Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Gm26697-201ENSMUST00000180898 1760 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Ddx56Q9D0R4 Antxr2-202ENSMUST00000199088 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Ddx56Q9D0R4 Nmnat3-201ENSMUST00000112935 2166 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Ddx56Q9D0R4 Rpl18-ps2-201ENSMUST00000118863 567 ntBASIC17.66■□□□□ 0.42
Ddx56Q9D0R4 Gm11539-201ENSMUST00000119837 557 ntBASIC17.66■□□□□ 0.42
Ddx56Q9D0R4 Gm13436-201ENSMUST00000120418 567 ntBASIC17.66■□□□□ 0.42
Ddx56Q9D0R4 Spdya-202ENSMUST00000124001 1247 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Ddx56Q9D0R4 Gssos2-201ENSMUST00000130859 727 ntTSL 3 BASIC17.66■□□□□ 0.42
Ddx56Q9D0R4 Lgals7-201ENSMUST00000081457 754 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Ddx56Q9D0R4 Gzme-201ENSMUST00000089549 916 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Ddx56Q9D0R4 Fam131b-201ENSMUST00000031891 4065 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Ddx56Q9D0R4 Gpaa1-201ENSMUST00000023221 2107 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Ddx56Q9D0R4 Ccnl1-201ENSMUST00000029416 2169 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Ddx56Q9D0R4 Mdm1-204ENSMUST00000169817 2022 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Ddx56Q9D0R4 Gm45774-201ENSMUST00000211992 2665 ntBASIC17.65■□□□□ 0.42
Ddx56Q9D0R4 Plppr4-201ENSMUST00000061071 5696 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Ddx56Q9D0R4 Sh3gl2-203ENSMUST00000107188 2286 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Ddx56Q9D0R4 Cep135-202ENSMUST00000121979 5537 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
Ddx56Q9D0R4 Hsf4-202ENSMUST00000163734 1630 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Ddx56Q9D0R4 Gm26580-201ENSMUST00000181002 2095 ntTSL 5 BASIC17.65■□□□□ 0.42
Ddx56Q9D0R4 Irak1-205ENSMUST00000114353 1896 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
Ddx56Q9D0R4 Lrrc36-206ENSMUST00000216765 2301 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
Ddx56Q9D0R4 Abhd11-206ENSMUST00000154469 1473 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Ddx56Q9D0R4 Sco1-201ENSMUST00000092996 2412 ntAPPRIS P2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Ddx56Q9D0R4 Syt8-202ENSMUST00000105976 1289 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Ddx56Q9D0R4 Syt8-205ENSMUST00000122393 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Ddx56Q9D0R4 Pabpc1l2b-ps-201ENSMUST00000124538 690 ntBASIC17.65■□□□□ 0.42
Ddx56Q9D0R4 Gtf3a-204ENSMUST00000146511 1298 ntAPPRIS P5 TSL 1 (best) BASIC17.65■□□□□ 0.42
Ddx56Q9D0R4 Cenps-207ENSMUST00000177408 689 ntTSL 2 BASIC17.65■□□□□ 0.42
Ddx56Q9D0R4 Gm2274-201ENSMUST00000184539 609 ntBASIC17.65■□□□□ 0.42
Ddx56Q9D0R4 Gm45618-201ENSMUST00000209890 660 ntAPPRIS P1 BASIC17.65■□□□□ 0.42
Ddx56Q9D0R4 Fgf8-202ENSMUST00000026241 1168 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Ddx56Q9D0R4 Slc46a1-201ENSMUST00000001126 1978 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Ddx56Q9D0R4 Plxnd1-201ENSMUST00000015511 6907 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Ddx56Q9D0R4 Zfp668-203ENSMUST00000106262 3169 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Ddx56Q9D0R4 Agpat3-203ENSMUST00000105388 3681 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
Ddx56Q9D0R4 Mink1-202ENSMUST00000072873 4610 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
Ddx56Q9D0R4 Mid1ip1-201ENSMUST00000008179 2019 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Ddx56Q9D0R4 A530084C06Rik-201ENSMUST00000170573 3200 ntAPPRIS P1 BASIC17.65■□□□□ 0.42
Ddx56Q9D0R4 Spock1-201ENSMUST00000172326 1320 ntAPPRIS P3 TSL 5 BASIC17.65■□□□□ 0.42
Ddx56Q9D0R4 Zfp865-203ENSMUST00000085427 2751 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Ddx56Q9D0R4 Homez-202ENSMUST00000142283 4713 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Ddx56Q9D0R4 Ptp4a2-201ENSMUST00000030578 3646 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
Ddx56Q9D0R4 Sart3-201ENSMUST00000019118 4447 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Ddx56Q9D0R4 Cpox-201ENSMUST00000060077 3186 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Ddx56Q9D0R4 Dhx32-201ENSMUST00000033290 2955 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
Ddx56Q9D0R4 Ggnbp2-201ENSMUST00000018547 2478 ntTSL 5 BASIC17.64■□□□□ 0.42
Ddx56Q9D0R4 Celf3-208ENSMUST00000198316 2505 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Ddx56Q9D0R4 Dscr3-201ENSMUST00000023615 2547 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Ddx56Q9D0R4 1700066B19Rik-201ENSMUST00000097617 2504 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Ddx56Q9D0R4 Ptges3l-202ENSMUST00000103102 1463 ntAPPRIS P2 TSL 1 (best) BASIC17.64■□□□□ 0.41
