Protein–RNA interactions for Protein: P48381

Rfx3, Transcription factor RFX3, mousemouse

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx3P48381 Rpl36al-202ENSMUST00000110619 1276 ntAPPRIS P1 BASIC15.21■□□□□ 0.03
Rfx3P48381 Serf1-204ENSMUST00000151821 570 ntTSL 2 BASIC15.21■□□□□ 0.03
Rfx3P48381 Snx12-204ENSMUST00000156473 1114 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Rfx3P48381 Gm28914-201ENSMUST00000188115 667 ntTSL 2 BASIC15.21■□□□□ 0.03
Rfx3P48381 Gm34933-201ENSMUST00000203245 1067 ntTSL 5 BASIC15.21■□□□□ 0.03
Rfx3P48381 Rpl18a-206ENSMUST00000212709 700 ntTSL 2 BASIC15.21■□□□□ 0.03
Rfx3P48381 Mrpl10-202ENSMUST00000054252 744 ntTSL 5 BASIC15.21■□□□□ 0.03
Rfx3P48381 Pusl1-201ENSMUST00000097737 1243 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
Rfx3P48381 Matr3-214ENSMUST00000190029 2845 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
Rfx3P48381 Pprc1-203ENSMUST00000111899 5246 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.03
Rfx3P48381 Ern1-204ENSMUST00000106801 1957 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Rfx3P48381 Neu1-201ENSMUST00000007253 2474 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
Rfx3P48381 Ikbke-204ENSMUST00000161764 2867 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
Rfx3P48381 Mef2d-203ENSMUST00000107559 1791 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
Rfx3P48381 Lrig2-207ENSMUST00000199070 5991 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
Rfx3P48381 Plekha4-202ENSMUST00000209517 2577 ntAPPRIS P2 TSL 5 BASIC15.21■□□□□ 0.02
Rfx3P48381 Agps-201ENSMUST00000047232 7359 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Rfx3P48381 Epha10-201ENSMUST00000059343 2544 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Rfx3P48381 Pcdh1-203ENSMUST00000160721 5416 ntTSL 5 BASIC15.2■□□□□ 0.02
Rfx3P48381 Adam22-201ENSMUST00000046838 2773 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
Rfx3P48381 Hbs1l-203ENSMUST00000092674 2625 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Rfx3P48381 Capg-202ENSMUST00000114071 1400 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Rfx3P48381 Ina-201ENSMUST00000037636 3240 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Rfx3P48381 Rexo1-201ENSMUST00000057910 5250 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Rfx3P48381 Zfp219-212ENSMUST00000228580 2812 ntAPPRIS ALT2 BASIC15.2■□□□□ 0.02
Rfx3P48381 D330023K18Rik-201ENSMUST00000133550 920 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Rfx3P48381 Gm10517-202ENSMUST00000192970 758 ntBASIC15.2■□□□□ 0.02
Rfx3P48381 Mfap2-201ENSMUST00000071977 1073 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Rfx3P48381 Ppp2r5e-201ENSMUST00000021447 4810 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Rfx3P48381 Snrnp48-201ENSMUST00000091641 1785 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Rfx3P48381 Usp32-202ENSMUST00000108075 7053 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
Rfx3P48381 Gm8839-201ENSMUST00000121279 1645 ntBASIC15.2■□□□□ 0.02
Rfx3P48381 Bmt2-202ENSMUST00000203078 4462 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Rfx3P48381 Ilk-212ENSMUST00000163389 1749 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Rfx3P48381 Uts2r-201ENSMUST00000039044 1703 ntAPPRIS P1 BASIC15.2■□□□□ 0.02
Rfx3P48381 Siglecf-202ENSMUST00000121494 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
Rfx3P48381 Dsg2-201ENSMUST00000059787 5766 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Rfx3P48381 Git2-215ENSMUST00000178440 4944 ntTSL 5 BASIC15.19■□□□□ 0.02
Rfx3P48381 Git2-201ENSMUST00000043283 4938 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Rfx3P48381 Tsc22d2-203ENSMUST00000199164 4659 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
Rfx3P48381 Gm21974-201ENSMUST00000126662 2037 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
Rfx3P48381 Dnajb14-201ENSMUST00000090178 9477 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Rfx3P48381 AC069562.2-201ENSMUST00000224644 2146 ntBASIC15.19■□□□□ 0.02
Rfx3P48381 Stk39-201ENSMUST00000102715 3536 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Rfx3P48381 Jade2-202ENSMUST00000109090 6230 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
Rfx3P48381 Arntl-203ENSMUST00000210074 2554 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Rfx3P48381 Krt9-201ENSMUST00000059707 2580 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Rfx3P48381 Rhot1-201ENSMUST00000017831 3029 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Rfx3P48381 Gm16201-202ENSMUST00000139218 2330 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Rfx3P48381 Unc50-203ENSMUST00000118059 1179 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
