Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 Matn4-202ENSMUST00000103104 2243 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Hoxd3P09027 Dhx32-203ENSMUST00000106139 2233 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Hoxd3P09027 Rpp25-201ENSMUST00000080514 1423 ntAPPRIS P1 BASIC13.04□□□□□ -0.32
Hoxd3P09027 Cobll1-205ENSMUST00000112431 5024 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
Hoxd3P09027 Pou2f2-202ENSMUST00000108413 1599 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Hoxd3P09027 Adsl-204ENSMUST00000164806 1595 ntTSL 5 BASIC13.03□□□□□ -0.32
Hoxd3P09027 Ocel1-202ENSMUST00000110051 2179 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Hoxd3P09027 Farsa-202ENSMUST00000109754 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Hoxd3P09027 Mir142hg-201ENSMUST00000123700 269 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Hoxd3P09027 Tmem35b-201ENSMUST00000094712 1120 ntAPPRIS P2 TSL 1 (best) BASIC13.03□□□□□ -0.32
Hoxd3P09027 Agfg2-202ENSMUST00000100544 2858 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
Hoxd3P09027 Rnf208-202ENSMUST00000114355 1333 ntAPPRIS P1 BASIC13.03□□□□□ -0.32
Hoxd3P09027 Cklf-208ENSMUST00000212433 1304 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
Hoxd3P09027 4933402J07Rik-201ENSMUST00000093342 1304 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Hoxd3P09027 Bmi1-201ENSMUST00000028071 3594 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Hoxd3P09027 Acbd4-201ENSMUST00000024492 2075 ntAPPRIS P1 TSL 5 BASIC13.03□□□□□ -0.32
Hoxd3P09027 Mipol1-201ENSMUST00000123498 2117 ntAPPRIS ALT2 TSL 5 BASIC13.03□□□□□ -0.32
Hoxd3P09027 Hmg20b-204ENSMUST00000122993 1502 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Hoxd3P09027 Vps4a-201ENSMUST00000034388 2178 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Hoxd3P09027 Lgr6-201ENSMUST00000044828 6675 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Hoxd3P09027 Rbl2-201ENSMUST00000034091 4925 ntAPPRIS P3 TSL 1 (best) BASIC13.02□□□□□ -0.32
Hoxd3P09027 Xxylt1-201ENSMUST00000055389 2987 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
Hoxd3P09027 A930012L18Rik-201ENSMUST00000181094 2364 ntTSL 1 (best) BASIC13.02□□□□□ -0.32
Hoxd3P09027 Donson-201ENSMUST00000023682 2360 ntAPPRIS P2 TSL 1 (best) BASIC13.02□□□□□ -0.32
Hoxd3P09027 Sfrp4-201ENSMUST00000002883 1764 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
Hoxd3P09027 Zfp710-201ENSMUST00000049680 4721 ntAPPRIS P4 TSL 1 (best) BASIC13.02□□□□□ -0.32
Hoxd3P09027 Gpaa1-210ENSMUST00000172281 1809 ntTSL 5 BASIC13.02□□□□□ -0.32
Hoxd3P09027 Eml1-203ENSMUST00000109860 4160 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
Hoxd3P09027 Rev1-201ENSMUST00000027251 4262 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
Hoxd3P09027 Npnt-202ENSMUST00000042744 4619 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.33
Hoxd3P09027 Fndc11-202ENSMUST00000108835 1154 ntAPPRIS P1 TSL 2 BASIC13.02□□□□□ -0.33
Hoxd3P09027 Hnrnph3-203ENSMUST00000119814 682 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Hoxd3P09027 Gfod2-203ENSMUST00000155038 951 ntTSL 2 BASIC13.02□□□□□ -0.33
