Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Tmem62-201ENSMUST00000067582 2921 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Col1a1P11087 4930503L19Rik-201ENSMUST00000067556 2291 ntAPPRIS P2 TSL 1 (best) BASIC19.6■□□□□ 0.73
Col1a1P11087 Cxcl10-202ENSMUST00000118006 1353 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
Col1a1P11087 Irx5-201ENSMUST00000034184 2450 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Col1a1P11087 Itgb1bp1-201ENSMUST00000076260 1874 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Col1a1P11087 Gm16194-203ENSMUST00000141239 362 ntTSL 3 BASIC19.6■□□□□ 0.73
Col1a1P11087 Gm6550-201ENSMUST00000187574 993 ntBASIC19.6■□□□□ 0.73
Col1a1P11087 Gm7506-201ENSMUST00000207758 815 ntBASIC19.6■□□□□ 0.73
Col1a1P11087 Lrfn4-202ENSMUST00000113822 2918 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Col1a1P11087 Sult2b1-204ENSMUST00000209739 1858 ntAPPRIS ALT2 TSL 5 BASIC19.59■□□□□ 0.73
Col1a1P11087 Il10rb-201ENSMUST00000023691 1850 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Col1a1P11087 Tmed9-201ENSMUST00000109905 1420 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Col1a1P11087 Grk2-202ENSMUST00000088737 3376 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Col1a1P11087 Tmem198-202ENSMUST00000113575 2185 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Col1a1P11087 Cnn2-202ENSMUST00000105374 926 ntTSL 5 BASIC19.59■□□□□ 0.73
Col1a1P11087 Pgam1-ps1-201ENSMUST00000119107 749 ntBASIC19.59■□□□□ 0.73
Col1a1P11087 Gm12260-201ENSMUST00000122447 411 ntBASIC19.59■□□□□ 0.73
Col1a1P11087 1300002E11Rik-207ENSMUST00000211443 767 ntTSL 5 BASIC19.59■□□□□ 0.73
Col1a1P11087 5830454E08Rik-202ENSMUST00000213974 744 ntBASIC19.59■□□□□ 0.73
Col1a1P11087 AC154757.1-201ENSMUST00000228289 336 ntBASIC19.59■□□□□ 0.73
Col1a1P11087 Sigirr-203ENSMUST00000209294 1612 ntAPPRIS P2 TSL 1 (best) BASIC19.59■□□□□ 0.73
Col1a1P11087 Jam2-201ENSMUST00000098407 1998 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
Col1a1P11087 Ppp3cb-206ENSMUST00000161989 2322 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
Col1a1P11087 Dirc2-201ENSMUST00000023554 5395 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Col1a1P11087 Il11ra1-202ENSMUST00000108040 1837 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.73
Col1a1P11087 Dleu2-208ENSMUST00000182768 1442 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
Col1a1P11087 2310002F09Rik-201ENSMUST00000181454 1607 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
Col1a1P11087 Apbb1-205ENSMUST00000187057 1630 ntTSL 5 BASIC19.58■□□□□ 0.73
Col1a1P11087 Prss22-201ENSMUST00000041649 1323 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
Col1a1P11087 Ppp2r1b-204ENSMUST00000174628 2195 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
Col1a1P11087 Gm23935-201ENSMUST00000102303 57 ntBASIC19.58■□□□□ 0.72
Col1a1P11087 Gm24270-201ENSMUST00000102326 57 ntBASIC19.58■□□□□ 0.72
Col1a1P11087 Nt5c-202ENSMUST00000106530 836 ntTSL 3 BASIC19.58■□□□□ 0.72
Col1a1P11087 1700008O03Rik-201ENSMUST00000107933 913 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Col1a1P11087 Gm14494-201ENSMUST00000118786 435 ntBASIC19.58■□□□□ 0.72
Col1a1P11087 Tex30-213ENSMUST00000156392 1122 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.72
Col1a1P11087 Gm24245-201ENSMUST00000157318 57 ntBASIC19.58■□□□□ 0.72
Col1a1P11087 Ankrd65-202ENSMUST00000165000 1140 ntAPPRIS ALT2 TSL 5 BASIC19.58■□□□□ 0.72
Col1a1P11087 Rbm14-203ENSMUST00000180008 370 ntTSL 5 BASIC19.58■□□□□ 0.72
Col1a1P11087 Aldoa-ps3-201ENSMUST00000217558 306 ntBASIC19.58■□□□□ 0.72
Col1a1P11087 Commd5-201ENSMUST00000068407 1037 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Col1a1P11087 Rogdi-202ENSMUST00000090453 652 ntTSL 5 BASIC19.58■□□□□ 0.72
Col1a1P11087 Ran-201ENSMUST00000031383 2377 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Col1a1P11087 Fam109a-201ENSMUST00000056654 2368 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Col1a1P11087 Mettl27-205ENSMUST00000111221 1796 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
Col1a1P11087 Zranb1-202ENSMUST00000106157 5008 ntAPPRIS P2 TSL 5 BASIC19.58■□□□□ 0.72
Col1a1P11087 Sirt1-207ENSMUST00000177694 3353 ntTSL 5 BASIC19.58■□□□□ 0.72
Col1a1P11087 Gpat3-203ENSMUST00000112887 3059 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Col1a1P11087 Rcan3-201ENSMUST00000030606 5111 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Col1a1P11087 Mzt1-201ENSMUST00000042662 2240 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Col1a1P11087 AL590614.2-201ENSMUST00000225374 1937 ntBASIC19.57■□□□□ 0.72
