Protein–RNA interactions for Protein: B1AR17

Chd3, Chromodomain helicase DNA-binding protein 3, mousemouse

Predictions only

Length 2,055 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd3B1AR17 Fam171a1-204ENSMUST00000115099 4149 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
Chd3B1AR17 Mroh5-201ENSMUST00000071419 2766 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
Chd3B1AR17 Ocel1-201ENSMUST00000002469 1611 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Chd3B1AR17 Rab11b-203ENSMUST00000173860 1544 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Chd3B1AR17 Map7-201ENSMUST00000020173 4252 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
Chd3B1AR17 Dvl3-204ENSMUST00000171774 2319 ntTSL 5 BASIC16.44■□□□□ 0.22
Chd3B1AR17 Ager-201ENSMUST00000015596 1370 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
Chd3B1AR17 Zufsp-202ENSMUST00000218055 2180 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Chd3B1AR17 Bvht-202ENSMUST00000183087 588 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Chd3B1AR17 Thrsp-201ENSMUST00000043077 1277 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Chd3B1AR17 Gzme-201ENSMUST00000089549 916 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Chd3B1AR17 Srrm2-209ENSMUST00000190686 8864 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
Chd3B1AR17 Map3k10-201ENSMUST00000036453 3682 ntAPPRIS P2 TSL 1 (best) BASIC16.44■□□□□ 0.22
Chd3B1AR17 Gm16638-201ENSMUST00000148687 1865 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Chd3B1AR17 Kank3-201ENSMUST00000048560 2641 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Chd3B1AR17 Kansl1-204ENSMUST00000106972 5427 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
Chd3B1AR17 Paqr4-201ENSMUST00000024702 2507 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Chd3B1AR17 Cacna1a-201ENSMUST00000121390 7926 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
Chd3B1AR17 Asph-204ENSMUST00000084915 2884 ntTSL 5 BASIC16.44■□□□□ 0.22
Chd3B1AR17 AU022751-202ENSMUST00000117544 2201 ntAPPRIS P4 BASIC16.44■□□□□ 0.22
Chd3B1AR17 Npas3-203ENSMUST00000223057 2724 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
Chd3B1AR17 Bptf-201ENSMUST00000057892 11488 ntAPPRIS P2 TSL 5 BASIC16.44■□□□□ 0.22
Chd3B1AR17 Lrrc43-202ENSMUST00000121444 2016 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
Chd3B1AR17 Smpdl3b-201ENSMUST00000030709 2006 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Chd3B1AR17 H2-DMb1-201ENSMUST00000114232 1404 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Chd3B1AR17 Gm43294-201ENSMUST00000202850 2490 ntBASIC16.44■□□□□ 0.22
Chd3B1AR17 Plpbp-202ENSMUST00000098851 1368 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Chd3B1AR17 Ppp1r2-202ENSMUST00000115233 958 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Chd3B1AR17 Hikeshi-207ENSMUST00000207309 835 ntTSL 5 BASIC16.44■□□□□ 0.22
Chd3B1AR17 Atg101-201ENSMUST00000048393 1230 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Chd3B1AR17 Ankrd22-201ENSMUST00000025686 1766 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Chd3B1AR17 Atp2a2-201ENSMUST00000031423 4486 ntAPPRIS P4 TSL 1 (best) BASIC16.43■□□□□ 0.22
Chd3B1AR17 Tmx1-201ENSMUST00000021471 2795 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Chd3B1AR17 Armc10-202ENSMUST00000095495 2700 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
Chd3B1AR17 Uri1-201ENSMUST00000085513 3441 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Chd3B1AR17 Psen2-205ENSMUST00000111108 1997 ntAPPRIS P2 TSL 1 (best) BASIC16.43■□□□□ 0.22
Chd3B1AR17 Wnk2-202ENSMUST00000049265 6738 ntAPPRIS ALT2 TSL 5 BASIC16.43■□□□□ 0.22
Chd3B1AR17 Ewsr1-203ENSMUST00000079949 2588 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
Chd3B1AR17 Kcnn2-208ENSMUST00000211323 2046 ntAPPRIS P2 TSL 1 (best) BASIC16.43■□□□□ 0.22
Chd3B1AR17 Zkscan6-202ENSMUST00000071465 2270 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Chd3B1AR17 Rbbp7-203ENSMUST00000112327 1862 ntTSL 5 BASIC16.42■□□□□ 0.22
Chd3B1AR17 Nrxn1-217ENSMUST00000174337 3021 ntTSL 5 BASIC16.42■□□□□ 0.22
Chd3B1AR17 C130032M10Rik-201ENSMUST00000180393 728 ntAPPRIS P1 BASIC16.42■□□□□ 0.22
Chd3B1AR17 Gm38119-201ENSMUST00000192027 755 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
Chd3B1AR17 Tgfb1i1-205ENSMUST00000165667 1812 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Chd3B1AR17 Snap91-201ENSMUST00000036347 4237 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
Chd3B1AR17 Mdm1-204ENSMUST00000169817 2022 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
Chd3B1AR17 Otub1-202ENSMUST00000123594 1728 ntTSL 5 BASIC16.42■□□□□ 0.22
