Protein–RNA interactions for Protein: P15379

Cd44, CD44 antigen, mousemouse

Predictions only

Length 778 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cd44P15379 Usb1-201ENSMUST00000034245 1758 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Cd44P15379 Phax-201ENSMUST00000008445 1942 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
Cd44P15379 Trmt2a-203ENSMUST00000115640 2367 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
Cd44P15379 Tmem127-201ENSMUST00000035871 4811 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Cd44P15379 Ubap1-202ENSMUST00000108060 2514 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Cd44P15379 Dnajb5-201ENSMUST00000037872 3291 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
Cd44P15379 Tmem170-201ENSMUST00000034431 3878 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Cd44P15379 3110082J24Rik-201ENSMUST00000127749 327 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
Cd44P15379 Gm37025-201ENSMUST00000195159 829 ntBASIC17.68■□□□□ 0.42
Cd44P15379 Gm42738-201ENSMUST00000201813 439 ntTSL 3 BASIC17.68■□□□□ 0.42
Cd44P15379 Golga5-201ENSMUST00000021609 3390 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Cd44P15379 Tmem205-201ENSMUST00000046831 785 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Cd44P15379 1700028I16Rik-201ENSMUST00000076984 1048 ntTSL 5 BASIC17.68■□□□□ 0.42
Cd44P15379 Nudt16-201ENSMUST00000035179 1631 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Cd44P15379 Ggnbp2-203ENSMUST00000108081 3034 ntAPPRIS P2 TSL 5 BASIC17.68■□□□□ 0.42
Cd44P15379 Eif1-201ENSMUST00000049385 1322 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Cd44P15379 Cdca7-201ENSMUST00000102691 2424 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Cd44P15379 Sh2b1-201ENSMUST00000032978 3393 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
Cd44P15379 Ttc39b-202ENSMUST00000048274 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
Cd44P15379 Tnfrsf25-201ENSMUST00000025706 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Cd44P15379 AC122335.2-201ENSMUST00000213901 6181 ntBASIC17.67■□□□□ 0.42
Cd44P15379 Sctr-201ENSMUST00000072886 2012 ntAPPRIS P3 TSL 2 BASIC17.67■□□□□ 0.42
Cd44P15379 Hnrnpl-202ENSMUST00000172529 1898 ntTSL 5 BASIC17.67■□□□□ 0.42
Cd44P15379 Mrpl49-201ENSMUST00000007482 1722 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Cd44P15379 Fbxl3-206ENSMUST00000145693 3352 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Cd44P15379 Zswim1-201ENSMUST00000017908 2705 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Cd44P15379 Gm26891-201ENSMUST00000181644 2599 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Cd44P15379 Taf5l-201ENSMUST00000093039 2912 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Cd44P15379 Aurka-202ENSMUST00000109139 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Cd44P15379 Aurka-201ENSMUST00000028997 1905 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
Cd44P15379 Pagr1a-202ENSMUST00000200948 1430 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Cd44P15379 Gm42742-205ENSMUST00000202798 1412 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Cd44P15379 Nisch-221ENSMUST00000171735 1763 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Cd44P15379 Rpl36al-202ENSMUST00000110619 1276 ntAPPRIS P1 BASIC17.67■□□□□ 0.42
Cd44P15379 Gm5643-201ENSMUST00000117081 966 ntBASIC17.67■□□□□ 0.42
Cd44P15379 Gm26829-201ENSMUST00000180581 934 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Cd44P15379 Hoxb2-201ENSMUST00000100523 1628 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Cd44P15379 Gnb3-201ENSMUST00000024206 1846 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Cd44P15379 Rps6kb2-201ENSMUST00000025749 1864 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Cd44P15379 Atxn7l3-201ENSMUST00000073234 3688 ntAPPRIS ALT1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Cd44P15379 Pdgfa-202ENSMUST00000076095 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Cd44P15379 Ntn1-201ENSMUST00000021284 5738 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
Cd44P15379 AC124581.1-201ENSMUST00000225416 1399 ntBASIC17.66■□□□□ 0.42
Cd44P15379 Xrcc1-205ENSMUST00000205573 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Cd44P15379 Lrig3-201ENSMUST00000074807 4016 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Cd44P15379 Tmem260-209ENSMUST00000226422 6333 ntAPPRIS ALT2 BASIC17.66■□□□□ 0.42
Cd44P15379 Ctsh-201ENSMUST00000034915 1617 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Cd44P15379 Gm8189-202ENSMUST00000211035 2039 ntTSL 5 BASIC17.66■□□□□ 0.42
Cd44P15379 Speg-203ENSMUST00000113588 1078 ntTSL 5 BASIC17.66■□□□□ 0.42
Cd44P15379 2310001K24Rik-202ENSMUST00000186760 740 ntTSL 2 BASIC17.66■□□□□ 0.42
