Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 AC083923.2-202ENST00000517773 498 ntTSL 3 BASIC5.27□□□□□ -1.57
CCDC3Q9BQI4 OR7E10P-201ENST00000526420 991 ntBASIC5.27□□□□□ -1.57
CCDC3Q9BQI4 ASB8-202ENST00000535055 657 ntTSL 2 BASIC5.27□□□□□ -1.57
CCDC3Q9BQI4 AC034102.2-201ENST00000548861 489 ntAPPRIS P1 TSL 5 BASIC5.27□□□□□ -1.57
CCDC3Q9BQI4 AC039056.1-201ENST00000552704 467 ntTSL 3 BASIC5.27□□□□□ -1.57
CCDC3Q9BQI4 RPL10P14-201ENST00000565265 298 ntBASIC5.27□□□□□ -1.57
CCDC3Q9BQI4 AC098850.3-201ENST00000577569 771 ntTSL 3 BASIC5.27□□□□□ -1.57
CCDC3Q9BQI4 VDAC1P8-204ENST00000589489 997 ntTSL 5 BASIC5.27□□□□□ -1.57
CCDC3Q9BQI4 AC010320.2-203ENST00000601745 574 ntTSL 4 BASIC5.27□□□□□ -1.57
CCDC3Q9BQI4 AC138035.1-202ENST00000604669 683 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
CCDC3Q9BQI4 AC015802.5-201ENST00000607478 399 ntBASIC5.27□□□□□ -1.57
CCDC3Q9BQI4 MIR325HG-202ENST00000626832 598 ntTSL 4 BASIC5.27□□□□□ -1.57
CCDC3Q9BQI4 CYP4F35P-202ENST00000636121 390 ntBASIC5.27□□□□□ -1.57
CCDC3Q9BQI4 AP001153.1-201ENST00000641024 338 ntBASIC5.27□□□□□ -1.57
CCDC3Q9BQI4 PHTF2-207ENST00000424760 1977 ntTSL 2 BASIC5.27□□□□□ -1.57
CCDC3Q9BQI4 LRP1B-201ENST00000389484 16535 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
CCDC3Q9BQI4 CNOT6LP1-201ENST00000559681 1462 ntBASIC5.26□□□□□ -1.57
CCDC3Q9BQI4 ABCC13-202ENST00000463099 3842 ntBASIC5.26□□□□□ -1.57
CCDC3Q9BQI4 XKR4-201ENST00000327381 19880 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
CCDC3Q9BQI4 AADAT-202ENST00000353187 2101 ntAPPRIS P3 TSL 2 BASIC5.26□□□□□ -1.57
CCDC3Q9BQI4 BBIP1-207ENST00000448814 2119 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
CCDC3Q9BQI4 IKZF2-207ENST00000434687 3888 ntAPPRIS P2 TSL 5 BASIC5.26□□□□□ -1.57
CCDC3Q9BQI4 AC092681.1-201ENST00000297369 291 ntBASIC5.26□□□□□ -1.57
CCDC3Q9BQI4 SPRR2D-201ENST00000360379 682 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
CCDC3Q9BQI4 RNA5SP305-201ENST00000362665 119 ntBASIC5.26□□□□□ -1.57
CCDC3Q9BQI4 AL353625.1-202ENST00000366273 571 ntBASIC5.26□□□□□ -1.57
CCDC3Q9BQI4 SNORD56.6-201ENST00000384569 71 ntBASIC5.26□□□□□ -1.57
CCDC3Q9BQI4 MIR3681HG-202ENST00000412606 578 ntTSL 5 BASIC5.26□□□□□ -1.57
CCDC3Q9BQI4 RPSAP35-201ENST00000413753 818 ntBASIC5.26□□□□□ -1.57
CCDC3Q9BQI4 LINC01507-201ENST00000417801 446 ntTSL 5 BASIC5.26□□□□□ -1.57
CCDC3Q9BQI4 MORF4L2-205ENST00000423833 717 ntTSL 5 BASIC5.26□□□□□ -1.57
CCDC3Q9BQI4 AC093655.2-201ENST00000425735 631 ntBASIC5.26□□□□□ -1.57
CCDC3Q9BQI4 AL445528.1-201ENST00000426330 420 ntBASIC5.26□□□□□ -1.57
