Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 AC073218.2-202ENST00000605962 617 ntTSL 5 BASIC5.68□□□□□ -1.5
PTCHD3Q3KNS1 C1orf185-204ENST00000612209 899 ntAPPRIS ALT2 TSL 2 BASIC5.68□□□□□ -1.5
PTCHD3Q3KNS1 AC127024.6-201ENST00000621598 424 ntBASIC5.68□□□□□ -1.5
PTCHD3Q3KNS1 PCBP1-AS1-282ENST00000625783 826 ntTSL 5 BASIC5.68□□□□□ -1.5
PTCHD3Q3KNS1 SNORA17.5-201ENST00000630429 132 ntBASIC5.68□□□□□ -1.5
PTCHD3Q3KNS1 OR8G3P-202ENST00000641572 1255 ntBASIC5.68□□□□□ -1.5
PTCHD3Q3KNS1 AASDH-210ENST00000602986 3480 ntTSL 5 BASIC5.68□□□□□ -1.5
PTCHD3Q3KNS1 MFSD8-219ENST00000641228 2559 ntBASIC5.68□□□□□ -1.5
PTCHD3Q3KNS1 MKI67-201ENST00000368653 11417 ntAPPRIS ALT2 TSL 2 BASIC5.68□□□□□ -1.5
PTCHD3Q3KNS1 PPIAL4G-201ENST00000419275 3856 ntAPPRIS P1 BASIC5.68□□□□□ -1.5
PTCHD3Q3KNS1 MIR4500HG-201ENST00000436290 1675 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
PTCHD3Q3KNS1 AL132640.2-201ENST00000559968 1698 ntBASIC5.68□□□□□ -1.5
PTCHD3Q3KNS1 MELK-210ENST00000543751 2400 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
PTCHD3Q3KNS1 TCF7L2-219ENST00000542695 4136 ntTSL 5 BASIC5.68□□□□□ -1.5
PTCHD3Q3KNS1 CDC42SE2-201ENST00000360515 3591 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
PTCHD3Q3KNS1 AP002512.4-202ENST00000641599 4530 ntBASIC5.68□□□□□ -1.5
PTCHD3Q3KNS1 BTLA-201ENST00000334529 3213 ntAPPRIS P3 TSL 1 (best) BASIC5.68□□□□□ -1.5
PTCHD3Q3KNS1 DBT-201ENST00000370131 1521 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
PTCHD3Q3KNS1 PDE10A-203ENST00000539869 4401 ntAPPRIS ALT2 TSL 1 (best) BASIC5.68□□□□□ -1.5
PTCHD3Q3KNS1 AQP9-201ENST00000219919 3034 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
PTCHD3Q3KNS1 MCMDC2-204ENST00000422365 5096 ntAPPRIS P1 TSL 2 BASIC5.67□□□□□ -1.5
PTCHD3Q3KNS1 PSG4-201ENST00000244295 1629 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
PTCHD3Q3KNS1 AL513550.1-201ENST00000418945 1638 ntTSL 2 BASIC5.67□□□□□ -1.5
PTCHD3Q3KNS1 KIAA0586-203ENST00000423743 5339 ntAPPRIS ALT2 TSL 1 (best) BASIC5.67□□□□□ -1.5
PTCHD3Q3KNS1 ADAM21-201ENST00000603540 2658 ntAPPRIS P1 TSL 3 BASIC5.67□□□□□ -1.5
PTCHD3Q3KNS1 ABI2-204ENST00000295851 22209 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
PTCHD3Q3KNS1 NOL4-202ENST00000535384 1853 ntTSL 2 BASIC5.67□□□□□ -1.5
PTCHD3Q3KNS1 SENP8-202ENST00000542035 1672 ntAPPRIS P1 TSL 2 BASIC5.67□□□□□ -1.5
PTCHD3Q3KNS1 MSL3P1-202ENST00000440028 1468 ntBASIC5.67□□□□□ -1.5
PTCHD3Q3KNS1 SSX3-201ENST00000298396 1232 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
PTCHD3Q3KNS1 OR4S2-201ENST00000312422 936 ntAPPRIS P1 BASIC5.67□□□□□ -1.5
PTCHD3Q3KNS1 RNU1-150P-201ENST00000362491 162 ntBASIC5.67□□□□□ -1.5
