Protein–RNA interactions for Protein: P0C0A3

Chmp6, Charged multivesicular body protein 6, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp6P0C0A3 Gm14114-201ENSMUST00000139345 287 ntTSL 3 BASIC18.32■□□□□ 0.52
Chmp6P0C0A3 Ddah2-204ENSMUST00000174493 1254 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Chmp6P0C0A3 Comtd1-204ENSMUST00000177527 714 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
Chmp6P0C0A3 Gm45618-201ENSMUST00000209890 660 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
Chmp6P0C0A3 Limd2-202ENSMUST00000064545 798 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
Chmp6P0C0A3 Psmd4-201ENSMUST00000071664 1276 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Chmp6P0C0A3 6330411D24Rik-201ENSMUST00000211105 1568 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Chmp6P0C0A3 Mn1-201ENSMUST00000094463 6860 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
Chmp6P0C0A3 Zdhhc6-207ENSMUST00000224897 2168 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
Chmp6P0C0A3 Trim7-201ENSMUST00000046903 2161 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
Chmp6P0C0A3 Ifrd2-201ENSMUST00000010192 2056 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Chmp6P0C0A3 1810041L15Rik-203ENSMUST00000189248 5296 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Chmp6P0C0A3 Prdm6-201ENSMUST00000091900 2601 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Chmp6P0C0A3 Fam109a-203ENSMUST00000198271 2335 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Chmp6P0C0A3 Fam53a-201ENSMUST00000045329 2346 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Chmp6P0C0A3 Sharpin-201ENSMUST00000023211 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Chmp6P0C0A3 Agbl4-205ENSMUST00000106591 1406 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Chmp6P0C0A3 Arhgef11-201ENSMUST00000039476 6776 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Chmp6P0C0A3 Taok3-203ENSMUST00000111978 4467 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Chmp6P0C0A3 Pex5-202ENSMUST00000080557 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Chmp6P0C0A3 Gm3488-202ENSMUST00000181562 1945 ntAPPRIS P5 TSL 5 BASIC18.31■□□□□ 0.52
Chmp6P0C0A3 Rala-201ENSMUST00000009003 2688 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Chmp6P0C0A3 Tbx3os2-201ENSMUST00000135385 1345 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Chmp6P0C0A3 Ppp1r1b-204ENSMUST00000137634 1343 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Chmp6P0C0A3 Bean1-201ENSMUST00000093245 3199 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
Chmp6P0C0A3 Gm14968-201ENSMUST00000155528 769 ntTSL 3 BASIC18.31■□□□□ 0.52
Chmp6P0C0A3 1700025A08Rik-201ENSMUST00000200753 609 ntBASIC18.31■□□□□ 0.52
Chmp6P0C0A3 Nsg1-204ENSMUST00000201363 820 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
Chmp6P0C0A3 AC122465.1-201ENSMUST00000220813 1209 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Chmp6P0C0A3 Fitm1-201ENSMUST00000022826 971 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Chmp6P0C0A3 BC048679-201ENSMUST00000073406 522 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
Chmp6P0C0A3 Dhx32-201ENSMUST00000033290 2955 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Chmp6P0C0A3 Lhx6-208ENSMUST00000148852 1481 ntTSL 5 BASIC18.31■□□□□ 0.52
Chmp6P0C0A3 Nbea-201ENSMUST00000029374 10986 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
Chmp6P0C0A3 Zc3h14-203ENSMUST00000110104 3146 ntTSL 5 BASIC18.31■□□□□ 0.52
Chmp6P0C0A3 Clcn2-202ENSMUST00000120099 2812 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
Chmp6P0C0A3 Homez-202ENSMUST00000142283 4713 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Chmp6P0C0A3 Vamp4-203ENSMUST00000132158 2752 ntTSL 3 BASIC18.3■□□□□ 0.52
Chmp6P0C0A3 Rps5-202ENSMUST00000108539 794 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
Chmp6P0C0A3 Snrnp48-202ENSMUST00000178564 847 ntTSL 5 BASIC18.3■□□□□ 0.52
Chmp6P0C0A3 Gm7889-201ENSMUST00000185591 958 ntBASIC18.3■□□□□ 0.52
Chmp6P0C0A3 Gm9987-201ENSMUST00000069768 567 ntBASIC18.3■□□□□ 0.52
Chmp6P0C0A3 Pde5a-204ENSMUST00000200389 7603 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
Chmp6P0C0A3 Abhd11-206ENSMUST00000154469 1473 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Chmp6P0C0A3 Tmem175-204ENSMUST00000146207 1686 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Chmp6P0C0A3 Znrf1-201ENSMUST00000095176 3108 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Chmp6P0C0A3 Il17rb-202ENSMUST00000122205 2094 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
Chmp6P0C0A3 Cnksr2-201ENSMUST00000026750 5738 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Chmp6P0C0A3 Dleu2-208ENSMUST00000182768 1442 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Chmp6P0C0A3 Gnas-222ENSMUST00000180362 1645 ntTSL 5 BASIC18.3■□□□□ 0.52
