Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Fam105a-203ENSMUST00000226170 3043 ntBASIC19.66■□□□□ 0.74
Col1a1P11087 Lrp5-202ENSMUST00000176867 2759 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Col1a1P11087 Gm10518-201ENSMUST00000097454 1301 ntAPPRIS P1 BASIC19.66■□□□□ 0.74
Col1a1P11087 9930012K11Rik-205ENSMUST00000153871 1983 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
Col1a1P11087 9930012K11Rik-201ENSMUST00000058240 1986 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
Col1a1P11087 Papd7-202ENSMUST00000198607 4750 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
Col1a1P11087 Sec24b-201ENSMUST00000001079 5128 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Col1a1P11087 Zcchc11-201ENSMUST00000043368 6054 ntAPPRIS P2 TSL 5 BASIC19.65■□□□□ 0.74
Col1a1P11087 Cyb5d2-201ENSMUST00000079681 2393 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Col1a1P11087 Lhfp-201ENSMUST00000059562 2108 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Col1a1P11087 Prss8-201ENSMUST00000032988 1852 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Col1a1P11087 Odf2-211ENSMUST00000113767 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
Col1a1P11087 Ppp2r1b-206ENSMUST00000175645 1931 ntAPPRIS ALT2 TSL 5 BASIC19.65■□□□□ 0.74
Col1a1P11087 Kcns1-201ENSMUST00000045196 2712 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Col1a1P11087 Ccl27a-202ENSMUST00000108032 350 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Col1a1P11087 Cnbp-202ENSMUST00000113617 952 ntTSL 5 BASIC19.65■□□□□ 0.74
Col1a1P11087 Egfl8-201ENSMUST00000015611 1150 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
Col1a1P11087 CT943659.1-201ENSMUST00000215459 326 ntBASIC19.65■□□□□ 0.74
Col1a1P11087 6030408B16Rik-201ENSMUST00000071328 1155 ntAPPRIS ALT2 TSL 5 BASIC19.65■□□□□ 0.74
Col1a1P11087 Egfl8-202ENSMUST00000097345 1064 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
Col1a1P11087 Gm21974-201ENSMUST00000126662 2037 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
Col1a1P11087 Smim15-205ENSMUST00000225972 2097 ntAPPRIS P1 BASIC19.65■□□□□ 0.74
Col1a1P11087 Rrbp1-202ENSMUST00000037875 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.74
Col1a1P11087 Rprd1b-207ENSMUST00000152452 1910 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
Col1a1P11087 Pitx2-207ENSMUST00000174661 1942 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.74
Col1a1P11087 Gm15442-201ENSMUST00000117905 1527 ntBASIC19.64■□□□□ 0.74
Col1a1P11087 Hist1h1c-201ENSMUST00000040914 1560 ntAPPRIS P1 BASIC19.64■□□□□ 0.73
Col1a1P11087 B3gnt2-202ENSMUST00000062844 3057 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Col1a1P11087 Tada2b-201ENSMUST00000031097 3791 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
Col1a1P11087 Gm15173-201ENSMUST00000122049 433 ntBASIC19.64■□□□□ 0.73
Col1a1P11087 Rps13-ps1-201ENSMUST00000183478 538 ntBASIC19.64■□□□□ 0.73
Col1a1P11087 Mrgpra9-201ENSMUST00000098436 1049 ntAPPRIS ALT2 TSL 5 BASIC19.64■□□□□ 0.73
Col1a1P11087 Socs6-203ENSMUST00000125362 2814 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Col1a1P11087 Cnih1-201ENSMUST00000015903 1538 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Col1a1P11087 Diras1-201ENSMUST00000055125 2953 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Col1a1P11087 Fam3a-206ENSMUST00000114143 1899 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Col1a1P11087 Izumo1r-203ENSMUST00000117620 1095 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
Col1a1P11087 Chmp2a-201ENSMUST00000005711 949 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Col1a1P11087 Zcchc14-201ENSMUST00000046386 7444 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Col1a1P11087 Haghl-201ENSMUST00000077938 1405 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Col1a1P11087 Nxn-201ENSMUST00000021204 2755 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Col1a1P11087 Gja4-201ENSMUST00000053753 1685 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Col1a1P11087 Fzd2-201ENSMUST00000057893 3663 ntAPPRIS P1 BASIC19.63■□□□□ 0.73
Col1a1P11087 Ccdc126-201ENSMUST00000055559 2351 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Col1a1P11087 Dmtn-207ENSMUST00000228001 2437 ntBASIC19.62■□□□□ 0.73
Col1a1P11087 Aig1-202ENSMUST00000105534 617 ntTSL 5 BASIC19.62■□□□□ 0.73
Col1a1P11087 Gm14140-201ENSMUST00000119999 995 ntBASIC19.62■□□□□ 0.73
Col1a1P11087 Gm4189-202ENSMUST00000174167 367 ntTSL 3 BASIC19.62■□□□□ 0.73
Col1a1P11087 Gm26768-201ENSMUST00000181097 966 ntTSL 5 BASIC19.62■□□□□ 0.73
Col1a1P11087 Entpd4-205ENSMUST00000184314 989 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
Col1a1P11087 Gm43575-201ENSMUST00000196420 516 ntBASIC19.62■□□□□ 0.73
