Protein–RNA interactions for Protein: P97386

Lig3, DNA ligase 3, mousemouse

Predictions only

Length 1,015 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lig3P97386 Ilk-212ENSMUST00000163389 1749 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Lig3P97386 Gapdh-202ENSMUST00000117757 1273 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Lig3P97386 Gm13420-201ENSMUST00000129574 1091 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
Lig3P97386 Pym1-202ENSMUST00000163377 1158 ntAPPRIS P4 TSL 1 (best) BASIC18.3■□□□□ 0.52
Lig3P97386 B230208B08Rik-201ENSMUST00000173049 404 ntTSL 3 BASIC18.3■□□□□ 0.52
Lig3P97386 Shc3-203ENSMUST00000223543 1241 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Lig3P97386 Nfe2l3-201ENSMUST00000005103 2544 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Lig3P97386 Eva1c-201ENSMUST00000037539 1698 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Lig3P97386 Ankrd13b-201ENSMUST00000037593 3105 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Lig3P97386 Sphk1-201ENSMUST00000063396 2659 ntAPPRIS ALT2 TSL 2 BASIC18.3■□□□□ 0.52
Lig3P97386 Ing4-205ENSMUST00000140131 1446 ntAPPRIS ALT1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Lig3P97386 Fam120c-201ENSMUST00000073364 5463 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Lig3P97386 Gbe1-201ENSMUST00000023393 2846 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
Lig3P97386 Plppr4-201ENSMUST00000061071 5696 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Lig3P97386 Dancr-204ENSMUST00000132389 2347 ntBASIC18.29■□□□□ 0.52
Lig3P97386 Slc37a4-203ENSMUST00000213388 2344 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Lig3P97386 Tfap2a-208ENSMUST00000224999 2058 ntAPPRIS ALT1 BASIC18.29■□□□□ 0.52
Lig3P97386 Nrl-202ENSMUST00000111404 2422 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Lig3P97386 Tdg-ps-201ENSMUST00000051363 2968 ntBASIC18.29■□□□□ 0.52
Lig3P97386 Ncmap-205ENSMUST00000105860 2000 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Lig3P97386 Fez2-202ENSMUST00000112487 2020 ntAPPRIS ALT1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Lig3P97386 Ptpn5-201ENSMUST00000033142 3145 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Lig3P97386 Crocc-203ENSMUST00000102491 6582 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Lig3P97386 4930401G09Rik-201ENSMUST00000139500 637 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Lig3P97386 Mrpl43-201ENSMUST00000097715 1213 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Lig3P97386 Nfib-205ENSMUST00000107247 3267 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
Lig3P97386 St8sia1-201ENSMUST00000032421 8991 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Lig3P97386 Hapln2-201ENSMUST00000005014 1711 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Lig3P97386 Odf2-211ENSMUST00000113767 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Lig3P97386 Piezo2-201ENSMUST00000046860 2849 ntTSL 5 BASIC18.28■□□□□ 0.52
Lig3P97386 Casd1-201ENSMUST00000015333 3961 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Lig3P97386 Cdc25a-201ENSMUST00000094324 3632 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Lig3P97386 Cenpa-205ENSMUST00000144742 1466 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Lig3P97386 Egln2-202ENSMUST00000108382 1756 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
Lig3P97386 Bcat2-201ENSMUST00000033098 1772 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Lig3P97386 Kctd8-201ENSMUST00000054095 2859 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
Lig3P97386 Gm14453-201ENSMUST00000139677 553 ntTSL 3 BASIC18.28■□□□□ 0.52
Lig3P97386 Gm17112-201ENSMUST00000163194 432 ntTSL 3 BASIC18.28■□□□□ 0.52
Lig3P97386 Gm3764-202ENSMUST00000180582 440 ntTSL 5 BASIC18.28■□□□□ 0.52
Lig3P97386 2310001K24Rik-202ENSMUST00000186760 740 ntTSL 2 BASIC18.28■□□□□ 0.52
Lig3P97386 Kiss1r-202ENSMUST00000219745 979 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Lig3P97386 Idnk-201ENSMUST00000051490 764 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Lig3P97386 Krtap1-5-201ENSMUST00000054532 1041 ntAPPRIS P1 BASIC18.28■□□□□ 0.52
Lig3P97386 Gm5867-201ENSMUST00000063197 592 ntBASIC18.28■□□□□ 0.52
Lig3P97386 Gnb5-201ENSMUST00000076889 1188 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Lig3P97386 Lonp1-201ENSMUST00000047226 2963 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Lig3P97386 Senp2-201ENSMUST00000023561 4499 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Lig3P97386 Retreg1-201ENSMUST00000022881 3248 ntTSL 5 BASIC18.28■□□□□ 0.52