Hoxd3P09027 Klf13-204ENSMUST00000185175 487 ntTSL 2 BASIC13.02□□□□□ -0.33
Hoxd3P09027 Hint1-201ENSMUST00000020504 636 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Hoxd3P09027 AC122351.1-201ENSMUST00000220467 126 ntBASIC13.02□□□□□ -0.33
Hoxd3P09027 C1qbp-201ENSMUST00000078528 1175 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Hoxd3P09027 Olfr1232-201ENSMUST00000099785 936 ntAPPRIS P1 BASIC13.02□□□□□ -0.33
Hoxd3P09027 Thsd7a-202ENSMUST00000119581 5678 ntAPPRIS P2 TSL 5 BASIC13.02□□□□□ -0.33
Hoxd3P09027 Klf14-201ENSMUST00000101589 3056 ntAPPRIS P1 BASIC13.02□□□□□ -0.33
Hoxd3P09027 Tmem94-202ENSMUST00000103033 5238 ntAPPRIS P2 TSL 2 BASIC13.02□□□□□ -0.33
Hoxd3P09027 Hoxc9-201ENSMUST00000001706 2374 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Hoxd3P09027 Sash1-201ENSMUST00000015449 7183 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Hoxd3P09027 Tm7sf2-201ENSMUST00000025713 1471 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Hoxd3P09027 Etv6-201ENSMUST00000081028 5545 ntAPPRIS P1 TSL 2 BASIC13.02□□□□□ -0.33
Hoxd3P09027 Kif7-202ENSMUST00000178048 4524 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.33
Hoxd3P09027 Il9r-204ENSMUST00000142396 1542 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.33
Hoxd3P09027 Ptch1-201ENSMUST00000021921 7725 ntAPPRIS P2 TSL 1 (best) BASIC13.02□□□□□ -0.33
Hoxd3P09027 Rasd1-201ENSMUST00000062405 1611 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Hoxd3P09027 Raver2-201ENSMUST00000038463 4045 ntAPPRIS P2 TSL 1 (best) BASIC13.02□□□□□ -0.33
Hoxd3P09027 Mink1-202ENSMUST00000072873 4610 ntAPPRIS ALT2 TSL 5 BASIC13.01□□□□□ -0.33
Hoxd3P09027 Nkiras2-201ENSMUST00000017981 2097 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Hoxd3P09027 Mrpl39-201ENSMUST00000116584 2294 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Hoxd3P09027 Acot1-201ENSMUST00000168120 2272 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Hoxd3P09027 Rcc1-201ENSMUST00000030726 2278 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Hoxd3P09027 Nsg1-201ENSMUST00000031009 2581 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Hoxd3P09027 Col4a3bp-201ENSMUST00000077672 2746 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Hoxd3P09027 Nadk2-202ENSMUST00000100789 3578 ntAPPRIS ALT2 TSL 5 BASIC13.01□□□□□ -0.33
Hoxd3P09027 Pagr1a-203ENSMUST00000206416 558 ntTSL 3 BASIC13.01□□□□□ -0.33
Hoxd3P09027 Gm38973-201ENSMUST00000206810 878 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Hoxd3P09027 Nit1-202ENSMUST00000111295 1335 ntAPPRIS P3 TSL 1 (best) BASIC13.01□□□□□ -0.33
Hoxd3P09027 Dnmt3aos-201ENSMUST00000144896 1385 ntTSL 2 BASIC13.01□□□□□ -0.33
Hoxd3P09027 Dcps-202ENSMUST00000119847 1445 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Hoxd3P09027 Fam131c-201ENSMUST00000006380 1433 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Hoxd3P09027 Gpd1l-201ENSMUST00000084853 1436 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Hoxd3P09027 Platr31-201ENSMUST00000180653 1466 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Hoxd3P09027 Psmd8-203ENSMUST00000186182 1512 ntAPPRIS P2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Hoxd3P09027 2010016I18Rik-204ENSMUST00000190356 1562 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Hoxd3P09027 Cacna2d2-203ENSMUST00000164988 5542 ntAPPRIS ALT2 TSL 5 BASIC13.01□□□□□ -0.33
