl-204ENSMUST00000205968 2809 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
Rfx1P48377 Ube2r2-201ENSMUST00000040008 3600 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Rfx1P48377 Ckap4-201ENSMUST00000053871 3089 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Rfx1P48377 Tsc22d2-203ENSMUST00000199164 4659 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
Rfx1P48377 Mapk14-201ENSMUST00000004990 3547 ntAPPRIS ALT1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Rfx1P48377 Mapk14-202ENSMUST00000062694 3547 ntAPPRIS P3 TSL 1 (best) BASIC20.09■□□□□ 0.81
Rfx1P48377 Mtcp1-201ENSMUST00000033542 1592 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Rfx1P48377 Emc8-201ENSMUST00000034277 4942 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Rfx1P48377 Ppp1r36-201ENSMUST00000063977 1515 ntAPPRIS P1 TSL 5 BASIC20.09■□□□□ 0.81
Rfx1P48377 Ankrd23-201ENSMUST00000054665 1964 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Rfx1P48377 Bex3-202ENSMUST00000113112 826 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
Rfx1P48377 Gm11249-201ENSMUST00000117071 859 ntBASIC20.09■□□□□ 0.81
Rfx1P48377 Gm36210-201ENSMUST00000210663 1279 ntAPPRIS P1 TSL 5 BASIC20.09■□□□□ 0.81
Rfx1P48377 Gucd1-211ENSMUST00000219774 806 ntTSL 3 BASIC20.09■□□□□ 0.81
Rfx1P48377 AC166341.7-201ENSMUST00000221698 126 ntBASIC20.09■□□□□ 0.81
Rfx1P48377 Exosc3-201ENSMUST00000030003 1077 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Rfx1P48377 Ogfr-201ENSMUST00000029087 2449 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Rfx1P48377 Ubr3-202ENSMUST00000112251 8081 ntAPPRIS ALT2 TSL 5 BASIC20.09■□□□□ 0.81
Rfx1P48377 Myef2-201ENSMUST00000067780 2999 ntAPPRIS ALT2 TSL 5 BASIC20.09■□□□□ 0.81
Rfx1P48377 Trabd-206ENSMUST00000169891 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
Rfx1P48377 Naa50-204ENSMUST00000161326 4487 ntAPPRIS ALT1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Rfx1P48377 BC029722-201ENSMUST00000124586 1615 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Rfx1P48377 Anks6-201ENSMUST00000084616 3552 ntAPPRIS P1 TSL 5 BASIC20.09■□□□□ 0.81
Rfx1P48377 Ephb4-203ENSMUST00000111055 4296 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.81
Rfx1P48377 AL590614.2-201ENSMUST00000225374 1937 ntBASIC20.08■□□□□ 0.81
Rfx1P48377 Sgsm2-201ENSMUST00000057631 4743 ntAPPRIS P2 TSL 1 (best) BASIC20.08■□□□□ 0.81
Rfx1P48377 Bnip2-201ENSMUST00000034754 2464 ntAPPRIS P4 TSL 1 (best) BASIC20.08■□□□□ 0.81
Rfx1P48377 Sept8-201ENSMUST00000108987 4436 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.81
Rfx1P48377 Gm12896-201ENSMUST00000118430 226 ntBASIC20.08■□□□□ 0.81
Rfx1P48377 Gm27405-201ENSMUST00000184201 112 ntBASIC20.08■□□□□ 0.81
Rfx1P48377 4930554G22Rik-201ENSMUST00000196102 686 ntBASIC20.08■□□□□ 0.81
Rfx1P48377 Gm45890-202ENSMUST00000212188 1052 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
Rfx1P48377 Grp-201ENSMUST00000025395 862 ntAPPRIS P2 TSL 1 (best) BASIC20.08■□□□□ 0.81
Rfx1P48377 Pi4k2b-202ENSMUST00000031082 3034 ntAPPRIS ALT2 TSL 2 BASIC20.08■□□□□ 0.8
Rfx1P48377 Aqp2-201ENSMUST00000023752 1416 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
Rfx1P48377 Cdh2-201ENSMUST00000025166 4843 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
Rfx1P48377 Rffl-206ENSMUST00000108173 3489 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
Rfx1P48377 Ubap1-202ENSMUST00000108060 2514 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
Rfx1P48377 Atp5a1-201ENSMUST00000026495 2471 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
Rfx1P48377 Ilk-212ENSMUST00000163389 1749 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Rfx1P48377 CT010478.1-201ENSMUST00000220747 2787 ntBASIC20.07■□□□□ 0.8
Rfx1P48377 Fam71e1-202ENSMUST00000205359 1307 ntAPPRIS ALT2 TSL 2 BASIC20.07■□□□□ 0.8
Rfx1P48377 Pola2-202ENSMUST00000165143 2397 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
Rfx1P48377 Gm16759-204ENSMUST00000191455 4272 ntTSL 5 BASIC20.07■□□□□ 0.8
Rfx1P48377 Hyls1-201ENSMUST00000115110 1973 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Rfx1P48377 Gm9821-201ENSMUST00000178895 1953 ntAPPRIS P1 BASIC20.07■□□□□ 0.8
Rfx1P48377 Cerkl-205ENSMUST00000143974 1623 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Rfx1P48377 Anapc7-203ENSMUST00000122010 2950 ntAPPRIS P1 TSL 5 BASIC20.07■□□□□ 0.8
Rfx1P48377 Gm42545-201ENSMUST00000202755 922 ntBASIC20.07■□□□□ 0.8
Rfx1P48377 Wasl-202ENSMUST00000041737 1298 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