Rfx3P48381 Zfp629-207ENSMUST00000134446 670 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Rfx3P48381 Gm10653-202ENSMUST00000139570 835 ntBASIC15.19■□□□□ 0.02
Rfx3P48381 Mrpl13-205ENSMUST00000172387 1223 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Rfx3P48381 Opn4-202ENSMUST00000168444 2075 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
Rfx3P48381 Mboat7-201ENSMUST00000038608 2878 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Rfx3P48381 Trhde-201ENSMUST00000061632 5714 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Rfx3P48381 Kcmf1-201ENSMUST00000068697 3251 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Rfx3P48381 Evpl-201ENSMUST00000037007 6384 ntAPPRIS P1 TSL 2 BASIC15.19■□□□□ 0.02
Rfx3P48381 Slc25a31-201ENSMUST00000091184 2128 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Rfx3P48381 Med18-201ENSMUST00000102567 1675 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Rfx3P48381 Eif4g3-205ENSMUST00000105831 6235 ntAPPRIS ALT2 TSL 5 BASIC15.19■□□□□ 0.02
Rfx3P48381 Lrriq4-203ENSMUST00000172350 1797 ntAPPRIS P3 TSL 5 BASIC15.19■□□□□ 0.02
Rfx3P48381 Tra2a-204ENSMUST00000204189 1777 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
Rfx3P48381 Tia1-203ENSMUST00000095754 1789 ntAPPRIS ALT1 TSL 5 BASIC15.19■□□□□ 0.02
Rfx3P48381 Nox4-202ENSMUST00000068829 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
Rfx3P48381 Negr1-203ENSMUST00000106065 1953 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
Rfx3P48381 Dcps-202ENSMUST00000119847 1445 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
Rfx3P48381 Pdcl3-201ENSMUST00000027247 3914 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Rfx3P48381 Glt28d2-201ENSMUST00000033643 2732 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Rfx3P48381 Gprc5c-203ENSMUST00000122967 1709 ntTSL 5 BASIC15.18■□□□□ 0.02
Rfx3P48381 Cask-201ENSMUST00000033321 4057 ntTSL 5 BASIC15.18■□□□□ 0.02
Rfx3P48381 Wdr41-203ENSMUST00000160115 2851 ntTSL 5 BASIC15.18■□□□□ 0.02
Rfx3P48381 Zfp560-202ENSMUST00000143992 608 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
Rfx3P48381 Prss16-204ENSMUST00000150547 1159 ntTSL 3 BASIC15.18■□□□□ 0.02
Rfx3P48381 Gm9694-201ENSMUST00000193347 1189 ntBASIC15.18■□□□□ 0.02
Rfx3P48381 Stmn1-201ENSMUST00000030636 1060 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Rfx3P48381 Gm11273-201ENSMUST00000044043 390 ntAPPRIS P1 BASIC15.18■□□□□ 0.02
Rfx3P48381 Fmnl2-202ENSMUST00000050719 3380 ntTSL 5 BASIC15.18■□□□□ 0.02
Rfx3P48381 Carmil2-201ENSMUST00000062574 2526 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
Rfx3P48381 Chka-202ENSMUST00000072055 2549 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
Rfx3P48381 Gabra5-202ENSMUST00000206382 2607 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
Rfx3P48381 Tgfb2-201ENSMUST00000045288 5116 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Rfx3P48381 Aldh2-202ENSMUST00000129753 1799 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
Rfx3P48381 Pde8b-214ENSMUST00000172104 2493 ntAPPRIS ALT2 TSL 5 BASIC15.18■□□□□ 0.02
Rfx3P48381 St8sia6-201ENSMUST00000003509 7618 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Rfx3P48381 Baz1b-201ENSMUST00000002825 6492 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Rfx3P48381 C030014I23Rik-201ENSMUST00000080911 1810 ntBASIC15.17■□□□□ 0.02
Rfx3P48381 Sfrp2-201ENSMUST00000029625 2003 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Rfx3P48381 Inpp5f-201ENSMUST00000043138 4734 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Rfx3P48381 Adcy7-203ENSMUST00000169037 5198 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Rfx3P48381 Uso1-201ENSMUST00000031355 3898 ntAPPRIS P2 TSL 1 (best) BASIC15.17■□□□□ 0.02
Rfx3P48381 Inpp5e-202ENSMUST00000114090 2790 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
Rfx3P48381 Foxq1-201ENSMUST00000042118 4843 ntAPPRIS P1 BASIC15.17■□□□□ 0.02
Rfx3P48381 2900072N19Rik-201ENSMUST00000123840 806 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Rfx3P48381 Gm22240-201ENSMUST00000175225 82 ntBASIC15.17■□□□□ 0.02
Rfx3P48381 Nudt22-203ENSMUST00000180765 1073 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
Rfx3P48381 Gm44899-201ENSMUST00000207451 391 ntTSL 3 BASIC15.17■□□□□ 0.02
Rfx3P48381 Cklf-203ENSMUST00000211809 525 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
Rfx3P48381 Vps37d-202ENSMUST00000076203 1286 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Rfx3P48381 Mapk7-201ENSMUST00000079080 3019 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Retrieved 100 of 76,532 protein–RNA pairs in 34.5 ms