Chmp6P0C0A3 Sept8-203ENSMUST00000120878 1806 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
Chmp6P0C0A3 Zfp142-201ENSMUST00000027315 6480 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Chmp6P0C0A3 Zfp668-203ENSMUST00000106262 3169 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Chmp6P0C0A3 Lonp1-201ENSMUST00000047226 2963 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Chmp6P0C0A3 Mtfr1l-202ENSMUST00000116279 1969 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Chmp6P0C0A3 Prrt4-201ENSMUST00000159200 3411 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Chmp6P0C0A3 Dhx32-203ENSMUST00000106139 2233 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Chmp6P0C0A3 St3gal3-203ENSMUST00000106410 2225 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Chmp6P0C0A3 Actr3-202ENSMUST00000178474 2565 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Chmp6P0C0A3 Tnnt2-202ENSMUST00000112085 1076 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
Chmp6P0C0A3 Tnnt2-203ENSMUST00000112086 1094 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
Chmp6P0C0A3 Tnnt2-204ENSMUST00000112087 1112 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
Chmp6P0C0A3 Gm11973-203ENSMUST00000155498 867 ntTSL 3 BASIC18.29■□□□□ 0.52
Chmp6P0C0A3 Tnnt2-206ENSMUST00000178854 1076 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
Chmp6P0C0A3 Tnnt2-211ENSMUST00000189355 1112 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
Chmp6P0C0A3 Tnnt2-212ENSMUST00000189732 1123 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
Chmp6P0C0A3 Ripply2-201ENSMUST00000058846 503 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Chmp6P0C0A3 Fgfr1-214ENSMUST00000178276 4741 ntTSL 5 BASIC18.29■□□□□ 0.52
Chmp6P0C0A3 Fxyd6-201ENSMUST00000085939 1788 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Chmp6P0C0A3 Gm16759-201ENSMUST00000126238 1393 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Chmp6P0C0A3 Sfrp2-201ENSMUST00000029625 2003 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Chmp6P0C0A3 Krt13-201ENSMUST00000007275 1654 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Chmp6P0C0A3 Cacfd1-205ENSMUST00000114007 2689 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Chmp6P0C0A3 Dhfr-201ENSMUST00000022218 5347 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Chmp6P0C0A3 Chn1-203ENSMUST00000112024 4050 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Chmp6P0C0A3 Chn1-210ENSMUST00000180045 4050 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Chmp6P0C0A3 Fam129c-208ENSMUST00000143662 2267 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
Chmp6P0C0A3 Hmbox1-203ENSMUST00000175744 1771 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Chmp6P0C0A3 Mfsd10-202ENSMUST00000114329 1906 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Chmp6P0C0A3 Ablim1-204ENSMUST00000111524 1251 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Chmp6P0C0A3 Olfr464-201ENSMUST00000074874 1084 ntAPPRIS P1 BASIC18.28■□□□□ 0.52
Chmp6P0C0A3 Gm8994-201ENSMUST00000077886 1236 ntAPPRIS P1 BASIC18.28■□□□□ 0.52
Chmp6P0C0A3 Crebl2-201ENSMUST00000046303 3629 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Chmp6P0C0A3 Pomp-201ENSMUST00000031654 1579 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Chmp6P0C0A3 Plac9a-201ENSMUST00000052286 1555 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Chmp6P0C0A3 Piezo2-201ENSMUST00000046860 2849 ntTSL 5 BASIC18.28■□□□□ 0.52
Chmp6P0C0A3 Yipf2-204ENSMUST00000213809 1883 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Chmp6P0C0A3 Dtx2-204ENSMUST00000111145 2493 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
Chmp6P0C0A3 Slc26a10-205ENSMUST00000222911 3067 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
Chmp6P0C0A3 Znfx1-201ENSMUST00000048988 7218 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Chmp6P0C0A3 Psmd6-201ENSMUST00000022256 1387 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Chmp6P0C0A3 Adcy5-201ENSMUST00000114913 7007 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Chmp6P0C0A3 D730003I15Rik-202ENSMUST00000194375 1667 ntBASIC18.28■□□□□ 0.52
Chmp6P0C0A3 Ptpa-202ENSMUST00000113601 1838 ntTSL 5 BASIC18.28■□□□□ 0.52
Chmp6P0C0A3 Col17a1-201ENSMUST00000026045 5588 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
Chmp6P0C0A3 Urgcp-206ENSMUST00000170116 5528 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.52
Chmp6P0C0A3 Dnajc3-201ENSMUST00000022734 5141 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Chmp6P0C0A3 Zmynd15-203ENSMUST00000108563 2649 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
Chmp6P0C0A3 Fam57b-201ENSMUST00000079423 2328 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Chmp6P0C0A3 Kcna6-204ENSMUST00000185333 5836 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Retrieved 100 of 76,532 protein–RNA pairs in 22.6 ms