PTCHD3Q3KNS1 OSTCP5-201ENST00000425293 453 ntBASIC5.67□□□□□ -1.5
PTCHD3Q3KNS1 LINC01673-201ENST00000426418 468 ntTSL 3 BASIC5.67□□□□□ -1.5
PTCHD3Q3KNS1 CRIP1P1-201ENST00000427567 185 ntBASIC5.67□□□□□ -1.5
PTCHD3Q3KNS1 C1orf140-201ENST00000434398 645 ntTSL 3 BASIC5.67□□□□□ -1.5
PTCHD3Q3KNS1 PA2G4P6-201ENST00000438325 1197 ntBASIC5.67□□□□□ -1.5
PTCHD3Q3KNS1 AL139161.2-201ENST00000438371 740 ntTSL 3 BASIC5.67□□□□□ -1.5
PTCHD3Q3KNS1 MTCYBP31-201ENST00000438855 1122 ntBASIC5.67□□□□□ -1.5
PTCHD3Q3KNS1 AC019117.1-202ENST00000439046 589 ntTSL 3 BASIC5.67□□□□□ -1.5
PTCHD3Q3KNS1 AC000041.1-201ENST00000439655 175 ntBASIC5.67□□□□□ -1.5
PTCHD3Q3KNS1 NANOGP9-201ENST00000439890 892 ntBASIC5.67□□□□□ -1.5
PTCHD3Q3KNS1 AC015983.1-201ENST00000441577 373 ntBASIC5.67□□□□□ -1.5
PTCHD3Q3KNS1 PCBP1-AS1-232ENST00000442040 1111 ntTSL 3 BASIC5.67□□□□□ -1.5
PTCHD3Q3KNS1 VN1R25P-201ENST00000443385 738 ntBASIC5.67□□□□□ -1.5
PTCHD3Q3KNS1 AL353804.1-201ENST00000444482 451 ntTSL 5 BASIC5.67□□□□□ -1.5
PTCHD3Q3KNS1 AL161636.2-201ENST00000445179 927 ntBASIC5.67□□□□□ -1.5
PTCHD3Q3KNS1 AC087501.1-201ENST00000445617 715 ntTSL 5 BASIC5.67□□□□□ -1.5
PTCHD3Q3KNS1 Z73417.1-201ENST00000447373 778 ntBASIC5.67□□□□□ -1.5
PTCHD3Q3KNS1 SORCS3-AS1-201ENST00000449805 1278 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
PTCHD3Q3KNS1 AL096803.2-201ENST00000450032 677 ntBASIC5.67□□□□□ -1.5
PTCHD3Q3KNS1 AL122020.1-201ENST00000472287 459 ntBASIC5.67□□□□□ -1.5
PTCHD3Q3KNS1 RN7SL174P-201ENST00000475578 289 ntBASIC5.67□□□□□ -1.5
PTCHD3Q3KNS1 RN7SL101P-201ENST00000496350 279 ntBASIC5.67□□□□□ -1.5
PTCHD3Q3KNS1 HPRT1P1-201ENST00000509498 657 ntBASIC5.67□□□□□ -1.5
PTCHD3Q3KNS1 LINC01033-204ENST00000523194 715 ntTSL 2 BASIC5.67□□□□□ -1.5
PTCHD3Q3KNS1 AC027544.3-201ENST00000535082 757 ntBASIC5.67□□□□□ -1.5
PTCHD3Q3KNS1 LINC02411-203ENST00000546180 959 ntTSL 4 BASIC5.67□□□□□ -1.5
PTCHD3Q3KNS1 MTND3P12-201ENST00000559068 328 ntBASIC5.67□□□□□ -1.5
PTCHD3Q3KNS1 AC137800.1-201ENST00000562976 573 ntTSL 4 BASIC5.67□□□□□ -1.5
PTCHD3Q3KNS1 AC090912.2-203ENST00000581177 477 ntTSL 3 BASIC5.67□□□□□ -1.5
PTCHD3Q3KNS1 MIR4433B-201ENST00000581329 102 ntBASIC5.67□□□□□ -1.5
PTCHD3Q3KNS1 GTSCR1-201ENST00000582578 470 ntTSL 3 BASIC5.67□□□□□ -1.5
PTCHD3Q3KNS1 AL354733.2-210ENST00000586211 647 ntTSL 5 BASIC5.67□□□□□ -1.5
PTCHD3Q3KNS1 MRO-208ENST00000588444 866 ntTSL 3 BASIC5.67□□□□□ -1.5
PTCHD3Q3KNS1 VN1R87P-201ENST00000596706 487 ntBASIC5.67□□□□□ -1.5
PTCHD3Q3KNS1 Z82195.1-201ENST00000604558 398 ntBASIC5.67□□□□□ -1.5
PTCHD3Q3KNS1 AL133481.2-203ENST00000607558 139 ntBASIC5.67□□□□□ -1.5