CCDC3Q9BQI4 TMEM244-202ENST00000438392 565 ntAPPRIS P1 TSL 5 BASIC5.26□□□□□ -1.57
CCDC3Q9BQI4 LINC00969-211ENST00000438608 525 ntTSL 5 BASIC5.26□□□□□ -1.57
CCDC3Q9BQI4 RPS23P9-201ENST00000448848 438 ntBASIC5.26□□□□□ -1.57
CCDC3Q9BQI4 EIF4EBP2P1-201ENST00000450009 343 ntBASIC5.26□□□□□ -1.57
CCDC3Q9BQI4 AL672138.1-201ENST00000450604 1015 ntBASIC5.26□□□□□ -1.57
CCDC3Q9BQI4 RPL7P61-201ENST00000451721 751 ntBASIC5.26□□□□□ -1.57
CCDC3Q9BQI4 AC073486.1-202ENST00000458437 489 ntTSL 3 BASIC5.26□□□□□ -1.57
CCDC3Q9BQI4 AC109462.1-201ENST00000491087 368 ntBASIC5.26□□□□□ -1.57
CCDC3Q9BQI4 AC015864.1-201ENST00000496512 544 ntBASIC5.26□□□□□ -1.57
CCDC3Q9BQI4 RPS17P5-201ENST00000498293 408 ntBASIC5.26□□□□□ -1.57
CCDC3Q9BQI4 AC025187.1-201ENST00000506305 686 ntTSL 3 BASIC5.26□□□□□ -1.57
CCDC3Q9BQI4 AC093763.1-201ENST00000512464 699 ntTSL 3 BASIC5.26□□□□□ -1.57
CCDC3Q9BQI4 AC013549.2-201ENST00000526953 489 ntTSL 3 BASIC5.26□□□□□ -1.57
CCDC3Q9BQI4 AC005000.1-201ENST00000536192 288 ntBASIC5.26□□□□□ -1.57
CCDC3Q9BQI4 GS1-279B7.1-203ENST00000565520 609 ntTSL 5 BASIC5.26□□□□□ -1.57
CCDC3Q9BQI4 AC010551.2-201ENST00000569200 416 ntTSL 3 BASIC5.26□□□□□ -1.57
CCDC3Q9BQI4 MIR4646-201ENST00000580775 63 ntBASIC5.26□□□□□ -1.57
CCDC3Q9BQI4 AC023932.1-201ENST00000582726 429 ntTSL 3 BASIC5.26□□□□□ -1.57
CCDC3Q9BQI4 AC104365.3-201ENST00000587011 625 ntTSL 5 BASIC5.26□□□□□ -1.57
CCDC3Q9BQI4 AC006116.3-201ENST00000592968 361 ntBASIC5.26□□□□□ -1.57
CCDC3Q9BQI4 AKAP6-212ENST00000557272 4601 ntTSL 5 BASIC5.26□□□□□ -1.57
CCDC3Q9BQI4 MYBPC1-221ENST00000551300 3934 ntAPPRIS ALT2 TSL 1 (best) BASIC5.26□□□□□ -1.57
CCDC3Q9BQI4 ALCAM-205ENST00000472644 4189 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
CCDC3Q9BQI4 TANK-205ENST00000405852 2155 ntTSL 5 BASIC5.26□□□□□ -1.57
CCDC3Q9BQI4 TGIF1-204ENST00000400167 1352 ntTSL 3 BASIC5.26□□□□□ -1.57
CCDC3Q9BQI4 FAM170B-AS1-203ENST00000442525 2000 ntTSL 2 BASIC5.26□□□□□ -1.57
CCDC3Q9BQI4 AL022322.2-201ENST00000624072 20397 ntBASIC5.26□□□□□ -1.57
CCDC3Q9BQI4 AC087565.3-202ENST00000642085 1603 ntBASIC5.26□□□□□ -1.57
CCDC3Q9BQI4 DTNA-227ENST00000597599 1869 ntAPPRIS ALT2 TSL 2 BASIC5.26□□□□□ -1.57
CCDC3Q9BQI4 CFAP57-204ENST00000528956 3037 ntTSL 2 BASIC5.26□□□□□ -1.57
CCDC3Q9BQI4 CUL4B-204ENST00000404115 3264 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
CCDC3Q9BQI4 C12orf50-201ENST00000298699 1722 ntAPPRIS P1 TSL 2 BASIC5.26□□□□□ -1.57
CCDC3Q9BQI4 AC092070.2-203ENST00000598377 3644 ntBASIC5.25□□□□□ -1.57
CCDC3Q9BQI4 OR8D4-201ENST00000321355 1331 ntAPPRIS P1 BASIC5.25□□□□□ -1.57
