Protein–RNA interactions for Protein: P39428

Traf1, TNF receptor-associated factor 1, mousemouse

Predictions only

Length 409 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Traf1P39428 Fam171a2-201ENSMUST00000049057 3118 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Traf1P39428 Cyr61-201ENSMUST00000029846 2019 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Traf1P39428 A930017K11Rik-201ENSMUST00000162431 2539 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Traf1P39428 Auh-202ENSMUST00000110031 3235 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Traf1P39428 Zfp865-203ENSMUST00000085427 2751 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Traf1P39428 Hsf4-202ENSMUST00000163734 1630 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Traf1P39428 Mpped2-202ENSMUST00000111063 2848 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Traf1P39428 Zdhhc6-207ENSMUST00000224897 2168 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
Traf1P39428 Zdhhc6-209ENSMUST00000225495 1711 ntBASIC19.43■□□□□ 0.7
Traf1P39428 Aifm1-201ENSMUST00000037349 2237 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
Traf1P39428 Zcchc4-203ENSMUST00000113904 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
Traf1P39428 Stxbp5-209ENSMUST00000141722 4702 ntAPPRIS P2 TSL 5 BASIC19.43■□□□□ 0.7
Traf1P39428 Capn1-202ENSMUST00000164843 3048 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
Traf1P39428 Sh3gl2-203ENSMUST00000107188 2286 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Traf1P39428 Lman2l-202ENSMUST00000115011 2290 ntTSL 5 BASIC19.43■□□□□ 0.7
Traf1P39428 Urah-202ENSMUST00000106050 719 ntAPPRIS ALT2 TSL 2 BASIC19.43■□□□□ 0.7
Traf1P39428 Sirt7-202ENSMUST00000106183 427 ntTSL 3 BASIC19.43■□□□□ 0.7
Traf1P39428 Snx15-207ENSMUST00000154601 767 ntTSL 5 BASIC19.43■□□□□ 0.7
Traf1P39428 Flg-207ENSMUST00000180293 768 ntAPPRIS ALT2 BASIC19.43■□□□□ 0.7
Traf1P39428 Piga-208ENSMUST00000208697 947 ntTSL 5 BASIC19.43■□□□□ 0.7
Traf1P39428 Gm45631-201ENSMUST00000210318 1244 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Traf1P39428 Fam213b-201ENSMUST00000030935 883 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Traf1P39428 Rpp25l-201ENSMUST00000038434 856 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Traf1P39428 BC049762-201ENSMUST00000054226 760 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Traf1P39428 Prima1-201ENSMUST00000074416 909 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Traf1P39428 Nt5dc3-201ENSMUST00000099396 5952 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Traf1P39428 Gm14029-201ENSMUST00000151051 1348 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Traf1P39428 Uhrf2-201ENSMUST00000025739 3536 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Traf1P39428 Tenm3-204ENSMUST00000110346 2267 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Traf1P39428 Etnk2-203ENSMUST00000135222 2297 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.7
Traf1P39428 Zxdc-203ENSMUST00000113539 4864 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
Traf1P39428 Cspg5-202ENSMUST00000196060 3790 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Traf1P39428 Ncam2-202ENSMUST00000067602 3563 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
Traf1P39428 9330160F10Rik-201ENSMUST00000101007 2766 ntBASIC19.42■□□□□ 0.7
Traf1P39428 Map4k4-202ENSMUST00000168431 5632 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
Traf1P39428 Adsl-204ENSMUST00000164806 1595 ntTSL 5 BASIC19.42■□□□□ 0.7
Traf1P39428 Mir770-201ENSMUST00000103252 94 ntBASIC19.42■□□□□ 0.7
Traf1P39428 Srpx-202ENSMUST00000115543 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
Traf1P39428 Ube2t-201ENSMUST00000027687 1116 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Traf1P39428 Pgm3-202ENSMUST00000072585 1920 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Traf1P39428 Dnlz-201ENSMUST00000028295 2916 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Traf1P39428 Il17rb-202ENSMUST00000122205 2094 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
Traf1P39428 L3hypdh-201ENSMUST00000019862 1831 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Traf1P39428 Platr31-201ENSMUST00000180653 1466 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Traf1P39428 Prdm6-201ENSMUST00000091900 2601 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
Traf1P39428 Idh1-201ENSMUST00000097709 2302 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Traf1P39428 Zrsr2-202ENSMUST00000112289 2735 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
Traf1P39428 Arhgef17-204ENSMUST00000209041 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
