Protein–RNA interactions for Protein: Q99PQ2

Trim11, E3 ubiquitin-protein ligase TRIM11, mousemouse

Predictions only

Length 467 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim11Q99PQ2 Rab11fip4-201ENSMUST00000017783 7156 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Trim11Q99PQ2 Git2-215ENSMUST00000178440 4944 ntTSL 5 BASIC19.15■□□□□ 0.66
Trim11Q99PQ2 Git2-201ENSMUST00000043283 4938 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Trim11Q99PQ2 Smim10l1-201ENSMUST00000100864 2842 ntAPPRIS P1 BASIC19.15■□□□□ 0.66
Trim11Q99PQ2 Pex11a-201ENSMUST00000032761 2241 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Trim11Q99PQ2 B4galnt4-201ENSMUST00000048002 3556 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
Trim11Q99PQ2 Thsd7a-202ENSMUST00000119581 5678 ntAPPRIS P2 TSL 5 BASIC19.14■□□□□ 0.66
Trim11Q99PQ2 Rbck1-202ENSMUST00000109847 2384 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
Trim11Q99PQ2 Adamtsl1-201ENSMUST00000048885 1842 ntTSL 5 BASIC19.14■□□□□ 0.65
Trim11Q99PQ2 Cacna1b-204ENSMUST00000102939 9736 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.65
Trim11Q99PQ2 Gm27011-201ENSMUST00000182352 972 ntBASIC19.14■□□□□ 0.65
Trim11Q99PQ2 Ccnd2-204ENSMUST00000201637 1006 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Trim11Q99PQ2 Arhgef4-208ENSMUST00000211073 171 ntBASIC19.14■□□□□ 0.65
Trim11Q99PQ2 Arhgef33-211ENSMUST00000225658 473 ntBASIC19.14■□□□□ 0.65
Trim11Q99PQ2 Lat-201ENSMUST00000032997 1235 ntAPPRIS P2 TSL 1 (best) BASIC19.14■□□□□ 0.65
Trim11Q99PQ2 Crabp1-201ENSMUST00000034830 802 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Trim11Q99PQ2 Coro7-202ENSMUST00000090480 1147 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Trim11Q99PQ2 Trim31-201ENSMUST00000078438 2257 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Trim11Q99PQ2 Fgfr1-214ENSMUST00000178276 4741 ntTSL 5 BASIC19.14■□□□□ 0.65
Trim11Q99PQ2 Gtpbp3-208ENSMUST00000168847 2803 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.65
Trim11Q99PQ2 Usb1-201ENSMUST00000034245 1758 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Trim11Q99PQ2 Ephb4-203ENSMUST00000111055 4296 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
Trim11Q99PQ2 Rasa2-201ENSMUST00000034984 5813 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Trim11Q99PQ2 Ccdc184-201ENSMUST00000031914 2329 ntAPPRIS P1 BASIC19.13■□□□□ 0.65
Trim11Q99PQ2 Pid1-201ENSMUST00000168574 2664 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Trim11Q99PQ2 Ndufa12-201ENSMUST00000020209 1110 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Trim11Q99PQ2 Kcmf1-206ENSMUST00000206378 544 ntTSL 5 BASIC19.13■□□□□ 0.65
Trim11Q99PQ2 Id1-201ENSMUST00000038368 934 ntAPPRIS P2 TSL 1 (best) BASIC19.13■□□□□ 0.65
Trim11Q99PQ2 Gm16861-201ENSMUST00000181498 1647 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Trim11Q99PQ2 Irak1-205ENSMUST00000114353 1896 ntAPPRIS ALT2 TSL 5 BASIC19.13■□□□□ 0.65
Trim11Q99PQ2 Rasgrp2-201ENSMUST00000035716 2219 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
Trim11Q99PQ2 Snx30-201ENSMUST00000030080 7314 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Trim11Q99PQ2 Men1-205ENSMUST00000113501 2508 ntTSL 5 BASIC19.13■□□□□ 0.65
Trim11Q99PQ2 Arntl-204ENSMUST00000210238 2976 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
Trim11Q99PQ2 Cask-201ENSMUST00000033321 4057 ntTSL 5 BASIC19.13■□□□□ 0.65
Trim11Q99PQ2 Smad3-201ENSMUST00000034973 5090 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Trim11Q99PQ2 Ell2-201ENSMUST00000001583 4382 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Trim11Q99PQ2 Phtf1-201ENSMUST00000055425 3060 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
Trim11Q99PQ2 Gm26596-201ENSMUST00000180464 2655 ntBASIC19.12■□□□□ 0.65
Trim11Q99PQ2 Gas6-201ENSMUST00000033828 2548 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Trim11Q99PQ2 Platr31-201ENSMUST00000180653 1466 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
Trim11Q99PQ2 Cenps-202ENSMUST00000105695 544 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
Trim11Q99PQ2 Gapdh-202ENSMUST00000117757 1273 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
Trim11Q99PQ2 Gm21814-202ENSMUST00000203277 873 ntBASIC19.12■□□□□ 0.65
Trim11Q99PQ2 Mbnl1-201ENSMUST00000099087 5655 ntAPPRIS P2 TSL 1 (best) BASIC19.12■□□□□ 0.65
Trim11Q99PQ2 Hipk2-206ENSMUST00000161779 7684 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
Trim11Q99PQ2 Zbtb9-201ENSMUST00000120016 2798 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Trim11Q99PQ2 Rab37-202ENSMUST00000067754 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
Trim11Q99PQ2 Snx16-201ENSMUST00000029047 2288 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
Trim11Q99PQ2 Zic3-202ENSMUST00000088629 1951 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