Ddx56Q9D0R4 Zbtb24-201ENSMUST00000080771 2844 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Ddx56Q9D0R4 Hmga1-206ENSMUST00000119486 1003 ntAPPRIS P3 TSL 2 BASIC17.64■□□□□ 0.41
Ddx56Q9D0R4 Dnajc2-201ENSMUST00000030771 2133 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Ddx56Q9D0R4 Mvb12a-201ENSMUST00000034272 1062 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Ddx56Q9D0R4 Thrsp-201ENSMUST00000043077 1277 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Ddx56Q9D0R4 Snx11-202ENSMUST00000107661 2197 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Ddx56Q9D0R4 Large2-215ENSMUST00000176810 2477 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.41
Ddx56Q9D0R4 Fcho1-209ENSMUST00000146100 3188 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Ddx56Q9D0R4 Zbtb25-201ENSMUST00000167011 1681 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.41
Ddx56Q9D0R4 Snip1-201ENSMUST00000052183 2345 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Ddx56Q9D0R4 Pid1-201ENSMUST00000168574 2664 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Ddx56Q9D0R4 Adgrb2-204ENSMUST00000106015 4982 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
Ddx56Q9D0R4 Wnt10b-204ENSMUST00000226655 1807 ntBASIC17.63■□□□□ 0.41
Ddx56Q9D0R4 Pex11a-201ENSMUST00000032761 2241 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Ddx56Q9D0R4 Rnls-201ENSMUST00000096114 1597 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Ddx56Q9D0R4 Abcd4-201ENSMUST00000021666 2309 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Ddx56Q9D0R4 Gm20403-201ENSMUST00000173803 372 ntAPPRIS P1 BASIC17.63■□□□□ 0.41
Ddx56Q9D0R4 H2afz-207ENSMUST00000174561 810 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Ddx56Q9D0R4 Gm7370-201ENSMUST00000219471 767 ntBASIC17.63■□□□□ 0.41
Ddx56Q9D0R4 Rps28-201ENSMUST00000087342 392 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Ddx56Q9D0R4 Rab6a-201ENSMUST00000032946 3214 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
Ddx56Q9D0R4 Tasp1-201ENSMUST00000046656 2480 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Ddx56Q9D0R4 Evc-202ENSMUST00000114148 2119 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
Ddx56Q9D0R4 Tm9sf1-205ENSMUST00000122358 2517 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Ddx56Q9D0R4 Gm26526-201ENSMUST00000181075 2927 ntTSL 5 BASIC17.63■□□□□ 0.41
Ddx56Q9D0R4 Gm12359-201ENSMUST00000139017 1399 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Ddx56Q9D0R4 Sec14l1-203ENSMUST00000103026 2589 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
Ddx56Q9D0R4 Gm36858-201ENSMUST00000194501 2391 ntBASIC17.62■□□□□ 0.41
Ddx56Q9D0R4 Ikzf1-203ENSMUST00000065433 4697 ntAPPRIS ALT2 TSL 5 BASIC17.62■□□□□ 0.41
Ddx56Q9D0R4 Tmem57-201ENSMUST00000030628 3826 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Ddx56Q9D0R4 Hmgb3-202ENSMUST00000072699 1571 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Ddx56Q9D0R4 Erich2-201ENSMUST00000100041 1749 ntAPPRIS P2 TSL 1 (best) BASIC17.62■□□□□ 0.41
Ddx56Q9D0R4 Ptgis-202ENSMUST00000088041 1711 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Ddx56Q9D0R4 Gm13559-201ENSMUST00000120476 863 ntBASIC17.62■□□□□ 0.41
Ddx56Q9D0R4 Gm10252-201ENSMUST00000209541 832 ntBASIC17.62■□□□□ 0.41
Ddx56Q9D0R4 Rundc3a-202ENSMUST00000107102 1837 ntAPPRIS ALT2 TSL 5 BASIC17.62■□□□□ 0.41
Ddx56Q9D0R4 Adamtsl1-201ENSMUST00000048885 1842 ntTSL 5 BASIC17.62■□□□□ 0.41
Ddx56Q9D0R4 Rbck1-202ENSMUST00000109847 2384 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Ddx56Q9D0R4 Hmg20b-213ENSMUST00000167481 1321 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
Ddx56Q9D0R4 Yipf2-202ENSMUST00000078572 1894 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Ddx56Q9D0R4 Napa-201ENSMUST00000006181 2517 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Ddx56Q9D0R4 Cnpy1-202ENSMUST00000118882 1984 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Ddx56Q9D0R4 Dag1-201ENSMUST00000080435 4364 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Ddx56Q9D0R4 Nfib-205ENSMUST00000107247 3267 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
Ddx56Q9D0R4 3110002H16Rik-201ENSMUST00000025276 2170 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Ddx56Q9D0R4 Rab35-201ENSMUST00000031492 2820 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Ddx56Q9D0R4 Rilpl1-201ENSMUST00000062153 2249 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Ddx56Q9D0R4 Rab11fip5-202ENSMUST00000204087 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
Ddx56Q9D0R4 Gopc-202ENSMUST00000105475 4317 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
Retrieved 100 of 76,532 protein–RNA pairs in 24.9 ms