Protein–RNA interactions for Protein: A2ASI5

Scn3a, Sodium channel protein, mousemouse

Predictions only

Length 1,947 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn3aA2ASI5 Gbe1-206ENSMUST00000170464 2736 ntAPPRIS ALT2 TSL 5 BASIC18.74■□□□□ 0.59
Scn3aA2ASI5 Lrrc36-206ENSMUST00000216765 2301 ntAPPRIS ALT2 TSL 5 BASIC18.74■□□□□ 0.59
Scn3aA2ASI5 Msmo1-201ENSMUST00000034015 2044 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Scn3aA2ASI5 Elac2-202ENSMUST00000101049 2884 ntAPPRIS ALT2 TSL 5 BASIC18.74■□□□□ 0.59
Scn3aA2ASI5 Atp9a-203ENSMUST00000109176 3691 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Scn3aA2ASI5 Mmp24-201ENSMUST00000029141 4306 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Scn3aA2ASI5 Haghl-201ENSMUST00000077938 1405 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Scn3aA2ASI5 Ubtf-204ENSMUST00000107117 3258 ntAPPRIS ALT2 TSL 5 BASIC18.74■□□□□ 0.59
Scn3aA2ASI5 Scml4-203ENSMUST00000105495 1033 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Scn3aA2ASI5 Gm13830-201ENSMUST00000124378 417 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Scn3aA2ASI5 CT009713.7-201ENSMUST00000224689 571 ntBASIC18.74■□□□□ 0.59
Scn3aA2ASI5 Cmtm5-203ENSMUST00000227441 610 ntBASIC18.74■□□□□ 0.59
Scn3aA2ASI5 Ammecr1-201ENSMUST00000041317 5437 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Scn3aA2ASI5 Pih1d1-202ENSMUST00000107811 1072 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Scn3aA2ASI5 1700020A23Rik-202ENSMUST00000110281 521 ntAPPRIS P1 TSL 3 BASIC18.73■□□□□ 0.59
Scn3aA2ASI5 Cgrrf1-204ENSMUST00000140114 419 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Scn3aA2ASI5 Vamp8-201ENSMUST00000059983 820 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Scn3aA2ASI5 Dtnb-222ENSMUST00000174479 3689 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Scn3aA2ASI5 Coq6-201ENSMUST00000021661 1602 ntAPPRIS P2 TSL 1 (best) BASIC18.73■□□□□ 0.59
Scn3aA2ASI5 Perp-201ENSMUST00000019998 1952 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Scn3aA2ASI5 Mlxip-202ENSMUST00000111596 2653 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Scn3aA2ASI5 Sdf4-203ENSMUST00000105578 1654 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Scn3aA2ASI5 Btn1a1-202ENSMUST00000110434 1077 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Scn3aA2ASI5 Uba52-203ENSMUST00000125184 711 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Scn3aA2ASI5 Nudt14-203ENSMUST00000221497 355 ntTSL 2 BASIC18.72■□□□□ 0.59
Scn3aA2ASI5 Ank1-201ENSMUST00000033947 1030 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Scn3aA2ASI5 Capzb-202ENSMUST00000042675 1604 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Scn3aA2ASI5 Frmd5-203ENSMUST00000121219 2262 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Scn3aA2ASI5 Ext2-212ENSMUST00000184931 2629 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Scn3aA2ASI5 Hist1h1c-201ENSMUST00000040914 1560 ntAPPRIS P1 BASIC18.72■□□□□ 0.59
Scn3aA2ASI5 Fezf1-201ENSMUST00000031709 2409 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Scn3aA2ASI5 Coro1a-201ENSMUST00000032949 1660 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Scn3aA2ASI5 Astn2-202ENSMUST00000084496 4675 ntAPPRIS ALT2 TSL 5 BASIC18.72■□□□□ 0.59
Scn3aA2ASI5 Cfap206-201ENSMUST00000029971 2246 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
Scn3aA2ASI5 Gm12216-201ENSMUST00000117316 1152 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
Scn3aA2ASI5 Gm12536-201ENSMUST00000129102 358 ntTSL 2 BASIC18.72■□□□□ 0.59
Scn3aA2ASI5 2210408F21Rik-212ENSMUST00000152157 490 ntTSL 2 BASIC18.72■□□□□ 0.59
Scn3aA2ASI5 9530052E02Rik-201ENSMUST00000180750 949 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Scn3aA2ASI5 Ssr2-205ENSMUST00000193934 569 ntTSL 3 BASIC18.72■□□□□ 0.59
Scn3aA2ASI5 Btbd10-203ENSMUST00000119278 2394 ntTSL 5 BASIC18.72■□□□□ 0.59
Scn3aA2ASI5 Ccdc174-201ENSMUST00000037783 1752 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Scn3aA2ASI5 Tmem64-201ENSMUST00000062684 4670 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Scn3aA2ASI5 Ift74-202ENSMUST00000107104 1713 ntTSL 2 BASIC18.72■□□□□ 0.59
Scn3aA2ASI5 Rbm11-201ENSMUST00000046378 1400 ntAPPRIS P2 TSL 5 BASIC18.71■□□□□ 0.59
Scn3aA2ASI5 Mvk-201ENSMUST00000043760 1660 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
Scn3aA2ASI5 Lrrfip1-212ENSMUST00000189617 2155 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
Scn3aA2ASI5 Slc9a6-201ENSMUST00000077741 4976 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Scn3aA2ASI5 Tssc4-206ENSMUST00000177841 1364 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
