Protein–RNA interactions for Protein: Q8C0E3

Trim47, Tripartite motif-containing protein 47, mousemouse

Predictions only

Length 641 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim47Q8C0E3 Stx3-208ENSMUST00000211641 1018 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Trim47Q8C0E3 Nthl1-201ENSMUST00000047611 1080 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Trim47Q8C0E3 Pym1-201ENSMUST00000065210 1156 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
Trim47Q8C0E3 Fthl17f-201ENSMUST00000097029 847 ntAPPRIS P1 BASIC18.64■□□□□ 0.57
Trim47Q8C0E3 Axin1-203ENSMUST00000163421 2890 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.57
Trim47Q8C0E3 Mink1-201ENSMUST00000072237 4994 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.57
Trim47Q8C0E3 6430573F11Rik-202ENSMUST00000135373 2573 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Trim47Q8C0E3 4833418N02Rik-202ENSMUST00000146560 1495 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Trim47Q8C0E3 AU022751-202ENSMUST00000117544 2201 ntAPPRIS P4 BASIC18.64■□□□□ 0.57
Trim47Q8C0E3 A430078I02Rik-202ENSMUST00000154066 2233 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Trim47Q8C0E3 Gprin1-202ENSMUST00000135343 4248 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Trim47Q8C0E3 Pitpnm1-201ENSMUST00000049658 4206 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Trim47Q8C0E3 Nrxn1-217ENSMUST00000174337 3021 ntTSL 5 BASIC18.63■□□□□ 0.57
Trim47Q8C0E3 Cbarp-201ENSMUST00000105369 3121 ntAPPRIS P2 TSL 5 BASIC18.63■□□□□ 0.57
Trim47Q8C0E3 Ccdc106-204ENSMUST00000207974 2492 ntTSL 2 BASIC18.63■□□□□ 0.57
Trim47Q8C0E3 Scrib-202ENSMUST00000063747 5440 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
Trim47Q8C0E3 Gm11620-201ENSMUST00000118770 1845 ntBASIC18.63■□□□□ 0.57
Trim47Q8C0E3 Isl2-201ENSMUST00000034869 1854 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Trim47Q8C0E3 Gm33142-201ENSMUST00000193913 867 ntBASIC18.63■□□□□ 0.57
Trim47Q8C0E3 Gm21362-201ENSMUST00000194272 928 ntBASIC18.63■□□□□ 0.57
Trim47Q8C0E3 Flt3l-206ENSMUST00000210197 834 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
Trim47Q8C0E3 Fem1c-201ENSMUST00000036226 5726 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Trim47Q8C0E3 5830415G21Rik-201ENSMUST00000192543 1332 ntBASIC18.63■□□□□ 0.57
Trim47Q8C0E3 Gm6190-201ENSMUST00000220683 1374 ntBASIC18.63■□□□□ 0.57
Trim47Q8C0E3 Spats2l-212ENSMUST00000170139 2315 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
Trim47Q8C0E3 Gpd1-203ENSMUST00000162194 1515 ntTSL 5 BASIC18.63■□□□□ 0.57
Trim47Q8C0E3 Pid1-201ENSMUST00000168574 2664 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Trim47Q8C0E3 Tmx1-201ENSMUST00000021471 2795 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Trim47Q8C0E3 Senp3-202ENSMUST00000066760 2219 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Trim47Q8C0E3 Asap2-204ENSMUST00000101562 5552 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
Trim47Q8C0E3 Meis2-202ENSMUST00000074285 2844 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Trim47Q8C0E3 Ppp2r5d-201ENSMUST00000002839 2926 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Trim47Q8C0E3 Col15a1-202ENSMUST00000102917 5172 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
Trim47Q8C0E3 Rmnd1-201ENSMUST00000042251 3139 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Trim47Q8C0E3 Calu-207ENSMUST00000173216 673 ntTSL 5 BASIC18.62■□□□□ 0.57
Trim47Q8C0E3 Nudt21-204ENSMUST00000212981 1184 ntTSL 3 BASIC18.62■□□□□ 0.57
Trim47Q8C0E3 AC122351.1-201ENSMUST00000220467 126 ntBASIC18.62■□□□□ 0.57
Trim47Q8C0E3 AC156576.2-201ENSMUST00000222752 503 ntTSL 5 BASIC18.62■□□□□ 0.57
Trim47Q8C0E3 Fam213b-201ENSMUST00000030935 883 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Trim47Q8C0E3 Znhit1-202ENSMUST00000085941 740 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Trim47Q8C0E3 Casp3-201ENSMUST00000093517 1520 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Trim47Q8C0E3 Prss12-201ENSMUST00000029603 2602 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Trim47Q8C0E3 Uhmk1-202ENSMUST00000123399 7775 ntTSL 5 BASIC18.61■□□□□ 0.57
Trim47Q8C0E3 Tbcel-201ENSMUST00000066148 5000 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Trim47Q8C0E3 Fbxo33-201ENSMUST00000043204 3688 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Trim47Q8C0E3 Asph-204ENSMUST00000084915 2884 ntTSL 5 BASIC18.61■□□□□ 0.57
Trim47Q8C0E3 Slc16a7-205ENSMUST00000210780 2562 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
Trim47Q8C0E3 Vsig10l-204ENSMUST00000203769 2473 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
Trim47Q8C0E3 Slc6a8-206ENSMUST00000164449 2151 ntTSL 5 BASIC18.61■□□□□ 0.57
