Protein–RNA interactions for Protein: Q99LM2

Cdk5rap3, CDK5 regulatory subunit-associated protein 3, mousemouse

Predictions only

Length 503 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdk5rap3Q99LM2 Krt84-201ENSMUST00000023720 2570 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Cdk5rap3Q99LM2 March3-202ENSMUST00000102912 1754 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
Cdk5rap3Q99LM2 Shisa7-201ENSMUST00000066041 6006 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
Cdk5rap3Q99LM2 Prss33-201ENSMUST00000059906 1360 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Cdk5rap3Q99LM2 Wnt1-201ENSMUST00000023734 2378 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Cdk5rap3Q99LM2 Txndc11-201ENSMUST00000038424 3095 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Cdk5rap3Q99LM2 Wdr1-201ENSMUST00000005234 3089 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Cdk5rap3Q99LM2 Cep104-201ENSMUST00000047497 5151 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Cdk5rap3Q99LM2 Ryr2-203ENSMUST00000220597 4924 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
Cdk5rap3Q99LM2 Gm5643-201ENSMUST00000117081 966 ntBASIC17.43■□□□□ 0.38
Cdk5rap3Q99LM2 Josd2-206ENSMUST00000121922 684 ntTSL 5 BASIC17.43■□□□□ 0.38
Cdk5rap3Q99LM2 Dusp15-201ENSMUST00000037715 715 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
Cdk5rap3Q99LM2 Bcor-202ENSMUST00000065143 6839 ntAPPRIS P4 TSL 1 (best) BASIC17.43■□□□□ 0.38
Cdk5rap3Q99LM2 Sec14l1-203ENSMUST00000103026 2589 ntAPPRIS ALT2 TSL 5 BASIC17.43■□□□□ 0.38
Cdk5rap3Q99LM2 Glt28d2-201ENSMUST00000033643 2732 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Cdk5rap3Q99LM2 Nsmf-207ENSMUST00000116574 2863 ntTSL 5 BASIC17.43■□□□□ 0.38
Cdk5rap3Q99LM2 A830073O21Rik-202ENSMUST00000205693 3096 ntBASIC17.43■□□□□ 0.38
Cdk5rap3Q99LM2 Gm6093-201ENSMUST00000221792 1623 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
Cdk5rap3Q99LM2 Arhgap42-201ENSMUST00000093893 6116 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Cdk5rap3Q99LM2 Slc27a1-207ENSMUST00000212889 2730 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Cdk5rap3Q99LM2 Cnpy1-202ENSMUST00000118882 1984 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Cdk5rap3Q99LM2 Grina-201ENSMUST00000023225 1693 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Cdk5rap3Q99LM2 Mid1ip1-202ENSMUST00000115524 2022 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Cdk5rap3Q99LM2 Tulp1-202ENSMUST00000114794 1738 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Cdk5rap3Q99LM2 Kank3-202ENSMUST00000172649 2652 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Cdk5rap3Q99LM2 Rbbp7-202ENSMUST00000112326 1430 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Cdk5rap3Q99LM2 Ankra2-204ENSMUST00000150352 2217 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Cdk5rap3Q99LM2 Nat8l-201ENSMUST00000056355 6529 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Cdk5rap3Q99LM2 Ypel3-204ENSMUST00000106359 469 ntTSL 5 BASIC17.42■□□□□ 0.38
Cdk5rap3Q99LM2 Gm15378-201ENSMUST00000121894 207 ntBASIC17.42■□□□□ 0.38
Cdk5rap3Q99LM2 Mtif3-201ENSMUST00000016654 2131 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Cdk5rap3Q99LM2 Shc1-202ENSMUST00000094378 2617 ntAPPRIS ALT1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Cdk5rap3Q99LM2 Dvl2-201ENSMUST00000019362 2968 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Cdk5rap3Q99LM2 Asph-210ENSMUST00000108337 2836 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Cdk5rap3Q99LM2 Tnfrsf25-201ENSMUST00000025706 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
Cdk5rap3Q99LM2 Ap1g1-202ENSMUST00000093157 6899 ntAPPRIS P3 TSL 5 BASIC17.42■□□□□ 0.38
Cdk5rap3Q99LM2 Nox4-202ENSMUST00000068829 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
Cdk5rap3Q99LM2 Sufu-202ENSMUST00000111867 1747 ntAPPRIS ALT1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Cdk5rap3Q99LM2 Hdhd2-202ENSMUST00000097521 1716 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Cdk5rap3Q99LM2 Apaf1-202ENSMUST00000159110 6433 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
Cdk5rap3Q99LM2 Gm26917-202ENSMUST00000192833 3329 ntBASIC17.41■□□□□ 0.38
Cdk5rap3Q99LM2 Eml2-201ENSMUST00000048502 2275 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
Cdk5rap3Q99LM2 Bmt2-202ENSMUST00000203078 4462 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
Cdk5rap3Q99LM2 Sh2b3-201ENSMUST00000040308 2530 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
Cdk5rap3Q99LM2 Atp5g1-203ENSMUST00000107686 691 ntAPPRIS P1 TSL 3 BASIC17.41■□□□□ 0.38
Cdk5rap3Q99LM2 Rpl36al-202ENSMUST00000110619 1276 ntAPPRIS P1 BASIC17.41■□□□□ 0.38
Cdk5rap3Q99LM2 Cox16-207ENSMUST00000169124 685 ntTSL 2 BASIC17.41■□□□□ 0.38
Cdk5rap3Q99LM2 AC135637.1-201ENSMUST00000227750 365 ntBASIC17.41■□□□□ 0.38
Cdk5rap3Q99LM2 Fam167b-201ENSMUST00000052835 913 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Cdk5rap3Q99LM2 Gm10638-201ENSMUST00000098532 905 ntAPPRIS P1 BASIC17.41■□□□□ 0.38