Rfx1P48377 Rasal2-201ENSMUST00000078308 10047 ntAPPRIS P2 TSL 1 (best) BASIC20.07■□□□□ 0.8
Rfx1P48377 Fubp3-202ENSMUST00000113482 3268 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Rfx1P48377 Taf5l-201ENSMUST00000093039 2912 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Rfx1P48377 Diaph2-201ENSMUST00000037854 3742 ntAPPRIS P2 TSL 1 (best) BASIC20.07■□□□□ 0.8
Rfx1P48377 Dpm1-209ENSMUST00000154111 2293 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Rfx1P48377 Pgap3-202ENSMUST00000090827 2419 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Rfx1P48377 Lhx6-208ENSMUST00000148852 1481 ntTSL 5 BASIC20.06■□□□□ 0.8
Rfx1P48377 Cadps2-202ENSMUST00000069074 3935 ntTSL 5 BASIC20.06■□□□□ 0.8
Rfx1P48377 Cacna1a-201ENSMUST00000121390 7926 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
Rfx1P48377 Hif3a-201ENSMUST00000037762 2206 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
Rfx1P48377 Trmt2a-203ENSMUST00000115640 2367 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
Rfx1P48377 Plxdc1-202ENSMUST00000107564 619 ntTSL 2 BASIC20.06■□□□□ 0.8
Rfx1P48377 1700003N22Rik-201ENSMUST00000194834 808 ntBASIC20.06■□□□□ 0.8
Rfx1P48377 Tspan2-203ENSMUST00000196611 682 ntTSL 5 BASIC20.06■□□□□ 0.8
Rfx1P48377 Trim45-202ENSMUST00000094048 1815 ntTSL 5 BASIC20.06■□□□□ 0.8
Rfx1P48377 Mff-212ENSMUST00000162003 2087 ntTSL 5 BASIC20.06■□□□□ 0.8
Rfx1P48377 Phf7-201ENSMUST00000022459 2084 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Rfx1P48377 Snx30-201ENSMUST00000030080 7314 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Rfx1P48377 Sufu-202ENSMUST00000111867 1747 ntAPPRIS ALT1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Rfx1P48377 Rnf168-203ENSMUST00000171474 4460 ntAPPRIS P2 TSL 1 (best) BASIC20.05■□□□□ 0.8
Rfx1P48377 Pi4k2a-201ENSMUST00000066778 3771 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Rfx1P48377 Cdk12-203ENSMUST00000107539 5912 ntAPPRIS ALT2 TSL 5 BASIC20.05■□□□□ 0.8
Rfx1P48377 Tmc6-202ENSMUST00000103025 1279 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
Rfx1P48377 Knstrn-202ENSMUST00000110842 925 ntAPPRIS ALT2 TSL 3 BASIC20.05■□□□□ 0.8
Rfx1P48377 D330023K18Rik-201ENSMUST00000133550 920 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
Rfx1P48377 Tpsg1-204ENSMUST00000160920 867 ntTSL 3 BASIC20.05■□□□□ 0.8
Rfx1P48377 Gm30085-201ENSMUST00000209694 594 ntTSL 3 BASIC20.05■□□□□ 0.8
Rfx1P48377 Bfsp2-201ENSMUST00000124310 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Rfx1P48377 Fam120c-201ENSMUST00000073364 5463 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Rfx1P48377 Sfrp4-201ENSMUST00000002883 1764 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Rfx1P48377 Nanp-201ENSMUST00000066640 1394 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Rfx1P48377 Git2-215ENSMUST00000178440 4944 ntTSL 5 BASIC20.05■□□□□ 0.8
Rfx1P48377 Git2-201ENSMUST00000043283 4938 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
Rfx1P48377 Arhgef9-216ENSMUST00000197206 2227 ntTSL 5 BASIC20.04■□□□□ 0.8
Rfx1P48377 Fbxl15-201ENSMUST00000026256 1348 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Rfx1P48377 Klhdc10-201ENSMUST00000068240 3951 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Rfx1P48377 Zfp219-212ENSMUST00000228580 2812 ntAPPRIS ALT2 BASIC20.04■□□□□ 0.8
Rfx1P48377 Fam72a-201ENSMUST00000068613 2191 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Rfx1P48377 Ly6e-201ENSMUST00000051698 2281 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Rfx1P48377 Hsd3b2-201ENSMUST00000107021 1788 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Rfx1P48377 Chchd4-201ENSMUST00000040835 3472 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Rfx1P48377 Agfg1-208ENSMUST00000190052 2991 ntTSL 5 BASIC20.04■□□□□ 0.8
Rfx1P48377 Yipf4-201ENSMUST00000024873 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Rfx1P48377 Cdk2ap2-201ENSMUST00000025779 1080 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Rfx1P48377 Tulp1-202ENSMUST00000114794 1738 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Rfx1P48377 Rgl3-201ENSMUST00000045726 2543 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Rfx1P48377 Pou2f2-202ENSMUST00000108413 1599 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Rfx1P48377 Arid3c-202ENSMUST00000150809 1327 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
Rfx1P48377 Fmnl3-201ENSMUST00000081224 4137 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
Retrieved 100 of 76,532 protein–RNA pairs in 41.7 ms