Lig3P97386 Rhpn2-201ENSMUST00000032705 3508 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Lig3P97386 Fam98a-201ENSMUST00000112507 2817 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Lig3P97386 Tfap2c-201ENSMUST00000030391 2838 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Lig3P97386 Tmem145-202ENSMUST00000119703 1781 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.52
Lig3P97386 Rhobtb2-201ENSMUST00000022665 5322 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Lig3P97386 Krt80-201ENSMUST00000077196 1774 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Lig3P97386 Kdm2a-202ENSMUST00000075856 7242 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.52
Lig3P97386 Fancg-201ENSMUST00000030165 2771 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Lig3P97386 Slc27a4-201ENSMUST00000080065 4054 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Lig3P97386 6430573F11Rik-202ENSMUST00000135373 2573 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
Lig3P97386 Gm20517-202ENSMUST00000132397 4807 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Lig3P97386 Cutc-202ENSMUST00000112047 1233 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Lig3P97386 Gm26620-201ENSMUST00000180542 817 ntAPPRIS P1 BASIC18.27■□□□□ 0.52
Lig3P97386 Gm4217-201ENSMUST00000182243 1002 ntBASIC18.27■□□□□ 0.52
Lig3P97386 Rpl19-ps10-201ENSMUST00000205555 330 ntBASIC18.27■□□□□ 0.52
Lig3P97386 Rab1a-201ENSMUST00000020358 2827 ntAPPRIS ALT1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Lig3P97386 Gm26676-201ENSMUST00000181877 2226 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
Lig3P97386 Anks1b-225ENSMUST00000182966 1625 ntTSL 5 BASIC18.27■□□□□ 0.51
Lig3P97386 Rab27b-202ENSMUST00000117692 2842 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
Lig3P97386 Mdfic-202ENSMUST00000120512 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Lig3P97386 Slit1-201ENSMUST00000025993 5045 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Lig3P97386 Ocel1-202ENSMUST00000110051 2179 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Lig3P97386 Kmt5c-201ENSMUST00000098853 2189 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Lig3P97386 Sap18-202ENSMUST00000111268 662 ntTSL 2 BASIC18.26■□□□□ 0.51
Lig3P97386 Fgf8-205ENSMUST00000111927 843 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
Lig3P97386 Gm9013-201ENSMUST00000132939 882 ntBASIC18.26■□□□□ 0.51
Lig3P97386 Gm28626-201ENSMUST00000187004 520 ntTSL 2 BASIC18.26■□□□□ 0.51
Lig3P97386 Gm29518-201ENSMUST00000190858 372 ntBASIC18.26■□□□□ 0.51
Lig3P97386 Etfb-201ENSMUST00000004729 893 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Lig3P97386 Tfap4-201ENSMUST00000005862 2113 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Lig3P97386 Ubr3-202ENSMUST00000112251 8081 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
Lig3P97386 9930012K11Rik-201ENSMUST00000058240 1986 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
Lig3P97386 Atxn7l2-202ENSMUST00000117409 2321 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
Lig3P97386 Gm37374-201ENSMUST00000194954 1829 ntBASIC18.26■□□□□ 0.51
Lig3P97386 Bcor-206ENSMUST00000124033 6785 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
Lig3P97386 Pgm3-202ENSMUST00000072585 1920 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Lig3P97386 Frmd5-203ENSMUST00000121219 2262 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Lig3P97386 Mapre3-201ENSMUST00000031058 2021 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Lig3P97386 2410002F23Rik-217ENSMUST00000188111 2131 ntAPPRIS P2 TSL 2 BASIC18.25■□□□□ 0.51
Lig3P97386 Gm10532-201ENSMUST00000181913 2301 ntTSL 2 BASIC18.25■□□□□ 0.51
Lig3P97386 Ccdc184-201ENSMUST00000031914 2329 ntAPPRIS P1 BASIC18.25■□□□□ 0.51
Lig3P97386 Nectin2-202ENSMUST00000108450 1955 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
Lig3P97386 Gm13474-201ENSMUST00000122466 815 ntBASIC18.25■□□□□ 0.51
Lig3P97386 Mir2861-201ENSMUST00000175539 82 ntBASIC18.25■□□□□ 0.51
Lig3P97386 Gm27389-201ENSMUST00000183622 195 ntBASIC18.25■□□□□ 0.51
Lig3P97386 Krt10-202ENSMUST00000211768 557 ntTSL 3 BASIC18.25■□□□□ 0.51
Lig3P97386 Gm21559-201ENSMUST00000220638 855 ntBASIC18.25■□□□□ 0.51
Lig3P97386 Gm8587-201ENSMUST00000076538 843 ntBASIC18.25■□□□□ 0.51
Lig3P97386 Tfdp2-209ENSMUST00000188750 1713 ntAPPRIS ALT2 TSL 5 BASIC18.25■□□□□ 0.51
Lig3P97386 Lhx8-205ENSMUST00000205251 1729 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
Lig3P97386 Gpr137-201ENSMUST00000025909 1717 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Lig3P97386 Nfatc3-201ENSMUST00000109308 5984 ntAPPRIS P2 TSL 1 (best) BASIC18.25■□□□□ 0.51
Retrieved 100 of 76,532 protein–RNA pairs in 23.3 ms