Protein–RNA interactions for Protein: Q9ER60

Scn4a, Sodium channel protein type 4 subunit alpha, mousemouse

Predictions only

Length 1,841 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn4aQ9ER60 G430095P16Rik-201ENSMUST00000098571 721 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
Scn4aQ9ER60 Gm9889-202ENSMUST00000206983 1577 ntBASIC23.05■■□□□ 1.28
Scn4aQ9ER60 Gm38575-203ENSMUST00000215824 1490 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
Scn4aQ9ER60 Cct4-201ENSMUST00000020562 1634 ntTSL 5 BASIC23.04■■□□□ 1.28
Scn4aQ9ER60 Htr5b-201ENSMUST00000055884 1935 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
Scn4aQ9ER60 Hjurp-202ENSMUST00000065420 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC23.04■■□□□ 1.28
Scn4aQ9ER60 Zdhhc25-201ENSMUST00000066949 1368 ntAPPRIS P1 BASIC23.04■■□□□ 1.28
Scn4aQ9ER60 Otub1-202ENSMUST00000123594 1728 ntTSL 5 BASIC23.04■■□□□ 1.28
Scn4aQ9ER60 Gm25406-201ENSMUST00000157599 105 ntBASIC23.04■■□□□ 1.28
Scn4aQ9ER60 Caly-202ENSMUST00000166758 1220 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
Scn4aQ9ER60 Gm45612-201ENSMUST00000211320 160 ntBASIC23.04■■□□□ 1.28
Scn4aQ9ER60 Ifi27-204ENSMUST00000079294 963 ntAPPRIS ALT2 TSL 1 (best) BASIC23.04■■□□□ 1.28
Scn4aQ9ER60 Rhoa-201ENSMUST00000007959 2197 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
Scn4aQ9ER60 Tmem107-202ENSMUST00000094081 1263 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
Scn4aQ9ER60 Kiz-201ENSMUST00000099278 2183 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
Scn4aQ9ER60 Phyhd1-204ENSMUST00000113645 1325 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
Scn4aQ9ER60 Mettl27-202ENSMUST00000068617 1685 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
Scn4aQ9ER60 Smad4-201ENSMUST00000025393 3384 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
Scn4aQ9ER60 Bin2-204ENSMUST00000182775 1908 ntTSL 5 BASIC23.03■■□□□ 1.28
Scn4aQ9ER60 Aimp2-202ENSMUST00000100483 1073 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
Scn4aQ9ER60 Aimp2-201ENSMUST00000031613 1185 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
Scn4aQ9ER60 Cldn13-201ENSMUST00000008987 1067 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
Scn4aQ9ER60 Hoxc13-201ENSMUST00000001700 2461 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
Scn4aQ9ER60 Fam217a-204ENSMUST00000225242 1811 ntAPPRIS ALT2 BASIC23.03■■□□□ 1.28
Scn4aQ9ER60 Mtch2-205ENSMUST00000136872 2596 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
Scn4aQ9ER60 Gm3252-201ENSMUST00000165619 1949 ntAPPRIS P1 TSL 5 BASIC23.03■■□□□ 1.28
Scn4aQ9ER60 Eif2b4-201ENSMUST00000077693 2025 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
Scn4aQ9ER60 Rasgef1b-205ENSMUST00000161148 2430 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
Scn4aQ9ER60 Id1-202ENSMUST00000109824 1160 ntAPPRIS ALT2 BASIC23.03■■□□□ 1.28
Scn4aQ9ER60 Gm17399-201ENSMUST00000181824 1181 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
Scn4aQ9ER60 Tex12-201ENSMUST00000034568 895 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