Hoxd3P09027 Arhgef10-201ENSMUST00000084207 5528 ntAPPRIS P4 TSL 1 (best) BASIC13.01□□□□□ -0.33
Hoxd3P09027 Vrk2-201ENSMUST00000078362 1889 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Hoxd3P09027 Tead1-201ENSMUST00000059768 9964 ntAPPRIS P4 TSL 1 (best) BASIC13.01□□□□□ -0.33
Hoxd3P09027 Gm13032-201ENSMUST00000151848 2001 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Hoxd3P09027 Ing1-207ENSMUST00000211007 2241 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Hoxd3P09027 Arfip2-202ENSMUST00000084782 2254 ntAPPRIS P2 TSL 5 BASIC13.01□□□□□ -0.33
Hoxd3P09027 Nrl-201ENSMUST00000062232 2504 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Hoxd3P09027 Pitpnm1-201ENSMUST00000049658 4206 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Hoxd3P09027 Synpo-201ENSMUST00000097566 5060 ntAPPRIS P3 TSL 1 (best) BASIC13.01□□□□□ -0.33
Hoxd3P09027 Agap1-202ENSMUST00000074945 10069 ntTSL 5 BASIC13□□□□□ -0.33
Hoxd3P09027 Plppr3-207ENSMUST00000167250 3063 ntAPPRIS ALT2 TSL 2 BASIC13□□□□□ -0.33
Hoxd3P09027 Ctnnbip1-201ENSMUST00000030839 2674 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Hoxd3P09027 Trim68-201ENSMUST00000082175 2388 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Hoxd3P09027 Esrrb-201ENSMUST00000021680 2136 ntAPPRIS P1 TSL 5 BASIC13□□□□□ -0.33
Hoxd3P09027 Mfsd10-202ENSMUST00000114329 1906 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Hoxd3P09027 Lhx8-205ENSMUST00000205251 1729 ntAPPRIS P1 TSL 5 BASIC13□□□□□ -0.33
Hoxd3P09027 Ric3-202ENSMUST00000120876 1633 ntAPPRIS ALT1 TSL 1 (best) BASIC13□□□□□ -0.33
Hoxd3P09027 Dap-201ENSMUST00000044524 1555 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Hoxd3P09027 Dlg5-202ENSMUST00000073687 7784 ntTSL 1 (best) BASIC13□□□□□ -0.33
Hoxd3P09027 Atp2b2-201ENSMUST00000089003 7067 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
Hoxd3P09027 Hes6-201ENSMUST00000086851 1335 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Hoxd3P09027 Gm7284-201ENSMUST00000131667 944 ntBASIC13□□□□□ -0.33
Hoxd3P09027 Utp23-204ENSMUST00000161651 582 ntTSL 5 BASIC13□□□□□ -0.33
Hoxd3P09027 4930505N22Rik-201ENSMUST00000181820 945 ntTSL 1 (best) BASIC13□□□□□ -0.33
Hoxd3P09027 Gm37722-201ENSMUST00000193757 208 ntBASIC13□□□□□ -0.33
Hoxd3P09027 Flt3l-206ENSMUST00000210197 834 ntAPPRIS ALT2 TSL 5 BASIC13□□□□□ -0.33
Hoxd3P09027 Gm4316-202ENSMUST00000212490 1115 ntTSL 1 (best) BASIC13□□□□□ -0.33
Hoxd3P09027 Mrpl14-201ENSMUST00000024734 645 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Hoxd3P09027 Znhit1-202ENSMUST00000085941 740 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Hoxd3P09027 Itsn1-203ENSMUST00000095909 6103 ntTSL 1 (best) BASIC13□□□□□ -0.33
Hoxd3P09027 Lin9-203ENSMUST00000192561 3160 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Retrieved 100 of 76,532 protein–RNA pairs in 46.9 ms