Cdk5rap3Q99LM2 Klhl40-201ENSMUST00000098272 2370 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Cdk5rap3Q99LM2 Chsy3-201ENSMUST00000080721 2931 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Cdk5rap3Q99LM2 Whrn-201ENSMUST00000063650 4016 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
Cdk5rap3Q99LM2 Stam-202ENSMUST00000102960 5000 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
Cdk5rap3Q99LM2 Nisch-208ENSMUST00000165981 2415 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
Cdk5rap3Q99LM2 Mag-203ENSMUST00000187137 2434 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
Cdk5rap3Q99LM2 Gm16638-201ENSMUST00000148687 1865 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Cdk5rap3Q99LM2 Gm10435-202ENSMUST00000162526 2878 ntTSL 5 BASIC17.41■□□□□ 0.38
Cdk5rap3Q99LM2 Gnb1-202ENSMUST00000105616 3088 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Cdk5rap3Q99LM2 Foxq1-201ENSMUST00000042118 4843 ntAPPRIS P1 BASIC17.41■□□□□ 0.38
Cdk5rap3Q99LM2 Hap1-201ENSMUST00000103124 2120 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
Cdk5rap3Q99LM2 Sptbn4-202ENSMUST00000108362 4861 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Cdk5rap3Q99LM2 Ccdc124-201ENSMUST00000007865 1356 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Cdk5rap3Q99LM2 Mettl27-204ENSMUST00000111219 1790 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Cdk5rap3Q99LM2 Mef2d-201ENSMUST00000001455 5401 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Cdk5rap3Q99LM2 Wdr41-205ENSMUST00000160801 3062 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
Cdk5rap3Q99LM2 Wdr41-201ENSMUST00000056512 3063 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Cdk5rap3Q99LM2 Ifrd2-201ENSMUST00000010192 2056 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Cdk5rap3Q99LM2 Glis1-201ENSMUST00000046005 2906 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
Cdk5rap3Q99LM2 Nptx2-201ENSMUST00000071782 2536 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Cdk5rap3Q99LM2 Cul1-201ENSMUST00000031697 3161 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Cdk5rap3Q99LM2 Gm15908-201ENSMUST00000154345 1091 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Cdk5rap3Q99LM2 Pdk3-201ENSMUST00000045748 2115 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Cdk5rap3Q99LM2 Usp32-202ENSMUST00000108075 7053 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
Cdk5rap3Q99LM2 Ankrd29-201ENSMUST00000118525 3242 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Cdk5rap3Q99LM2 Clip2-202ENSMUST00000100647 4994 ntAPPRIS P4 TSL 1 (best) BASIC17.4■□□□□ 0.38
Cdk5rap3Q99LM2 Fosl2-201ENSMUST00000031017 6537 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Cdk5rap3Q99LM2 Ebf1-203ENSMUST00000109268 2864 ntAPPRIS ALT1 TSL 5 BASIC17.4■□□□□ 0.38
Cdk5rap3Q99LM2 Pacs2-202ENSMUST00000220541 3101 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
Cdk5rap3Q99LM2 Nrg3-201ENSMUST00000166968 4011 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
Cdk5rap3Q99LM2 Ngly1-201ENSMUST00000022310 2935 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
Cdk5rap3Q99LM2 Zdhhc2-201ENSMUST00000049389 3381 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Cdk5rap3Q99LM2 Gna12-201ENSMUST00000000153 3416 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Cdk5rap3Q99LM2 Sim1-202ENSMUST00000219436 1687 ntTSL 5 BASIC17.39■□□□□ 0.37
Cdk5rap3Q99LM2 Kif5b-201ENSMUST00000025083 6032 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Cdk5rap3Q99LM2 Ubr3-201ENSMUST00000055758 8072 ntAPPRIS P2 TSL 1 (best) BASIC17.39■□□□□ 0.37
Cdk5rap3Q99LM2 Uts2r-201ENSMUST00000039044 1703 ntAPPRIS P1 BASIC17.39■□□□□ 0.37
Cdk5rap3Q99LM2 Gprc5b-201ENSMUST00000008878 4518 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
Cdk5rap3Q99LM2 Napa-201ENSMUST00000006181 2517 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Cdk5rap3Q99LM2 Arl6ip4-202ENSMUST00000122394 982 ntAPPRIS ALT2 TSL 5 BASIC17.39■□□□□ 0.37
Cdk5rap3Q99LM2 Gm16105-201ENSMUST00000156926 697 ntTSL 3 BASIC17.39■□□□□ 0.37
Cdk5rap3Q99LM2 Gm10698-201ENSMUST00000182663 604 ntBASIC17.39■□□□□ 0.37
Cdk5rap3Q99LM2 Spout1-201ENSMUST00000100220 1805 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Cdk5rap3Q99LM2 Aqp1-201ENSMUST00000004774 2627 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Cdk5rap3Q99LM2 Rab7-203ENSMUST00000113597 1859 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Cdk5rap3Q99LM2 Arhgef9-216ENSMUST00000197206 2227 ntTSL 5 BASIC17.39■□□□□ 0.37
Cdk5rap3Q99LM2 Sphk1-202ENSMUST00000063446 2527 ntAPPRIS ALT2 TSL 2 BASIC17.39■□□□□ 0.37
Cdk5rap3Q99LM2 H2-Q10-202ENSMUST00000174525 1991 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
Cdk5rap3Q99LM2 Galnt13-202ENSMUST00000112634 7639 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Cdk5rap3Q99LM2 Pagr1a-202ENSMUST00000200948 1430 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Retrieved 100 of 76,532 protein–RNA pairs in 42.3 ms