Scn4aQ9ER60 Efcab8-203ENSMUST00000175856 1703 ntAPPRIS ALT2 TSL 2 BASIC23.03■■□□□ 1.28
Scn4aQ9ER60 Exoc5-206ENSMUST00000161504 2582 ntTSL 5 BASIC23.02■■□□□ 1.28
Scn4aQ9ER60 Cstf2-202ENSMUST00000113286 2717 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
Scn4aQ9ER60 Yipf2-202ENSMUST00000078572 1894 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
Scn4aQ9ER60 Platr13-201ENSMUST00000133945 375 ntTSL 5 BASIC23.02■■□□□ 1.28
Scn4aQ9ER60 Haglr-202ENSMUST00000152462 443 ntTSL 2 BASIC23.02■■□□□ 1.28
Scn4aQ9ER60 Washc3-202ENSMUST00000171151 837 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
Scn4aQ9ER60 Gm20680-201ENSMUST00000176881 789 ntTSL 5 BASIC23.02■■□□□ 1.28
Scn4aQ9ER60 Cd3g-201ENSMUST00000002101 1023 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
Scn4aQ9ER60 Gm5519-201ENSMUST00000042061 513 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
Scn4aQ9ER60 6030498E09Rik-201ENSMUST00000050744 1291 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
Scn4aQ9ER60 Gatc-201ENSMUST00000139167 1797 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
Scn4aQ9ER60 Mon1a-201ENSMUST00000035202 2042 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
Scn4aQ9ER60 Tmem37-201ENSMUST00000056089 1311 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
Scn4aQ9ER60 Myef2-209ENSMUST00000152367 2071 ntAPPRIS P4 TSL 1 (best) BASIC23.02■■□□□ 1.28
Scn4aQ9ER60 Cyb561d2-201ENSMUST00000041459 1786 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
Scn4aQ9ER60 Meig1-203ENSMUST00000115082 603 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
Scn4aQ9ER60 Gm43474-201ENSMUST00000196415 774 ntBASIC23.01■■□□□ 1.27
Scn4aQ9ER60 Ybx1-ps2-201ENSMUST00000201305 957 ntBASIC23.01■■□□□ 1.27
Scn4aQ9ER60 Gm9172-201ENSMUST00000212092 954 ntBASIC23.01■■□□□ 1.27
Scn4aQ9ER60 AC125206.2-201ENSMUST00000217454 574 ntBASIC23.01■■□□□ 1.27
Scn4aQ9ER60 Gm8655-201ENSMUST00000221159 852 ntBASIC23.01■■□□□ 1.27
Scn4aQ9ER60 Hnrnpa1l2-ps2-201ENSMUST00000022493 963 ntBASIC23.01■■□□□ 1.27
Scn4aQ9ER60 Hsf1-204ENSMUST00000226872 2104 ntBASIC23.01■■□□□ 1.27
Scn4aQ9ER60 Dnaja4-201ENSMUST00000070070 3003 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
Scn4aQ9ER60 Chaf1b-201ENSMUST00000023666 1922 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
Scn4aQ9ER60 Abi2-206ENSMUST00000188594 1658 ntTSL 5 BASIC23.01■■□□□ 1.27
Scn4aQ9ER60 Fars2-205ENSMUST00000224241 1665 ntAPPRIS P1 BASIC23.01■■□□□ 1.27
Scn4aQ9ER60 Fndc4-202ENSMUST00000172435 2333 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
Scn4aQ9ER60 Lfng-201ENSMUST00000031555 2305 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
Scn4aQ9ER60 Mir6990-201ENSMUST00000183724 91 ntBASIC23.01■■□□□ 1.27
Scn4aQ9ER60 Gm28237-202ENSMUST00000189477 748 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
Scn4aQ9ER60 Abhd18-207ENSMUST00000203892 1021 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
Scn4aQ9ER60 Casp16-ps-201ENSMUST00000088673 531 ntAPPRIS P1 TSL 5 BASIC23.01■■□□□ 1.27
Scn4aQ9ER60 Sumo1-201ENSMUST00000091374 1215 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