Col1a1P11087 Atad3a-201ENSMUST00000030903 2413 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Col1a1P11087 Podxl-201ENSMUST00000026698 5379 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Col1a1P11087 Atmin-201ENSMUST00000109099 4877 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Col1a1P11087 Usb1-201ENSMUST00000034245 1758 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Col1a1P11087 Gm4995-201ENSMUST00000117247 432 ntBASIC19.57■□□□□ 0.72
Col1a1P11087 Gm37584-201ENSMUST00000193595 1290 ntBASIC19.57■□□□□ 0.72
Col1a1P11087 AC164441.1-201ENSMUST00000221369 1004 ntTSL 5 BASIC19.57■□□□□ 0.72
Col1a1P11087 AC154222.1-201ENSMUST00000223882 475 ntBASIC19.57■□□□□ 0.72
Col1a1P11087 AC154621.1-201ENSMUST00000226155 1119 ntBASIC19.57■□□□□ 0.72
Col1a1P11087 AL731706.1-201ENSMUST00000227806 944 ntAPPRIS ALT2 BASIC19.57■□□□□ 0.72
Col1a1P11087 A830031A19Rik-201ENSMUST00000068360 757 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Col1a1P11087 AK157302-201ENSMUST00000104942 1924 ntAPPRIS P1 BASIC19.57■□□□□ 0.72
Col1a1P11087 Slc39a1-201ENSMUST00000015467 2364 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Col1a1P11087 Cend1-201ENSMUST00000084436 1672 ntAPPRIS P1 TSL 5 BASIC19.57■□□□□ 0.72
Col1a1P11087 Fam57b-201ENSMUST00000079423 2328 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Col1a1P11087 Isl2-201ENSMUST00000034869 1854 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Col1a1P11087 Ric3-202ENSMUST00000120876 1633 ntAPPRIS ALT1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Col1a1P11087 Ndufa10-201ENSMUST00000027478 2020 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Col1a1P11087 Mrpl49-201ENSMUST00000007482 1722 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Col1a1P11087 Nkapl-201ENSMUST00000068235 1463 ntAPPRIS P1 BASIC19.56■□□□□ 0.72
Col1a1P11087 Gm17114-201ENSMUST00000164716 511 ntTSL 3 BASIC19.56■□□□□ 0.72
Col1a1P11087 Calcb-203ENSMUST00000182816 706 ntAPPRIS ALT2 TSL 5 BASIC19.56■□□□□ 0.72
Col1a1P11087 Gm7507-201ENSMUST00000183053 1008 ntBASIC19.56■□□□□ 0.72
Col1a1P11087 Gm29456-201ENSMUST00000189894 768 ntTSL 3 BASIC19.56■□□□□ 0.72
Col1a1P11087 Aspscr1-204ENSMUST00000106159 1615 ntTSL 5 BASIC19.56■□□□□ 0.72
Col1a1P11087 Nsg1-201ENSMUST00000031009 2581 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Col1a1P11087 Ttc39a-201ENSMUST00000064129 2356 ntAPPRIS P3 TSL 1 (best) BASIC19.56■□□□□ 0.72
Col1a1P11087 Cobll1-202ENSMUST00000102726 5031 ntAPPRIS P3 TSL 1 (best) BASIC19.56■□□□□ 0.72
Col1a1P11087 Cobll1-203ENSMUST00000112429 5045 ntAPPRIS ALT2 TSL 5 BASIC19.56■□□□□ 0.72
Col1a1P11087 Slc16a10-201ENSMUST00000092566 5397 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Col1a1P11087 Ctbp2-201ENSMUST00000033269 2321 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Col1a1P11087 Amigo2-201ENSMUST00000053106 2871 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Col1a1P11087 Ercc6l2-202ENSMUST00000021926 1592 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
Col1a1P11087 Krt16-201ENSMUST00000007280 1565 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Col1a1P11087 Pigw-201ENSMUST00000067058 2675 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Col1a1P11087 Mipol1-201ENSMUST00000123498 2117 ntAPPRIS ALT2 TSL 5 BASIC19.55■□□□□ 0.72
Col1a1P11087 Gm16838-201ENSMUST00000144594 816 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
Col1a1P11087 Nudt3-209ENSMUST00000176876 465 ntTSL 2 BASIC19.55■□□□□ 0.72
Col1a1P11087 Nptn-211ENSMUST00000177064 582 ntTSL 5 BASIC19.55■□□□□ 0.72
Col1a1P11087 4931406C07Rik-209ENSMUST00000217042 691 ntTSL 3 BASIC19.55■□□□□ 0.72
Col1a1P11087 Cfd-202ENSMUST00000217837 871 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
Col1a1P11087 Nudt3-202ENSMUST00000062397 558 ntTSL 3 BASIC19.55■□□□□ 0.72
Col1a1P11087 Mdk-202ENSMUST00000069423 773 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Col1a1P11087 Klhl25-202ENSMUST00000171155 3403 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Col1a1P11087 Gm42939-201ENSMUST00000197514 2205 ntBASIC19.55■□□□□ 0.72
Col1a1P11087 Otub1-202ENSMUST00000123594 1728 ntTSL 5 BASIC19.55■□□□□ 0.72
Col1a1P11087 Zfp219-204ENSMUST00000226522 2804 ntAPPRIS P2 BASIC19.55■□□□□ 0.72
Col1a1P11087 Fbxo24-202ENSMUST00000111002 2306 ntTSL 5 BASIC19.55■□□□□ 0.72
Col1a1P11087 Tfap2a-209ENSMUST00000225180 1828 ntBASIC19.55■□□□□ 0.72
Retrieved 100 of 76,532 protein–RNA pairs in 19.2 ms