Protein–RNA interactions for Protein: P28481

Col2a1, Collagen alpha-1(II) chain, mousemouse

Predictions only

Length 1,487 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col2a1P28481 Gm13830-205ENSMUST00000201195 1155 ntBASIC19.04■□□□□ 0.64
Col2a1P28481 AC114585.2-202ENSMUST00000228094 426 ntBASIC19.04■□□□□ 0.64
Col2a1P28481 Fcnb-201ENSMUST00000028179 1170 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Col2a1P28481 Gm32996-201ENSMUST00000199828 1447 ntBASIC19.04■□□□□ 0.64
Col2a1P28481 Perp-201ENSMUST00000019998 1952 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Col2a1P28481 Ahcyl1-201ENSMUST00000029490 3863 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Col2a1P28481 Smpdl3b-201ENSMUST00000030709 2006 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Col2a1P28481 Msmo1-201ENSMUST00000034015 2044 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Col2a1P28481 Grk2-202ENSMUST00000088737 3376 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Col2a1P28481 Coq6-201ENSMUST00000021661 1602 ntAPPRIS P2 TSL 1 (best) BASIC19.04■□□□□ 0.64
Col2a1P28481 Arpc1a-201ENSMUST00000031625 1632 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Col2a1P28481 Ddx41-201ENSMUST00000021956 2205 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Col2a1P28481 Sdf4-203ENSMUST00000105578 1654 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Col2a1P28481 Ccl27a-202ENSMUST00000108032 350 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
Col2a1P28481 4933405L10Rik-201ENSMUST00000013302 1214 ntAPPRIS P2 TSL 1 (best) BASIC19.03■□□□□ 0.64
Col2a1P28481 Rhox13-201ENSMUST00000152730 876 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Col2a1P28481 Gm44357-201ENSMUST00000195897 142 ntBASIC19.03■□□□□ 0.64
Col2a1P28481 Gm19658-201ENSMUST00000196231 138 ntBASIC19.03■□□□□ 0.64
Col2a1P28481 Gm44367-201ENSMUST00000196836 138 ntBASIC19.03■□□□□ 0.64
Col2a1P28481 Gm44350-201ENSMUST00000197197 138 ntBASIC19.03■□□□□ 0.64
Col2a1P28481 Gm44390-201ENSMUST00000197533 144 ntBASIC19.03■□□□□ 0.64
Col2a1P28481 Gm44313-201ENSMUST00000198018 138 ntBASIC19.03■□□□□ 0.64
Col2a1P28481 Gm44486-201ENSMUST00000198508 138 ntBASIC19.03■□□□□ 0.64
Col2a1P28481 Gm44314-201ENSMUST00000199263 138 ntBASIC19.03■□□□□ 0.64
Col2a1P28481 Gm44394-201ENSMUST00000199558 138 ntBASIC19.03■□□□□ 0.64
Col2a1P28481 Gm44484-201ENSMUST00000199873 138 ntBASIC19.03■□□□□ 0.64
Col2a1P28481 Gm44466-201ENSMUST00000200264 138 ntBASIC19.03■□□□□ 0.64
Col2a1P28481 Gm44359-201ENSMUST00000200671 138 ntBASIC19.03■□□□□ 0.64
Col2a1P28481 Zfp524-203ENSMUST00000209030 1128 ntAPPRIS P1 TSL 5 BASIC19.03■□□□□ 0.64
Col2a1P28481 Icam4-202ENSMUST00000215077 1028 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
Col2a1P28481 Ptprcap-201ENSMUST00000061086 927 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Col2a1P28481 Dupd1-201ENSMUST00000073870 1138 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Col2a1P28481 Dohh-201ENSMUST00000072751 1444 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Col2a1P28481 Rasgef1b-205ENSMUST00000161148 2430 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
Col2a1P28481 Wdr13-202ENSMUST00000115623 1749 ntAPPRIS P1 TSL 5 BASIC19.03■□□□□ 0.64
Col2a1P28481 Zcchc2-201ENSMUST00000118196 5796 ntAPPRIS P4 TSL 5 BASIC19.03■□□□□ 0.64
Col2a1P28481 Kif27-203ENSMUST00000225388 5121 ntAPPRIS P1 BASIC19.03■□□□□ 0.64
Col2a1P28481 Dlg1-205ENSMUST00000115201 3248 ntTSL 5 BASIC19.03■□□□□ 0.64
Col2a1P28481 Kcnn1-207ENSMUST00000212509 1608 ntAPPRIS ALT2 TSL 5 BASIC19.03■□□□□ 0.64
Col2a1P28481 Elac2-202ENSMUST00000101049 2884 ntAPPRIS ALT2 TSL 5 BASIC19.03■□□□□ 0.64
Col2a1P28481 Arpc1b-211ENSMUST00000196111 1394 ntAPPRIS ALT1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Col2a1P28481 Krt81-201ENSMUST00000061185 1857 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Col2a1P28481 1700020A23Rik-202ENSMUST00000110281 521 ntAPPRIS P1 TSL 3 BASIC19.03■□□□□ 0.64
Col2a1P28481 Gm8349-201ENSMUST00000182720 1003 ntBASIC19.03■□□□□ 0.64
Col2a1P28481 Gm7507-201ENSMUST00000183053 1008 ntBASIC19.03■□□□□ 0.64
Col2a1P28481 Gm44264-201ENSMUST00000203049 742 ntTSL 3 BASIC19.03■□□□□ 0.64
Col2a1P28481 Gm33054-201ENSMUST00000216588 313 ntTSL 5 BASIC19.03■□□□□ 0.64
Col2a1P28481 Klhdc10-202ENSMUST00000068259 5901 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Col2a1P28481 Spsb4-201ENSMUST00000055433 2720 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Col2a1P28481 Arnt2-201ENSMUST00000085077 6151 ntAPPRIS P2 TSL 1 (best) BASIC19.02■□□□□ 0.64
