Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Wdr41-203ENSMUST00000160115 2851 ntTSL 5 BASIC18.79■□□□□ 0.6
Smc1aQ9CU62 Rtcb-201ENSMUST00000001834 2009 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Smc1aQ9CU62 Ppp1r1b-201ENSMUST00000078694 2001 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Smc1aQ9CU62 Clcn2-202ENSMUST00000120099 2812 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
Smc1aQ9CU62 Txndc5-201ENSMUST00000035988 2843 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
Smc1aQ9CU62 Dnajc19-201ENSMUST00000011029 2499 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Smc1aQ9CU62 Cdkl3-203ENSMUST00000109076 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Smc1aQ9CU62 Katnbl1-201ENSMUST00000028552 2886 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Smc1aQ9CU62 1810062O18Rik-202ENSMUST00000128848 745 ntTSL 3 BASIC18.79■□□□□ 0.6
Smc1aQ9CU62 Tppp3-201ENSMUST00000014990 1127 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Smc1aQ9CU62 Aldh1a3-204ENSMUST00000174215 1066 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Smc1aQ9CU62 Mir2861-201ENSMUST00000175539 82 ntBASIC18.79■□□□□ 0.6
Smc1aQ9CU62 Lysmd2-201ENSMUST00000034702 1189 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Smc1aQ9CU62 Eif1b-201ENSMUST00000007139 1035 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Smc1aQ9CU62 Fez2-202ENSMUST00000112487 2020 ntAPPRIS ALT1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Smc1aQ9CU62 Tmx1-201ENSMUST00000021471 2795 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Smc1aQ9CU62 Tm7sf3-201ENSMUST00000037709 3241 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Smc1aQ9CU62 Slc29a1-201ENSMUST00000051574 1996 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
Smc1aQ9CU62 Bcat2-201ENSMUST00000033098 1772 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Smc1aQ9CU62 Arhgap42-203ENSMUST00000183182 1458 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Smc1aQ9CU62 Acbd6-201ENSMUST00000035560 5592 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Smc1aQ9CU62 Lmtk2-201ENSMUST00000041804 8114 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Smc1aQ9CU62 Pdx1-201ENSMUST00000085591 2158 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Smc1aQ9CU62 Kctd1-202ENSMUST00000168989 3456 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Smc1aQ9CU62 Zdhhc24-201ENSMUST00000006632 2558 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Smc1aQ9CU62 D3Ertd751e-205ENSMUST00000120167 773 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
Smc1aQ9CU62 Pantr1-210ENSMUST00000185599 343 ntTSL 3 BASIC18.78■□□□□ 0.6
Smc1aQ9CU62 Cdk2ap2-201ENSMUST00000025779 1080 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Smc1aQ9CU62 Fam167b-201ENSMUST00000052835 913 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Smc1aQ9CU62 Hist1h2aj-201ENSMUST00000091710 352 ntBASIC18.78■□□□□ 0.6
Smc1aQ9CU62 Shq1-204ENSMUST00000170667 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Smc1aQ9CU62 Sh2b1-202ENSMUST00000205340 3366 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
Smc1aQ9CU62 Lrrc14-202ENSMUST00000127208 4849 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Smc1aQ9CU62 Atxn7l2-202ENSMUST00000117409 2321 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
Smc1aQ9CU62 D17Wsu92e-203ENSMUST00000114863 3828 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
Smc1aQ9CU62 Mepce-201ENSMUST00000031740 3128 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Smc1aQ9CU62 Stam-202ENSMUST00000102960 5000 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
Smc1aQ9CU62 Nsmf-203ENSMUST00000100334 2957 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Smc1aQ9CU62 Ldb1-205ENSMUST00000137771 2014 ntTSL 5 BASIC18.78■□□□□ 0.6
Smc1aQ9CU62 Nrg3-201ENSMUST00000166968 4011 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
Smc1aQ9CU62 Unc13b-203ENSMUST00000107953 5034 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.6
Smc1aQ9CU62 Lmo4-203ENSMUST00000121796 1417 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Smc1aQ9CU62 Gm12085-201ENSMUST00000119263 940 ntBASIC18.77■□□□□ 0.6
Smc1aQ9CU62 Gm15138-201ENSMUST00000151778 379 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Smc1aQ9CU62 Gm20544-201ENSMUST00000174338 690 ntTSL 3 BASIC18.77■□□□□ 0.6
Smc1aQ9CU62 Gm26829-201ENSMUST00000180581 934 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Smc1aQ9CU62 Gm10459-201ENSMUST00000202708 1155 ntBASIC18.77■□□□□ 0.6
Smc1aQ9CU62 Cnksr2-201ENSMUST00000026750 5738 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Smc1aQ9CU62 Espn-209ENSMUST00000105655 1350 ntTSL 5 BASIC18.77■□□□□ 0.6
Smc1aQ9CU62 2410002F23Rik-217ENSMUST00000188111 2131 ntAPPRIS P2 TSL 2 BASIC18.77■□□□□ 0.6