Chd3B1AR17 Cap1-202ENSMUST00000106255 2737 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Chd3B1AR17 Tmem241-205ENSMUST00000209859 1426 ntAPPRIS P4 TSL 1 (best) BASIC16.42■□□□□ 0.22
Chd3B1AR17 Dohh-201ENSMUST00000072751 1444 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Chd3B1AR17 Apbb1-205ENSMUST00000187057 1630 ntTSL 5 BASIC16.42■□□□□ 0.22
Chd3B1AR17 Gm16835-201ENSMUST00000140488 2809 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Chd3B1AR17 Stk39-201ENSMUST00000102715 3536 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Chd3B1AR17 Ppp2ca-201ENSMUST00000020608 7102 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Chd3B1AR17 Uso1-204ENSMUST00000202155 3707 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
Chd3B1AR17 Usp49-201ENSMUST00000024779 8252 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Chd3B1AR17 Yif1b-203ENSMUST00000108238 1126 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
Chd3B1AR17 Gm10052-201ENSMUST00000168019 960 ntBASIC16.42■□□□□ 0.22
Chd3B1AR17 Gm27357-201ENSMUST00000183754 135 ntBASIC16.42■□□□□ 0.22
Chd3B1AR17 Gm7729-201ENSMUST00000050143 801 ntBASIC16.42■□□□□ 0.22
Chd3B1AR17 Mrpl49-201ENSMUST00000007482 1722 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Chd3B1AR17 Paqr9-201ENSMUST00000079597 8367 ntAPPRIS P1 BASIC16.42■□□□□ 0.22
Chd3B1AR17 Smad1-202ENSMUST00000066091 3099 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Chd3B1AR17 Cend1-201ENSMUST00000084436 1672 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
Chd3B1AR17 Ruvbl2-201ENSMUST00000107771 1834 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Chd3B1AR17 Ghrhr-201ENSMUST00000063578 1550 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Chd3B1AR17 Zfp746-201ENSMUST00000073124 3651 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
Chd3B1AR17 Slc39a1-201ENSMUST00000015467 2364 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Chd3B1AR17 Dtx2-201ENSMUST00000005072 2562 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
Chd3B1AR17 Rpl13a-204ENSMUST00000209711 495 ntTSL 3 BASIC16.41■□□□□ 0.22
Chd3B1AR17 Gm18669-201ENSMUST00000216049 778 ntBASIC16.41■□□□□ 0.22
Chd3B1AR17 Tmem270-201ENSMUST00000047305 932 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Chd3B1AR17 Gm43338-201ENSMUST00000198617 2223 ntBASIC16.41■□□□□ 0.22
Chd3B1AR17 Msmo1-201ENSMUST00000034015 2044 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Chd3B1AR17 Zfyve19-201ENSMUST00000090174 2008 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Chd3B1AR17 Tmem164-201ENSMUST00000087333 5149 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Chd3B1AR17 Pdxdc1-202ENSMUST00000115802 2466 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Chd3B1AR17 Rab1a-201ENSMUST00000020358 2827 ntAPPRIS ALT1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Chd3B1AR17 Fbxo33-201ENSMUST00000043204 3688 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Chd3B1AR17 Pacs2-202ENSMUST00000220541 3101 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Chd3B1AR17 Lrch2-201ENSMUST00000112819 4892 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
Chd3B1AR17 Anks1b-219ENSMUST00000182600 1697 ntTSL 5 BASIC16.41■□□□□ 0.22
Chd3B1AR17 D730003I15Rik-202ENSMUST00000194375 1667 ntBASIC16.41■□□□□ 0.22
Chd3B1AR17 Gnaz-201ENSMUST00000037813 3519 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Chd3B1AR17 Cd82-204ENSMUST00000111257 1003 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
Chd3B1AR17 Pgam1-ps2-201ENSMUST00000117129 765 ntBASIC16.41■□□□□ 0.22
Chd3B1AR17 Gm15952-201ENSMUST00000122858 490 ntTSL 3 BASIC16.41■□□□□ 0.22
Chd3B1AR17 Celrr-203ENSMUST00000185678 937 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Chd3B1AR17 Sf1-202ENSMUST00000113487 2649 ntAPPRIS ALT1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Chd3B1AR17 Plppr2-201ENSMUST00000046371 2626 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Chd3B1AR17 Gck-202ENSMUST00000109822 1786 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Chd3B1AR17 Fam181a-203ENSMUST00000191218 1419 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
Chd3B1AR17 Gm26858-201ENSMUST00000180608 2040 ntTSL 5 BASIC16.4■□□□□ 0.22
Chd3B1AR17 Lcmt2-201ENSMUST00000099486 2047 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Chd3B1AR17 Taf4b-201ENSMUST00000169862 5149 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
Chd3B1AR17 Tenm3-204ENSMUST00000110346 2267 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Chd3B1AR17 Cldn7-201ENSMUST00000018713 1335 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Chd3B1AR17 Dok5-201ENSMUST00000029075 1768 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Chd3B1AR17 Gm26887-201ENSMUST00000181282 547 ntTSL 5 BASIC16.4■□□□□ 0.22
Retrieved 100 of 76,532 protein–RNA pairs in 20.9 ms