Traf1P39428 Gtf2h4-201ENSMUST00000001565 1679 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Traf1P39428 Gm16295-201ENSMUST00000139512 643 ntTSL 3 BASIC19.41■□□□□ 0.7
Traf1P39428 Alkbh2-201ENSMUST00000053657 1073 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Traf1P39428 Otud5-201ENSMUST00000033494 4259 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
Traf1P39428 Cldn4-201ENSMUST00000051401 1816 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
Traf1P39428 Bend4-204ENSMUST00000201972 8268 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
Traf1P39428 Zbtb5-204ENSMUST00000180217 4708 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
Traf1P39428 Map7-201ENSMUST00000020173 4252 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
Traf1P39428 Gm26627-201ENSMUST00000181540 1487 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Traf1P39428 Dut-201ENSMUST00000051605 1950 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Traf1P39428 Sh3bp1-201ENSMUST00000001226 2510 ntTSL 5 BASIC19.41■□□□□ 0.7
Traf1P39428 6430573F11Rik-202ENSMUST00000135373 2573 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Traf1P39428 Shroom3-211ENSMUST00000225438 5742 ntBASIC19.4■□□□□ 0.7
Traf1P39428 Eri1-201ENSMUST00000033927 5079 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Traf1P39428 Mapkapk3-201ENSMUST00000035194 2816 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Traf1P39428 Gm26592-201ENSMUST00000180870 1730 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Traf1P39428 Itgb1bp1-201ENSMUST00000076260 1874 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Traf1P39428 Rps27a-202ENSMUST00000102845 791 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Traf1P39428 Gm19935-201ENSMUST00000209208 979 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Traf1P39428 AC159205.3-201ENSMUST00000224614 874 ntBASIC19.4■□□□□ 0.7
Traf1P39428 Gzme-201ENSMUST00000089549 916 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Traf1P39428 Smim3-201ENSMUST00000042710 1984 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Traf1P39428 Magix-201ENSMUST00000115695 1342 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Traf1P39428 Sncaip-205ENSMUST00000178011 3433 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
Traf1P39428 Ankrd63-201ENSMUST00000104937 4861 ntAPPRIS P1 BASIC19.4■□□□□ 0.7
Traf1P39428 Tbcb-201ENSMUST00000006254 1416 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Traf1P39428 Cldn6-201ENSMUST00000024699 1506 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Traf1P39428 Dap-201ENSMUST00000044524 1555 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Traf1P39428 Farsa-202ENSMUST00000109754 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC19.39■□□□□ 0.7
Traf1P39428 Krt12-201ENSMUST00000017741 1852 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
Traf1P39428 Sfrp2-201ENSMUST00000029625 2003 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Traf1P39428 Epn1-201ENSMUST00000045277 2334 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.69
Traf1P39428 Fam53a-201ENSMUST00000045329 2346 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.69
Traf1P39428 Gm13186-201ENSMUST00000118031 316 ntBASIC19.39■□□□□ 0.69
Traf1P39428 Ighv6-1-201ENSMUST00000193612 343 ntBASIC19.39■□□□□ 0.69
Traf1P39428 4933412L11Rik-201ENSMUST00000203702 1044 ntBASIC19.39■□□□□ 0.69
Traf1P39428 Insl6-201ENSMUST00000052380 708 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Traf1P39428 Hist1h2ai-201ENSMUST00000070124 393 ntAPPRIS P1 BASIC19.39■□□□□ 0.69
Traf1P39428 Hist1h2an-201ENSMUST00000091751 393 ntAPPRIS P1 BASIC19.39■□□□□ 0.69
Traf1P39428 Chpt1-201ENSMUST00000020253 3898 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.69
Traf1P39428 Dcps-202ENSMUST00000119847 1445 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Traf1P39428 Trim54-202ENSMUST00000202769 1408 ntAPPRIS ALT1 TSL 5 BASIC19.39■□□□□ 0.69
Traf1P39428 Sfrp4-201ENSMUST00000002883 1764 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Traf1P39428 Ptpre-201ENSMUST00000073961 5410 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.69
Traf1P39428 Acvrl1-203ENSMUST00000119063 1818 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Traf1P39428 Gm43808-201ENSMUST00000202534 2065 ntBASIC19.39■□□□□ 0.69
Traf1P39428 Zc3h14-203ENSMUST00000110104 3146 ntTSL 5 BASIC19.38■□□□□ 0.69
Traf1P39428 Scube2-202ENSMUST00000106728 2890 ntAPPRIS ALT2 TSL 5 BASIC19.38■□□□□ 0.69
Traf1P39428 Tmsb10-202ENSMUST00000114049 690 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Traf1P39428 Gm11336-201ENSMUST00000118168 334 ntBASIC19.38■□□□□ 0.69
Traf1P39428 Gm20422-202ENSMUST00000149782 956 ntTSL 2 BASIC19.38■□□□□ 0.69
Traf1P39428 Gm37519-201ENSMUST00000191687 2210 ntBASIC19.38■□□□□ 0.69
Retrieved 100 of 76,532 protein–RNA pairs in 28.7 ms