Scn4aQ9ER60 Esrrb-206ENSMUST00000167891 1344 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
Scn4aQ9ER60 Fdxr-201ENSMUST00000021078 1948 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
Scn4aQ9ER60 Ythdc1-202ENSMUST00000119339 3222 ntAPPRIS ALT2 TSL 5 BASIC23■■□□□ 1.27
Scn4aQ9ER60 Rpl37rt-201ENSMUST00000100847 682 ntTSL 3 BASIC23■■□□□ 1.27
Scn4aQ9ER60 Hist1h3e-201ENSMUST00000105107 836 ntAPPRIS P1 BASIC23■■□□□ 1.27
Scn4aQ9ER60 Gm20412-201ENSMUST00000173249 633 ntTSL 5 BASIC23■■□□□ 1.27
Scn4aQ9ER60 Avpi1-201ENSMUST00000018965 1044 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
Scn4aQ9ER60 0610005C13Rik-209ENSMUST00000211209 974 ntTSL 2 BASIC23■■□□□ 1.27
Scn4aQ9ER60 Krt77-201ENSMUST00000087996 2930 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
Scn4aQ9ER60 1700008J07Rik-201ENSMUST00000185351 2432 ntBASIC23■■□□□ 1.27
Scn4aQ9ER60 Fhad1-201ENSMUST00000036701 1366 ntTSL 1 (best) BASIC23■■□□□ 1.27
Scn4aQ9ER60 Lrrc43-203ENSMUST00000196809 2031 ntAPPRIS ALT2 TSL 1 (best) BASIC23■■□□□ 1.27
Scn4aQ9ER60 Foxp1-220ENSMUST00000176565 3727 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
Scn4aQ9ER60 Gm13823-201ENSMUST00000119930 345 ntBASIC22.99■■□□□ 1.27
Scn4aQ9ER60 Fgf17-202ENSMUST00000227123 1336 ntBASIC22.99■■□□□ 1.27
Scn4aQ9ER60 Lpar5-203ENSMUST00000171989 1458 ntAPPRIS P1 TSL 2 BASIC22.99■■□□□ 1.27
Scn4aQ9ER60 Atat1-202ENSMUST00000061052 1452 ntAPPRIS ALT2 TSL 1 (best) BASIC22.99■■□□□ 1.27
Scn4aQ9ER60 Acbd4-201ENSMUST00000024492 2075 ntAPPRIS P1 TSL 5 BASIC22.99■■□□□ 1.27
Scn4aQ9ER60 Fam126b-201ENSMUST00000038372 2385 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
Scn4aQ9ER60 Sept7-202ENSMUST00000165594 2516 ntAPPRIS P2 TSL 5 BASIC22.99■■□□□ 1.27
Scn4aQ9ER60 Zfp213-201ENSMUST00000095606 2672 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
Scn4aQ9ER60 Fzr1-205ENSMUST00000140901 3057 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
Scn4aQ9ER60 Gm15427-201ENSMUST00000117288 531 ntBASIC22.98■■□□□ 1.27
Scn4aQ9ER60 Gm13365-201ENSMUST00000121188 973 ntBASIC22.98■■□□□ 1.27
Scn4aQ9ER60 Rpl18-ps1-201ENSMUST00000121555 525 ntBASIC22.98■■□□□ 1.27
Scn4aQ9ER60 Tmem9-205ENSMUST00000165125 901 ntAPPRIS P1 TSL 3 BASIC22.98■■□□□ 1.27
Scn4aQ9ER60 Gm11937-201ENSMUST00000076478 396 ntAPPRIS P1 BASIC22.98■■□□□ 1.27
Scn4aQ9ER60 2810039B14Rik-201ENSMUST00000183928 1459 ntTSL 1 (best) BASIC22.98■■□□□ 1.27
Scn4aQ9ER60 H2-Q10-201ENSMUST00000068291 1473 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
Scn4aQ9ER60 Pex11b-207ENSMUST00000165842 1562 ntTSL 2 BASIC22.98■■□□□ 1.27
Scn4aQ9ER60 Pdlim5-212ENSMUST00000200043 1581 ntAPPRIS ALT2 TSL 1 (best) BASIC22.98■■□□□ 1.27
Scn4aQ9ER60 Gpr84-201ENSMUST00000079824 1550 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
Scn4aQ9ER60 Pced1a-202ENSMUST00000110277 1689 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
Scn4aQ9ER60 Tmem44-204ENSMUST00000140402 2405 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
Retrieved 100 of 76,532 protein–RNA pairs in 36.9 ms