Protein–RNA interactions for Protein: Q3U1J4

Ddb1, DNA damage-binding protein 1, mousemouse

Known RBP Predictions only

Length 1,140 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddb1Q3U1J4 Gm16838-201ENSMUST00000144594 816 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
Ddb1Q3U1J4 Ankrd65-202ENSMUST00000165000 1140 ntAPPRIS ALT2 TSL 5 BASIC21.36■■□□□ 1.01
Ddb1Q3U1J4 Gm20646-202ENSMUST00000199521 660 ntTSL 3 BASIC21.36■■□□□ 1.01
Ddb1Q3U1J4 4931406C07Rik-209ENSMUST00000217042 691 ntTSL 3 BASIC21.36■■□□□ 1.01
Ddb1Q3U1J4 Igflr1-201ENSMUST00000043850 1186 ntAPPRIS P2 TSL 1 (best) BASIC21.36■■□□□ 1.01
Ddb1Q3U1J4 Pou3f1-201ENSMUST00000053491 3849 ntAPPRIS P1 BASIC21.36■■□□□ 1.01
Ddb1Q3U1J4 Mrgpra9-201ENSMUST00000098436 1049 ntAPPRIS ALT2 TSL 5 BASIC21.36■■□□□ 1.01
Ddb1Q3U1J4 Acbd4-201ENSMUST00000024492 2075 ntAPPRIS P1 TSL 5 BASIC21.36■■□□□ 1.01
Ddb1Q3U1J4 Zfp623-201ENSMUST00000037260 2463 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Ddb1Q3U1J4 Gm29430-202ENSMUST00000191453 2015 ntTSL 5 BASIC21.36■■□□□ 1.01
Ddb1Q3U1J4 Sfrp2-201ENSMUST00000029625 2003 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Ddb1Q3U1J4 Fbxw8-201ENSMUST00000049474 5000 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Ddb1Q3U1J4 Slc39a1-201ENSMUST00000015467 2364 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Ddb1Q3U1J4 Creg1-202ENSMUST00000111432 2163 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Ddb1Q3U1J4 Igsf23-201ENSMUST00000043440 1908 ntAPPRIS P2 TSL 1 (best) BASIC21.35■■□□□ 1.01
Ddb1Q3U1J4 Nmur1-203ENSMUST00000212541 1534 ntTSL 5 BASIC21.35■■□□□ 1.01
Ddb1Q3U1J4 Lmtk3-204ENSMUST00000209617 5051 ntAPPRIS ALT2 TSL 1 (best) BASIC21.35■■□□□ 1.01
Ddb1Q3U1J4 Prss8-201ENSMUST00000032988 1852 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Ddb1Q3U1J4 Ccl27a-202ENSMUST00000108032 350 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
Ddb1Q3U1J4 Gm4189-202ENSMUST00000174167 367 ntTSL 3 BASIC21.35■■□□□ 1.01
Ddb1Q3U1J4 Gm6550-201ENSMUST00000187574 993 ntBASIC21.35■■□□□ 1.01
Ddb1Q3U1J4 Gm37584-201ENSMUST00000193595 1290 ntBASIC21.35■■□□□ 1.01
Ddb1Q3U1J4 Prdm5-203ENSMUST00000081219 984 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
Ddb1Q3U1J4 Tmem44-204ENSMUST00000140402 2405 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Ddb1Q3U1J4 Ube2j2-203ENSMUST00000105581 1391 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Ddb1Q3U1J4 Nrxn2-205ENSMUST00000113462 6667 ntAPPRIS P4 TSL 1 (best) BASIC21.35■■□□□ 1.01
Ddb1Q3U1J4 Tmem176a-201ENSMUST00000101426 1540 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Ddb1Q3U1J4 Tbx20-202ENSMUST00000166018 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
Ddb1Q3U1J4 Jam2-201ENSMUST00000098407 1998 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
Ddb1Q3U1J4 2610301B20Rik-201ENSMUST00000080517 2116 ntAPPRIS P2 TSL 1 (best) BASIC21.34■■□□□ 1.01
Ddb1Q3U1J4 Hdgfl3-202ENSMUST00000107305 5887 ntAPPRIS P2 TSL 1 (best) BASIC21.34■■□□□ 1.01