CCDC3Q9BQI4 PLCH1-AS1-201ENST00000475196 1308 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
CCDC3Q9BQI4 ERP27-201ENST00000266397 2096 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
CCDC3Q9BQI4 UGT2B17-201ENST00000317746 2077 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
CCDC3Q9BQI4 TYW3-203ENST00000457880 3335 ntTSL 2 BASIC5.25□□□□□ -1.57
CCDC3Q9BQI4 OR51C1P-202ENST00000641159 1444 ntBASIC5.25□□□□□ -1.57
CCDC3Q9BQI4 AC008695.1-201ENST00000514667 6393 ntAPPRIS P1 TSL 2 BASIC5.25□□□□□ -1.57
CCDC3Q9BQI4 UGT2A1-205ENST00000512704 2519 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
CCDC3Q9BQI4 TNRC6B-206ENST00000454349 18279 ntAPPRIS ALT2 TSL 2 BASIC5.25□□□□□ -1.57
CCDC3Q9BQI4 OTOGL-204ENST00000547103 8032 ntAPPRIS ALT2 TSL 5 BASIC5.25□□□□□ -1.57
CCDC3Q9BQI4 RCAN2-201ENST00000306764 3240 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
CCDC3Q9BQI4 AC103591.2-201ENST00000265259 766 ntBASIC5.25□□□□□ -1.57
CCDC3Q9BQI4 U3.10-201ENST00000364459 214 ntBASIC5.25□□□□□ -1.57
CCDC3Q9BQI4 U3.36-201ENST00000408418 213 ntBASIC5.25□□□□□ -1.57
CCDC3Q9BQI4 RNA5SP487-201ENST00000410186 122 ntBASIC5.25□□□□□ -1.57
CCDC3Q9BQI4 AC096711.3-201ENST00000420721 582 ntTSL 4 BASIC5.25□□□□□ -1.57
CCDC3Q9BQI4 HNRNPA3P4-201ENST00000427514 803 ntBASIC5.25□□□□□ -1.57
CCDC3Q9BQI4 AL590623.1-201ENST00000427864 105 ntBASIC5.25□□□□□ -1.57
CCDC3Q9BQI4 TXNDC12-AS1-201ENST00000428794 391 ntTSL 3 BASIC5.25□□□□□ -1.57
CCDC3Q9BQI4 TPTE2P1-203ENST00000434100 514 ntTSL 3 BASIC5.25□□□□□ -1.57
CCDC3Q9BQI4 VN1R54P-201ENST00000435210 1049 ntBASIC5.25□□□□□ -1.57
CCDC3Q9BQI4 AC018467.1-203ENST00000440785 506 ntTSL 3 BASIC5.25□□□□□ -1.57
CCDC3Q9BQI4 AL035416.1-201ENST00000443012 767 ntTSL 2 BASIC5.25□□□□□ -1.57
CCDC3Q9BQI4 AC073850.1-201ENST00000449243 255 ntBASIC5.25□□□□□ -1.57
CCDC3Q9BQI4 RPL35AP28-201ENST00000459730 331 ntBASIC5.25□□□□□ -1.57
CCDC3Q9BQI4 AC093607.1-202ENST00000499715 559 ntTSL 4 BASIC5.25□□□□□ -1.57
CCDC3Q9BQI4 SUMO2P4-201ENST00000504193 276 ntBASIC5.25□□□□□ -1.57
CCDC3Q9BQI4 AC025470.2-201ENST00000506106 897 ntTSL 2 BASIC5.25□□□□□ -1.57
CCDC3Q9BQI4 AC027627.1-201ENST00000506895 753 ntTSL 3 BASIC5.25□□□□□ -1.57
CCDC3Q9BQI4 AC010395.1-201ENST00000507627 697 ntTSL 5 BASIC5.25□□□□□ -1.57
CCDC3Q9BQI4 NDUFB5P1-201ENST00000508134 564 ntBASIC5.25□□□□□ -1.57
CCDC3Q9BQI4 AC013644.1-202ENST00000523166 499 ntTSL 2 BASIC5.25□□□□□ -1.57
CCDC3Q9BQI4 AC090692.1-202ENST00000525363 607 ntTSL 4 BASIC5.25□□□□□ -1.57
CCDC3Q9BQI4 OR8Q1P-201ENST00000526467 655 ntBASIC5.25□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 80.1 ms