PTCHD3Q3KNS1 Metazoa_SRP.130-201ENST00000622625 267 ntBASIC5.67□□□□□ -1.5
PTCHD3Q3KNS1 AL137789.1-204ENST00000623503 666 ntTSL 5 BASIC5.67□□□□□ -1.5
PTCHD3Q3KNS1 ADAMTS9-AS1-210ENST00000625328 699 ntTSL 5 BASIC5.67□□□□□ -1.5
PTCHD3Q3KNS1 UGP2-232ENST00000640075 567 ntTSL 5 BASIC5.67□□□□□ -1.5
PTCHD3Q3KNS1 NBPF19-201ENST00000369227 3670 ntTSL 5 BASIC5.67□□□□□ -1.5
PTCHD3Q3KNS1 NBPF20-203ENST00000594479 3670 ntTSL 5 BASIC5.67□□□□□ -1.5
PTCHD3Q3KNS1 NBPF14-210ENST00000621066 3670 ntTSL 5 BASIC5.67□□□□□ -1.5
PTCHD3Q3KNS1 AC008505.1-203ENST00000637345 1766 ntTSL 5 BASIC5.67□□□□□ -1.5
PTCHD3Q3KNS1 AC098679.1-203ENST00000505532 2227 ntTSL 2 BASIC5.67□□□□□ -1.5
PTCHD3Q3KNS1 CASP1-215ENST00000533400 2001 ntAPPRIS P4 TSL 1 (best) BASIC5.67□□□□□ -1.5
PTCHD3Q3KNS1 MFSD8-239ENST00000641590 2479 ntBASIC5.67□□□□□ -1.5
PTCHD3Q3KNS1 MTO1-212ENST00000498286 10857 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
PTCHD3Q3KNS1 PSD3-204ENST00000440756 11690 ntAPPRIS ALT2 TSL 5 BASIC5.67□□□□□ -1.5
PTCHD3Q3KNS1 EEF1A1P14-201ENST00000421195 1376 ntBASIC5.67□□□□□ -1.5
PTCHD3Q3KNS1 CDC5L-201ENST00000371477 6423 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
PTCHD3Q3KNS1 PLEKHA1-203ENST00000368990 14010 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
PTCHD3Q3KNS1 POSTN-204ENST00000379749 3210 ntTSL 5 BASIC5.67□□□□□ -1.5
PTCHD3Q3KNS1 CPXCR1-201ENST00000276127 1630 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
PTCHD3Q3KNS1 VNN2-206ENST00000525270 1608 ntAPPRIS ALT2 TSL 2 BASIC5.66□□□□□ -1.5
PTCHD3Q3KNS1 ZNF107-205ENST00000613690 5589 ntAPPRIS ALT2 TSL 5 BASIC5.66□□□□□ -1.5
PTCHD3Q3KNS1 OFD1P8Y-201ENST00000449148 1433 ntBASIC5.66□□□□□ -1.5
PTCHD3Q3KNS1 MGC32805-205ENST00000510972 1424 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
PTCHD3Q3KNS1 ZFAND6-213ENST00000559835 1446 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
PTCHD3Q3KNS1 C17orf78-203ENST00000611038 1675 ntAPPRIS ALT2 TSL 2 BASIC5.66□□□□□ -1.5
PTCHD3Q3KNS1 AL121594.3-201ENST00000557565 3857 ntAPPRIS P1 TSL 2 BASIC5.66□□□□□ -1.5
PTCHD3Q3KNS1 RNF217-201ENST00000359704 1784 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
PTCHD3Q3KNS1 IFNG-201ENST00000229135 1218 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
PTCHD3Q3KNS1 OR56A3-201ENST00000329564 948 ntAPPRIS P1 BASIC5.66□□□□□ -1.5
PTCHD3Q3KNS1 OR14A16-201ENST00000357627 930 ntAPPRIS P1 BASIC5.66□□□□□ -1.5
PTCHD3Q3KNS1 RNU6-236P-201ENST00000363886 106 ntBASIC5.66□□□□□ -1.5
PTCHD3Q3KNS1 PPCS-201ENST00000372556 984 ntTSL 2 BASIC5.66□□□□□ -1.5
PTCHD3Q3KNS1 KRTAP29-1-201ENST00000391353 1026 ntAPPRIS P1 BASIC5.66□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 77.9 ms