Ddb1Q3U1J4 Bmp2k-202ENSMUST00000112974 3244 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
Ddb1Q3U1J4 Znhit1-204ENSMUST00000111091 1070 ntTSL 5 BASIC21.34■■□□□ 1.01
Ddb1Q3U1J4 Gm12480-201ENSMUST00000129576 774 ntTSL 3 BASIC21.34■■□□□ 1.01
Ddb1Q3U1J4 Znhit1-206ENSMUST00000156963 1208 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
Ddb1Q3U1J4 Gm26517-201ENSMUST00000181279 1172 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
Ddb1Q3U1J4 Icam4-202ENSMUST00000215077 1028 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
Ddb1Q3U1J4 AC090659.1-201ENSMUST00000224334 768 ntBASIC21.34■■□□□ 1.01
Ddb1Q3U1J4 Miga1-201ENSMUST00000068243 2689 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
Ddb1Q3U1J4 Orai3-201ENSMUST00000061587 1996 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Ddb1Q3U1J4 AW047730-202ENSMUST00000181406 2579 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
Ddb1Q3U1J4 Hist1h4a-201ENSMUST00000102964 539 ntAPPRIS P1 BASIC21.33■■□□□ 1.01
Ddb1Q3U1J4 E530001F21Rik-201ENSMUST00000120991 730 ntBASIC21.33■■□□□ 1.01
Ddb1Q3U1J4 Gm16194-203ENSMUST00000141239 362 ntTSL 3 BASIC21.33■■□□□ 1.01
Ddb1Q3U1J4 Gm27628-201ENSMUST00000184911 107 ntBASIC21.33■■□□□ 1.01
Ddb1Q3U1J4 1500035N22Rik-201ENSMUST00000075081 865 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
Ddb1Q3U1J4 Gm26608-201ENSMUST00000180740 1954 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
Ddb1Q3U1J4 Gm16712-201ENSMUST00000181962 1960 ntTSL 2 BASIC21.33■■□□□ 1.01
Ddb1Q3U1J4 Vps53-203ENSMUST00000108419 2209 ntTSL 1 (best) BASIC21.33■■□□□ 1
Ddb1Q3U1J4 Rassf1-204ENSMUST00000122225 1783 ntTSL 5 BASIC21.33■■□□□ 1
Ddb1Q3U1J4 Rassf1-202ENSMUST00000093786 1787 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
Ddb1Q3U1J4 Cyb561-201ENSMUST00000019734 2741 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
Ddb1Q3U1J4 Crlf3-201ENSMUST00000061283 2396 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Ddb1Q3U1J4 Pomp-201ENSMUST00000031654 1579 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Ddb1Q3U1J4 Satb1-211ENSMUST00000152830 5993 ntAPPRIS P2 TSL 2 BASIC21.32■■□□□ 1
Ddb1Q3U1J4 Gm19554-201ENSMUST00000220934 2076 ntTSL 1 (best) BASIC21.32■■□□□ 1
Ddb1Q3U1J4 Pgf-204ENSMUST00000223220 2080 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
Ddb1Q3U1J4 Tmed9-201ENSMUST00000109905 1420 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Ddb1Q3U1J4 Xkr6-201ENSMUST00000119973 2963 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Ddb1Q3U1J4 Mef2b-201ENSMUST00000110140 1223 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
Ddb1Q3U1J4 Mef2b-202ENSMUST00000110141 1253 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
Ddb1Q3U1J4 Gm13036-201ENSMUST00000117799 748 ntBASIC21.32■■□□□ 1
Ddb1Q3U1J4 Triqk-201ENSMUST00000143186 888 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Ddb1Q3U1J4 Med11-202ENSMUST00000151013 445 ntTSL 2 BASIC21.32■■□□□ 1
Ddb1Q3U1J4 Rbm14-203ENSMUST00000180008 370 ntTSL 5 BASIC21.32■■□□□ 1
Ddb1Q3U1J4 Gm45683-201ENSMUST00000210825 1247 ntBASIC21.32■■□□□ 1