Col1a1P11087 AV026068-213ENSMUST00000223675 1171 ntBASIC19.62■□□□□ 0.73
Col1a1P11087 Tmem52-201ENSMUST00000023920 932 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
Col1a1P11087 Fahd2a-201ENSMUST00000028848 1211 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Col1a1P11087 2010003K11Rik-201ENSMUST00000048482 1165 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Col1a1P11087 Apof-201ENSMUST00000050901 1258 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Col1a1P11087 Entpd4b-201ENSMUST00000064846 989 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
Col1a1P11087 Gm8909-203ENSMUST00000173353 1428 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
Col1a1P11087 Taz-202ENSMUST00000114180 1786 ntAPPRIS ALT1 TSL 5 BASIC19.62■□□□□ 0.73
Col1a1P11087 Sh3yl1-201ENSMUST00000020997 1750 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
Col1a1P11087 Apba3-201ENSMUST00000057798 2106 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Col1a1P11087 2610301B20Rik-201ENSMUST00000080517 2116 ntAPPRIS P2 TSL 1 (best) BASIC19.62■□□□□ 0.73
Col1a1P11087 1700018L02Rik-201ENSMUST00000187897 2485 ntBASIC19.62■□□□□ 0.73
Col1a1P11087 Tmem136-202ENSMUST00000213544 2463 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Col1a1P11087 Dnaaf5-203ENSMUST00000196441 2426 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
Col1a1P11087 Vps53-203ENSMUST00000108419 2209 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
Col1a1P11087 Lysmd4-209ENSMUST00000208998 2110 ntAPPRIS P2 TSL 1 (best) BASIC19.62■□□□□ 0.73
Col1a1P11087 Smpd5-202ENSMUST00000163991 1823 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Col1a1P11087 Otx2-204ENSMUST00000122009 1737 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Col1a1P11087 Cdk9-202ENSMUST00000120105 1565 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
Col1a1P11087 Rtn1-201ENSMUST00000021497 1544 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Col1a1P11087 Gm2694-204ENSMUST00000181898 1303 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
Col1a1P11087 Mef2b-201ENSMUST00000110140 1223 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
Col1a1P11087 Mef2b-202ENSMUST00000110141 1253 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
Col1a1P11087 Crybb1-202ENSMUST00000112375 793 ntAPPRIS P1 TSL 3 BASIC19.61■□□□□ 0.73
Col1a1P11087 Gm12497-201ENSMUST00000138778 237 ntBASIC19.61■□□□□ 0.73
Col1a1P11087 Dbi-207ENSMUST00000151708 491 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
Col1a1P11087 Gm44264-201ENSMUST00000203049 742 ntTSL 3 BASIC19.61■□□□□ 0.73
Col1a1P11087 Cyba-202ENSMUST00000212600 638 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
Col1a1P11087 Nr2f1-201ENSMUST00000091458 3207 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Col1a1P11087 Gls2-201ENSMUST00000044776 2573 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Col1a1P11087 Foxo3-204ENSMUST00000175881 2535 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Col1a1P11087 Zmym3-204ENSMUST00000118092 1502 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
Col1a1P11087 Gm15408-201ENSMUST00000124198 1379 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
Col1a1P11087 Rab3a-201ENSMUST00000034301 1363 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Col1a1P11087 Dhx32-203ENSMUST00000106139 2233 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
Col1a1P11087 Tmsb4x-202ENSMUST00000112175 864 ntTSL 2 BASIC19.6■□□□□ 0.73
Col1a1P11087 Qdpr-204ENSMUST00000120867 1234 ntTSL 5 BASIC19.6■□□□□ 0.73
Col1a1P11087 Ptpa-208ENSMUST00000131476 989 ntTSL 2 BASIC19.6■□□□□ 0.73
Col1a1P11087 Tmem141-205ENSMUST00000142087 795 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Col1a1P11087 1700023H06Rik-201ENSMUST00000161006 1044 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
Col1a1P11087 Coa3-201ENSMUST00000017332 886 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Col1a1P11087 1190007I07Rik-202ENSMUST00000176200 586 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
Col1a1P11087 Hsd3b2-203ENSMUST00000177651 1122 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
Col1a1P11087 1190007I07Rik-203ENSMUST00000183363 406 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Col1a1P11087 Gm43935-201ENSMUST00000203569 1050 ntBASIC19.6■□□□□ 0.73
Col1a1P11087 Il17re-208ENSMUST00000204774 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
Col1a1P11087 AC114585.2-202ENSMUST00000228094 426 ntBASIC19.6■□□□□ 0.73
Col1a1P11087 Lce3b-201ENSMUST00000046234 562 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Col1a1P11087 1190007I07Rik-201ENSMUST00000079648 716 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Retrieved 100 of 76,532 protein–RNA pairs in 29.4 ms