Smc1aQ9CU62 Tdh-201ENSMUST00000022522 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Smc1aQ9CU62 Mrpl57-201ENSMUST00000022538 2877 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Smc1aQ9CU62 Aqp1-201ENSMUST00000004774 2627 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Smc1aQ9CU62 Rmdn3-201ENSMUST00000094695 2249 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
Smc1aQ9CU62 Dut-201ENSMUST00000051605 1950 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
Smc1aQ9CU62 Rev1-201ENSMUST00000027251 4262 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
Smc1aQ9CU62 Myo9b-206ENSMUST00000212935 6316 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.59
Smc1aQ9CU62 Map4k5-201ENSMUST00000049239 4452 ntAPPRIS ALT1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Smc1aQ9CU62 Pigs-201ENSMUST00000048073 2501 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Smc1aQ9CU62 Elac2-202ENSMUST00000101049 2884 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
Smc1aQ9CU62 Relt-201ENSMUST00000008462 2851 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Smc1aQ9CU62 Adam15-203ENSMUST00000107446 1686 ntTSL 5 BASIC18.76■□□□□ 0.59
Smc1aQ9CU62 Lrrc43-202ENSMUST00000121444 2016 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
Smc1aQ9CU62 Fam57b-207ENSMUST00000207020 1777 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Smc1aQ9CU62 4930448E22Rik-202ENSMUST00000215242 2102 ntTSL 5 BASIC18.76■□□□□ 0.59
Smc1aQ9CU62 Gm11273-201ENSMUST00000044043 390 ntAPPRIS P1 BASIC18.76■□□□□ 0.59
Smc1aQ9CU62 Rnf146-202ENSMUST00000160144 4323 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Smc1aQ9CU62 Zdhhc2-201ENSMUST00000049389 3381 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Smc1aQ9CU62 She-201ENSMUST00000050401 5733 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Smc1aQ9CU62 Met-203ENSMUST00000115443 6809 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
Smc1aQ9CU62 Tmem163-203ENSMUST00000160616 2657 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
Smc1aQ9CU62 Krt80-201ENSMUST00000077196 1774 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Smc1aQ9CU62 Kcnq2-201ENSMUST00000016491 3067 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Smc1aQ9CU62 Acp5-204ENSMUST00000213815 1419 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
Smc1aQ9CU62 Acp5-206ENSMUST00000217643 1447 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
Smc1aQ9CU62 Cdh24-201ENSMUST00000067784 3489 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
Smc1aQ9CU62 Hace1-201ENSMUST00000037044 3785 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Smc1aQ9CU62 Tmem229a-201ENSMUST00000127247 5157 ntAPPRIS P1 BASIC18.75■□□□□ 0.59
Smc1aQ9CU62 Rrbp1-201ENSMUST00000016072 5177 ntAPPRIS P4 TSL 5 BASIC18.75■□□□□ 0.59
Smc1aQ9CU62 Spata6-201ENSMUST00000038868 2466 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Smc1aQ9CU62 Susd1-202ENSMUST00000107544 3220 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
Smc1aQ9CU62 Gm10013-201ENSMUST00000106074 672 ntBASIC18.75■□□□□ 0.59
Smc1aQ9CU62 Tsfm-202ENSMUST00000120547 1271 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Smc1aQ9CU62 Gm23634-201ENSMUST00000175071 91 ntBASIC18.75■□□□□ 0.59
Smc1aQ9CU62 Gm45058-201ENSMUST00000205810 766 ntBASIC18.75■□□□□ 0.59
Smc1aQ9CU62 Grtp1-204ENSMUST00000209691 1030 ntTSL 5 BASIC18.75■□□□□ 0.59
Smc1aQ9CU62 Wdr1-201ENSMUST00000005234 3089 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Smc1aQ9CU62 Gabpa-201ENSMUST00000009120 4987 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Smc1aQ9CU62 Fmnl3-202ENSMUST00000088233 4423 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
Smc1aQ9CU62 Etnk1-201ENSMUST00000032413 6433 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Smc1aQ9CU62 Dtx2-203ENSMUST00000111144 2545 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
Smc1aQ9CU62 9330151L19Rik-201ENSMUST00000181850 2545 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Smc1aQ9CU62 Agxt-201ENSMUST00000027491 1553 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Smc1aQ9CU62 Cdv3-202ENSMUST00000072249 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
Smc1aQ9CU62 Anapc2-201ENSMUST00000028341 3004 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Smc1aQ9CU62 Tmem233-201ENSMUST00000111997 2477 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
Smc1aQ9CU62 Wipi2-201ENSMUST00000036872 5171 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Smc1aQ9CU62 Nfkbid-201ENSMUST00000046177 2039 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
Smc1aQ9CU62 Acbd4-201ENSMUST00000024492 2075 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
Smc1aQ9CU62 Itsn1-203ENSMUST00000095909 6103 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Retrieved 100 of 76,532 protein–RNA pairs in 36.2 ms