Trim47Q8C0E3 Trim44-201ENSMUST00000102573 5612 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Trim47Q8C0E3 Il17re-201ENSMUST00000053569 1898 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Trim47Q8C0E3 Gm9917-202ENSMUST00000181099 1499 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Trim47Q8C0E3 Taco1os-201ENSMUST00000140736 644 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Trim47Q8C0E3 Gm17808-201ENSMUST00000200859 894 ntBASIC18.61■□□□□ 0.57
Trim47Q8C0E3 Pgpep1-208ENSMUST00000211715 676 ntTSL 3 BASIC18.61■□□□□ 0.57
Trim47Q8C0E3 AC156832.2-201ENSMUST00000216217 1295 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Trim47Q8C0E3 Tmem270-201ENSMUST00000047305 932 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Trim47Q8C0E3 Gm7367-201ENSMUST00000057611 492 ntBASIC18.61■□□□□ 0.57
Trim47Q8C0E3 Lce1i-201ENSMUST00000090866 731 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Trim47Q8C0E3 Cul4a-201ENSMUST00000016680 3728 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Trim47Q8C0E3 Apbb1-214ENSMUST00000189378 2878 ntAPPRIS ALT1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Trim47Q8C0E3 Yars2-204ENSMUST00000159962 2805 ntTSL 2 BASIC18.61■□□□□ 0.57
Trim47Q8C0E3 Napa-201ENSMUST00000006181 2517 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Trim47Q8C0E3 Gm16638-201ENSMUST00000148687 1865 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Trim47Q8C0E3 Sult2b1-204ENSMUST00000209739 1858 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
Trim47Q8C0E3 Gm16835-201ENSMUST00000140488 2809 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Trim47Q8C0E3 Rragd-201ENSMUST00000029946 5055 ntTSL 5 BASIC18.6■□□□□ 0.57
Trim47Q8C0E3 Iqcd-202ENSMUST00000094391 1673 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
Trim47Q8C0E3 Myrip-201ENSMUST00000048121 4906 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Trim47Q8C0E3 Plppr2-201ENSMUST00000046371 2626 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Trim47Q8C0E3 Kctd9-205ENSMUST00000152243 2528 ntTSL 2 BASIC18.6■□□□□ 0.57
Trim47Q8C0E3 Cryl1-201ENSMUST00000022517 1497 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Trim47Q8C0E3 Snip1-201ENSMUST00000052183 2345 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Trim47Q8C0E3 Ager-201ENSMUST00000015596 1370 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
Trim47Q8C0E3 Tekt5-202ENSMUST00000115831 1277 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
Trim47Q8C0E3 Gm44450-201ENSMUST00000199528 114 ntBASIC18.6■□□□□ 0.57
Trim47Q8C0E3 Mapkapk3-201ENSMUST00000035194 2816 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Trim47Q8C0E3 Hps4-201ENSMUST00000035279 2836 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Trim47Q8C0E3 Col15a1-201ENSMUST00000082303 5102 ntAPPRIS ALT2 TSL 2 BASIC18.6■□□□□ 0.57
Trim47Q8C0E3 Kdm1a-202ENSMUST00000105847 3028 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
Trim47Q8C0E3 Ecel1-204ENSMUST00000161002 3033 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Trim47Q8C0E3 Pick1-206ENSMUST00000166155 1699 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Trim47Q8C0E3 D730003I15Rik-202ENSMUST00000194375 1667 ntBASIC18.6■□□□□ 0.57
Trim47Q8C0E3 Mst1-204ENSMUST00000162886 2209 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
Trim47Q8C0E3 Ahcyl2-202ENSMUST00000102995 5155 ntAPPRIS ALT1 TSL 5 BASIC18.59■□□□□ 0.57
Trim47Q8C0E3 Ispd-201ENSMUST00000062041 2690 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
Trim47Q8C0E3 Atp2c1-204ENSMUST00000112558 5642 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
Trim47Q8C0E3 Proca1-203ENSMUST00000108317 1359 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
Trim47Q8C0E3 Gm6623-201ENSMUST00000173570 544 ntBASIC18.59■□□□□ 0.57
Trim47Q8C0E3 Gm28793-201ENSMUST00000190845 413 ntTSL 5 BASIC18.59■□□□□ 0.57
Trim47Q8C0E3 Gm44973-201ENSMUST00000207050 1003 ntAPPRIS P1 TSL 3 BASIC18.59■□□□□ 0.57
Trim47Q8C0E3 BC048679-203ENSMUST00000207871 567 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
Trim47Q8C0E3 Gm18115-201ENSMUST00000221209 621 ntBASIC18.59■□□□□ 0.57
Trim47Q8C0E3 Tsr3-201ENSMUST00000063574 1192 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Trim47Q8C0E3 C1qbp-201ENSMUST00000078528 1175 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Trim47Q8C0E3 Sri-205ENSMUST00000148633 2251 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Trim47Q8C0E3 Abcg5-202ENSMUST00000163375 1613 ntTSL 5 BASIC18.59■□□□□ 0.57
Trim47Q8C0E3 Cacul1-201ENSMUST00000081790 5790 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
Trim47Q8C0E3 Rbpms-201ENSMUST00000033994 2375 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Trim47Q8C0E3 Rusc1-203ENSMUST00000166687 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
Retrieved 100 of 76,532 protein–RNA pairs in 31.2 ms