Scn3aA2ASI5 Qprt-201ENSMUST00000032912 2050 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Scn3aA2ASI5 Trim33-202ENSMUST00000106860 5025 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
Scn3aA2ASI5 Hnrnpa1l2-ps-201ENSMUST00000129154 964 ntBASIC18.71■□□□□ 0.59
Scn3aA2ASI5 Gm45890-204ENSMUST00000212356 545 ntTSL 2 BASIC18.71■□□□□ 0.59
Scn3aA2ASI5 Icam4-202ENSMUST00000215077 1028 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
Scn3aA2ASI5 Dgcr6-202ENSMUST00000076757 894 ntTSL 5 BASIC18.71■□□□□ 0.59
Scn3aA2ASI5 Adck1-204ENSMUST00000222695 2253 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Scn3aA2ASI5 Hsf5-201ENSMUST00000093956 4158 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
Scn3aA2ASI5 Mettl27-204ENSMUST00000111219 1790 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Scn3aA2ASI5 Mff-211ENSMUST00000161648 1715 ntTSL 5 BASIC18.71■□□□□ 0.59
Scn3aA2ASI5 Atp5b-201ENSMUST00000026459 1916 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Scn3aA2ASI5 Igf2bp2-201ENSMUST00000100052 3899 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.58
Scn3aA2ASI5 Hspa1l-201ENSMUST00000007248 2472 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Scn3aA2ASI5 Zfp648-201ENSMUST00000086195 1892 ntAPPRIS P1 TSL 3 BASIC18.7■□□□□ 0.58
Scn3aA2ASI5 Mir8098-201ENSMUST00000184011 137 ntBASIC18.7■□□□□ 0.58
Scn3aA2ASI5 Gm28659-201ENSMUST00000188013 759 ntBASIC18.7■□□□□ 0.58
Scn3aA2ASI5 Mdm1-204ENSMUST00000169817 2022 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Scn3aA2ASI5 Mmd-201ENSMUST00000004050 2677 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Scn3aA2ASI5 Casp3-204ENSMUST00000211115 2601 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Scn3aA2ASI5 Ints6-201ENSMUST00000053959 4993 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Scn3aA2ASI5 Rapgef1-201ENSMUST00000091146 6212 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Scn3aA2ASI5 Scpep1os-201ENSMUST00000139592 811 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Scn3aA2ASI5 Sec61g-206ENSMUST00000166950 754 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Scn3aA2ASI5 Sec61g-207ENSMUST00000178855 779 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Scn3aA2ASI5 Hs3st2-202ENSMUST00000206880 1149 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Scn3aA2ASI5 A330070K13Rik-201ENSMUST00000063656 633 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Scn3aA2ASI5 Rhog-201ENSMUST00000098230 1269 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Scn3aA2ASI5 Gm14261-201ENSMUST00000145105 1429 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Scn3aA2ASI5 Kctd9-205ENSMUST00000152243 2528 ntTSL 2 BASIC18.7■□□□□ 0.58
Scn3aA2ASI5 Gps1-207ENSMUST00000172809 2000 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Scn3aA2ASI5 Col23a1-201ENSMUST00000102765 5658 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
Scn3aA2ASI5 Ubac2-201ENSMUST00000039803 2139 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Scn3aA2ASI5 Gm43702-201ENSMUST00000198772 2546 ntBASIC18.69■□□□□ 0.58
Scn3aA2ASI5 Irak1-205ENSMUST00000114353 1896 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
Scn3aA2ASI5 Pdxdc1-202ENSMUST00000115802 2466 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Scn3aA2ASI5 Gm14641-201ENSMUST00000136486 452 ntTSL 3 BASIC18.69■□□□□ 0.58
Scn3aA2ASI5 Platr15-201ENSMUST00000147128 768 ntTSL 5 BASIC18.69■□□□□ 0.58
Scn3aA2ASI5 Gm44357-201ENSMUST00000195897 142 ntBASIC18.69■□□□□ 0.58
Scn3aA2ASI5 Gm19658-201ENSMUST00000196231 138 ntBASIC18.69■□□□□ 0.58
Scn3aA2ASI5 Gm44367-201ENSMUST00000196836 138 ntBASIC18.69■□□□□ 0.58
Scn3aA2ASI5 Gm44350-201ENSMUST00000197197 138 ntBASIC18.69■□□□□ 0.58
Scn3aA2ASI5 Gm44390-201ENSMUST00000197533 144 ntBASIC18.69■□□□□ 0.58
Scn3aA2ASI5 Gm44313-201ENSMUST00000198018 138 ntBASIC18.69■□□□□ 0.58
Scn3aA2ASI5 Gm44486-201ENSMUST00000198508 138 ntBASIC18.69■□□□□ 0.58
Scn3aA2ASI5 Gm44454-201ENSMUST00000198541 138 ntBASIC18.69■□□□□ 0.58
Scn3aA2ASI5 Gm44314-201ENSMUST00000199263 138 ntBASIC18.69■□□□□ 0.58
Scn3aA2ASI5 Gm44394-201ENSMUST00000199558 138 ntBASIC18.69■□□□□ 0.58
Scn3aA2ASI5 Gm44484-201ENSMUST00000199873 138 ntBASIC18.69■□□□□ 0.58
Scn3aA2ASI5 Gm44466-201ENSMUST00000200264 138 ntBASIC18.69■□□□□ 0.58
Scn3aA2ASI5 Gm44359-201ENSMUST00000200671 138 ntBASIC18.69■□□□□ 0.58
Scn3aA2ASI5 Arrdc1-201ENSMUST00000028349 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Scn3aA2ASI5 Ubtf-206ENSMUST00000107123 2759 ntAPPRIS P3 TSL 5 BASIC18.69■□□□□ 0.58
Retrieved 100 of 76,532 protein–RNA pairs in 31.4 ms