Col2a1P28481 Ahsa1-201ENSMUST00000021425 1377 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Col2a1P28481 Mag-201ENSMUST00000040548 2419 ntAPPRIS P2 TSL 1 (best) BASIC19.02■□□□□ 0.64
Col2a1P28481 Pkd2-201ENSMUST00000086831 5219 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Col2a1P28481 Adck1-204ENSMUST00000222695 2253 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Col2a1P28481 Rpl19-ps10-201ENSMUST00000205555 330 ntBASIC19.02■□□□□ 0.63
Col2a1P28481 Gm44771-201ENSMUST00000206975 626 ntBASIC19.02■□□□□ 0.63
Col2a1P28481 Cmtm5-203ENSMUST00000227441 610 ntBASIC19.02■□□□□ 0.63
Col2a1P28481 Wipf1-202ENSMUST00000102679 2039 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
Col2a1P28481 Ggnbp1-201ENSMUST00000053683 1525 ntAPPRIS P3 TSL 1 (best) BASIC19.01■□□□□ 0.63
Col2a1P28481 Ift74-202ENSMUST00000107104 1713 ntTSL 2 BASIC19.01■□□□□ 0.63
Col2a1P28481 Sufu-202ENSMUST00000111867 1747 ntAPPRIS ALT1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Col2a1P28481 Osbpl1a-205ENSMUST00000119512 1947 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
Col2a1P28481 Nxn-201ENSMUST00000021204 2755 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Col2a1P28481 Neurl4-213ENSMUST00000177476 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
Col2a1P28481 2810039B14Rik-201ENSMUST00000183928 1459 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
Col2a1P28481 Tnnt1-203ENSMUST00000108587 1059 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
Col2a1P28481 Nfs1-202ENSMUST00000109600 709 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
Col2a1P28481 Gm7616-201ENSMUST00000143112 624 ntTSL 3 BASIC19.01■□□□□ 0.63
Col2a1P28481 4930458A03Rik-201ENSMUST00000198197 961 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
Col2a1P28481 Ammecr1-201ENSMUST00000041317 5437 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Col2a1P28481 Cog2-201ENSMUST00000034460 2825 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Col2a1P28481 Ankra2-201ENSMUST00000022164 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Col2a1P28481 Hist1h1c-201ENSMUST00000040914 1560 ntAPPRIS P1 BASIC19.01■□□□□ 0.63
Col2a1P28481 Shisa7-203ENSMUST00000119433 3481 ntAPPRIS P2 TSL 1 (best) BASIC19■□□□□ 0.63
Col2a1P28481 Col23a1-201ENSMUST00000102765 5658 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
Col2a1P28481 Pou2f2-206ENSMUST00000108418 1934 ntTSL 1 (best) BASIC19■□□□□ 0.63
Col2a1P28481 Nrbp1-207ENSMUST00000202576 2221 ntTSL 1 (best) BASIC19■□□□□ 0.63
Col2a1P28481 Nrbp1-201ENSMUST00000031034 2203 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Col2a1P28481 Acot1-201ENSMUST00000168120 2272 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Col2a1P28481 Gm10300-201ENSMUST00000094662 2296 ntAPPRIS P1 BASIC19■□□□□ 0.63
Col2a1P28481 Oip5-202ENSMUST00000123818 1082 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Col2a1P28481 Hrh3-204ENSMUST00000165248 1224 ntAPPRIS ALT2 TSL 5 BASIC19■□□□□ 0.63
Col2a1P28481 Dgcr6-202ENSMUST00000076757 894 ntTSL 5 BASIC19■□□□□ 0.63
Col2a1P28481 Htr3a-201ENSMUST00000003826 2082 ntAPPRIS P2 TSL 1 (best) BASIC19■□□□□ 0.63
Col2a1P28481 Igsf9b-201ENSMUST00000115247 2857 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
Col2a1P28481 Cyp26b1-203ENSMUST00000204109 1340 ntTSL 5 BASIC19■□□□□ 0.63
Col2a1P28481 Wdr45-201ENSMUST00000043045 1609 ntAPPRIS P2 TSL 1 (best) BASIC19■□□□□ 0.63
Col2a1P28481 Atp5b-201ENSMUST00000026459 1916 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Col2a1P28481 Slc46a1-201ENSMUST00000001126 1978 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Col2a1P28481 Timm29-201ENSMUST00000062125 3170 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Col2a1P28481 Astn2-202ENSMUST00000084496 4675 ntAPPRIS ALT2 TSL 5 BASIC18.99■□□□□ 0.63
Col2a1P28481 B3gat2-203ENSMUST00000144602 1488 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
Col2a1P28481 Mex3d-201ENSMUST00000105350 3266 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Col2a1P28481 Rnf26-201ENSMUST00000056328 2724 ntAPPRIS P2 BASIC18.99■□□□□ 0.63
Col2a1P28481 Insm1-201ENSMUST00000089257 3100 ntAPPRIS P1 BASIC18.99■□□□□ 0.63
Col2a1P28481 Cfap206-201ENSMUST00000029971 2246 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
Col2a1P28481 Bex1-203ENSMUST00000113120 718 ntAPPRIS P1 TSL 3 BASIC18.99■□□□□ 0.63
Col2a1P28481 Prr3-202ENSMUST00000165613 767 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
Col2a1P28481 Entpd4-205ENSMUST00000184314 989 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
Col2a1P28481 Gm5864-201ENSMUST00000202263 970 ntBASIC18.99■□□□□ 0.63
Retrieved 100 of 76,532 protein–RNA pairs in 24.9 ms