Trim11Q99PQ2 Ppp4r3a-201ENSMUST00000048305 4516 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Trim11Q99PQ2 Gprc5b-201ENSMUST00000008878 4518 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
Trim11Q99PQ2 Stam2-202ENSMUST00000127316 1928 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
Trim11Q99PQ2 Pole4-201ENSMUST00000095786 1769 ntAPPRIS P2 TSL 1 (best) BASIC19.11■□□□□ 0.65
Trim11Q99PQ2 Lrch3-211ENSMUST00000170899 2752 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
Trim11Q99PQ2 Etnk1-201ENSMUST00000032413 6433 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Trim11Q99PQ2 Trim25-202ENSMUST00000100627 1433 ntTSL 5 BASIC19.11■□□□□ 0.65
Trim11Q99PQ2 Zkscan2-203ENSMUST00000128217 2218 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
Trim11Q99PQ2 Mir5122-201ENSMUST00000175004 89 ntBASIC19.11■□□□□ 0.65
Trim11Q99PQ2 Gm45148-201ENSMUST00000208578 513 ntTSL 5 BASIC19.11■□□□□ 0.65
Trim11Q99PQ2 Cldn22-201ENSMUST00000038693 995 ntAPPRIS P1 BASIC19.11■□□□□ 0.65
Trim11Q99PQ2 Brd3os-202ENSMUST00000209765 1898 ntAPPRIS P1 BASIC19.11■□□□□ 0.65
Trim11Q99PQ2 Cldn4-201ENSMUST00000051401 1816 ntAPPRIS P1 BASIC19.11■□□□□ 0.65
Trim11Q99PQ2 Erich2-201ENSMUST00000100041 1749 ntAPPRIS P2 TSL 1 (best) BASIC19.11■□□□□ 0.65
Trim11Q99PQ2 Mrpl49-201ENSMUST00000007482 1722 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Trim11Q99PQ2 Ptpro-203ENSMUST00000167679 5096 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
Trim11Q99PQ2 Pigl-201ENSMUST00000014389 2174 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Trim11Q99PQ2 Rsph3a-201ENSMUST00000097423 2189 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Trim11Q99PQ2 Casp3-201ENSMUST00000093517 1520 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Trim11Q99PQ2 Shq1-202ENSMUST00000113312 6816 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Trim11Q99PQ2 Cog6-204ENSMUST00000193432 2078 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
Trim11Q99PQ2 Tnks-201ENSMUST00000033929 9163 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Trim11Q99PQ2 A930003O13Rik-203ENSMUST00000199056 1955 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
Trim11Q99PQ2 Cldn7-201ENSMUST00000018713 1335 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Trim11Q99PQ2 Strn-203ENSMUST00000145910 8629 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Trim11Q99PQ2 Aipl1-201ENSMUST00000048207 2309 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Trim11Q99PQ2 Ern1-203ENSMUST00000106800 654 ntTSL 3 BASIC19.1■□□□□ 0.65
Trim11Q99PQ2 Zfp787-204ENSMUST00000207628 576 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
Trim11Q99PQ2 Pigf-201ENSMUST00000024957 988 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Trim11Q99PQ2 B4galt3-205ENSMUST00000126699 1758 ntTSL 5 BASIC19.1■□□□□ 0.65
Trim11Q99PQ2 Stxbp3-205ENSMUST00000138552 1789 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
Trim11Q99PQ2 Ctcf-201ENSMUST00000005841 3782 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Trim11Q99PQ2 Sufu-202ENSMUST00000111867 1747 ntAPPRIS ALT1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Trim11Q99PQ2 Sec14l1-203ENSMUST00000103026 2589 ntAPPRIS ALT2 TSL 5 BASIC19.1■□□□□ 0.65
Trim11Q99PQ2 Pigt-201ENSMUST00000103101 2562 ntAPPRIS P2 TSL 1 (best) BASIC19.1■□□□□ 0.65
Trim11Q99PQ2 Synpo-206ENSMUST00000130360 5159 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
Trim11Q99PQ2 Sik3-204ENSMUST00000126865 6287 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Trim11Q99PQ2 Dok4-201ENSMUST00000046461 2590 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Trim11Q99PQ2 Mef2d-203ENSMUST00000107559 1791 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
Trim11Q99PQ2 Tekt1-203ENSMUST00000108503 1397 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Trim11Q99PQ2 Esrrb-201ENSMUST00000021680 2136 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
Trim11Q99PQ2 Pih1d2-201ENSMUST00000000171 1256 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Trim11Q99PQ2 Gm17949-201ENSMUST00000210548 1179 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
Trim11Q99PQ2 Tollip-202ENSMUST00000055819 1100 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
Trim11Q99PQ2 Gm8909-202ENSMUST00000097335 1182 ntAPPRIS ALT2 TSL 5 BASIC19.09■□□□□ 0.65
Trim11Q99PQ2 Snip1-201ENSMUST00000052183 2345 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Trim11Q99PQ2 Slbp-203ENSMUST00000101354 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
Trim11Q99PQ2 Bcap29-201ENSMUST00000020979 1949 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Trim11Q99PQ2 Luc7l2-208ENSMUST00000161538 4253 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
Trim11Q99PQ2 Gnaz-201ENSMUST00000037813 3519 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Retrieved 100 of 76,532 protein–RNA pairs in 41.1 ms