Ddb1Q3U1J4 Cela3a-201ENSMUST00000024200 958 ntAPPRIS P1 TSL 5 BASIC21.32■■□□□ 1
Ddb1Q3U1J4 Romo1-201ENSMUST00000088610 569 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Ddb1Q3U1J4 Hbb-bt-201ENSMUST00000098192 703 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Ddb1Q3U1J4 Srsf4-202ENSMUST00000053819 2257 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Ddb1Q3U1J4 Fam118a-201ENSMUST00000023069 2543 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Ddb1Q3U1J4 Cdk5r2-201ENSMUST00000160379 2799 ntAPPRIS P1 BASIC21.32■■□□□ 1
Ddb1Q3U1J4 AI115009-201ENSMUST00000181093 1853 ntTSL 1 (best) BASIC21.32■■□□□ 1
Ddb1Q3U1J4 Il10rb-201ENSMUST00000023691 1850 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Ddb1Q3U1J4 Dlg1-205ENSMUST00000115201 3248 ntTSL 5 BASIC21.32■■□□□ 1
Ddb1Q3U1J4 Bhlhe22-201ENSMUST00000026120 3344 ntAPPRIS P1 BASIC21.32■■□□□ 1
Ddb1Q3U1J4 Gfra2-202ENSMUST00000227633 1480 ntBASIC21.32■■□□□ 1
Ddb1Q3U1J4 Ppp2r1b-211ENSMUST00000176798 2074 ntAPPRIS ALT2 TSL 5 BASIC21.32■■□□□ 1
Ddb1Q3U1J4 Mff-208ENSMUST00000160786 1645 ntTSL 1 (best) BASIC21.31■■□□□ 1
Ddb1Q3U1J4 Auts2-212ENSMUST00000178555 309 ntBASIC21.31■■□□□ 1
Ddb1Q3U1J4 Gm45208-202ENSMUST00000208156 1153 ntAPPRIS P1 TSL 5 BASIC21.31■■□□□ 1
Ddb1Q3U1J4 1300002E11Rik-207ENSMUST00000211443 767 ntTSL 5 BASIC21.31■■□□□ 1
Ddb1Q3U1J4 Dnajb8-201ENSMUST00000061866 990 ntAPPRIS P1 BASIC21.31■■□□□ 1
Ddb1Q3U1J4 Pdgfa-202ENSMUST00000076095 2060 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Ddb1Q3U1J4 Pdx1-201ENSMUST00000085591 2158 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Ddb1Q3U1J4 Kmt5b-204ENSMUST00000113970 2975 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
Ddb1Q3U1J4 Phldb3-204ENSMUST00000206422 2564 ntAPPRIS P1 TSL 5 BASIC21.31■■□□□ 1
Ddb1Q3U1J4 Kmt2b-202ENSMUST00000108154 8454 ntAPPRIS P2 TSL 1 (best) BASIC21.31■■□□□ 1
Ddb1Q3U1J4 Vhl-201ENSMUST00000035673 2792 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Ddb1Q3U1J4 Mapk1ip1-203ENSMUST00000119664 1883 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Ddb1Q3U1J4 Isl2-201ENSMUST00000034869 1854 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Ddb1Q3U1J4 Spatc1-201ENSMUST00000074173 1605 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Ddb1Q3U1J4 Donson-201ENSMUST00000023682 2360 ntAPPRIS P2 TSL 1 (best) BASIC21.3■■□□□ 1
Ddb1Q3U1J4 Ubxn2a-201ENSMUST00000020962 2696 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Ddb1Q3U1J4 Wnk2-211ENSMUST00000162581 6628 ntAPPRIS ALT2 TSL 5 BASIC21.3■■□□□ 1
Ddb1Q3U1J4 Crybb1-202ENSMUST00000112375 793 ntAPPRIS P1 TSL 3 BASIC21.3■■□□□ 1
Ddb1Q3U1J4 AC154757.1-201ENSMUST00000228289 336 ntBASIC21.3■■□□□ 1
Ddb1Q3U1J4 Apof-201ENSMUST00000050901 1258 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Ddb1Q3U1J4 Commd5-201ENSMUST00000068407 1037 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Ddb1Q3U1J4 Adam22-205ENSMUST00000115385 2318 ntTSL 2 BASIC21.3■■□□□ 1
Retrieved 100 of 76,532 protein–RNA pairs in 35.3 ms