Cd44P15379 Gm44878-201ENSMUST00000205812 1295 ntBASIC17.66■□□□□ 0.42
Cd44P15379 Klc1-202ENSMUST00000118471 2272 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Cd44P15379 Chn1-209ENSMUST00000166199 3876 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Cd44P15379 Prss33-201ENSMUST00000059906 1360 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Cd44P15379 Mmp23-201ENSMUST00000030937 1434 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Cd44P15379 Rgl3-201ENSMUST00000045726 2543 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Cd44P15379 Myef2-201ENSMUST00000067780 2999 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
Cd44P15379 Gm26663-201ENSMUST00000181105 1882 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Cd44P15379 Gm11532-201ENSMUST00000128111 5272 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Cd44P15379 Tnfaip2-202ENSMUST00000109792 3284 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Cd44P15379 Tm9sf2-203ENSMUST00000171318 1494 ntTSL 5 BASIC17.65■□□□□ 0.42
Cd44P15379 4930426L09Rik-201ENSMUST00000028069 1459 ntAPPRIS P1 BASIC17.65■□□□□ 0.42
Cd44P15379 Pick1-202ENSMUST00000053926 2415 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Cd44P15379 Gm12085-201ENSMUST00000119263 940 ntBASIC17.65■□□□□ 0.42
Cd44P15379 Arl6ip4-202ENSMUST00000122394 982 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
Cd44P15379 Gm16105-201ENSMUST00000156926 697 ntTSL 3 BASIC17.65■□□□□ 0.42
Cd44P15379 Uqcr11-201ENSMUST00000020372 445 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Cd44P15379 Hif3a-201ENSMUST00000037762 2206 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
Cd44P15379 Slc1a6-201ENSMUST00000005490 2029 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Cd44P15379 Pip4k2a-201ENSMUST00000006912 3477 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Cd44P15379 Btbd1-201ENSMUST00000026093 3001 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Cd44P15379 Slbp-203ENSMUST00000101354 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Cd44P15379 Lpin2-213ENSMUST00000156570 1586 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Cd44P15379 Wnt10b-204ENSMUST00000226655 1807 ntBASIC17.65■□□□□ 0.42
Cd44P15379 Acap3-201ENSMUST00000079031 4301 ntTSL 5 BASIC17.65■□□□□ 0.42
Cd44P15379 Cdk19-201ENSMUST00000044672 5807 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Cd44P15379 Krt6b-201ENSMUST00000023786 2226 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
Cd44P15379 Pias4-201ENSMUST00000005064 2571 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Cd44P15379 Trim44-201ENSMUST00000102573 5612 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Cd44P15379 Ppm1h-206ENSMUST00000161487 2931 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Cd44P15379 Dctn3-201ENSMUST00000030158 973 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Cd44P15379 Taf6l-212ENSMUST00000177216 2167 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
Cd44P15379 Ckap4-201ENSMUST00000053871 3089 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Cd44P15379 Gm16861-201ENSMUST00000181498 1647 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Cd44P15379 Wasf3-201ENSMUST00000016143 5196 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Cd44P15379 Arpc5-201ENSMUST00000077755 1914 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Cd44P15379 Perp-201ENSMUST00000019998 1952 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Cd44P15379 Cisd2-202ENSMUST00000120988 1363 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Cd44P15379 Pkp2-202ENSMUST00000161342 2931 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Cd44P15379 Hnrnpa1-202ENSMUST00000087351 1759 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Cd44P15379 Snx9-201ENSMUST00000002436 2411 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Cd44P15379 Ctsd-202ENSMUST00000151120 2127 ntAPPRIS P2 TSL 1 (best) BASIC17.63■□□□□ 0.41
Cd44P15379 Dnajb2-208ENSMUST00000188346 1823 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Cd44P15379 3110002H16Rik-201ENSMUST00000025276 2170 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Cd44P15379 Fam72a-201ENSMUST00000068613 2191 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Cd44P15379 Usp27x-201ENSMUST00000115744 3240 ntAPPRIS P1 BASIC17.63■□□□□ 0.41
Cd44P15379 Pfkfb4-201ENSMUST00000051873 3316 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Cd44P15379 Mapk8ip3-221ENSMUST00000178969 5579 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
Cd44P15379 Rbmxl1-202ENSMUST00000211719 1622 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Cd44P15379 Echdc2-204ENSMUST00000116309 1238 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Retrieved 100 of 76,532 protein–RNA pairs in 45.7 ms